Oncorhynchus tshawytscha (Chinook salmon): 112246895
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Entry
112246895 CDS
T05605
Name
(RefSeq) vacuolar protein sorting-associated protein 53 homolog isoform X1
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112246895
Membrane trafficking [BR:
otw04131
]
Protein recycling
Others
EARP complex
112246895
Endosome - Golgi transport
Tethering complex
GARP complex
112246895
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
Vps54_N
COG4_N
FBF1
Syndetin_C
ASH2L-like_WH
GrpE
hAT-like_RNase-H
PsaD
Sec8_N
NBD94
Laminin_II
Motif
Other DBs
NCBI-GeneID:
112246895
NCBI-ProteinID:
XP_024271259
LinkDB
All DBs
Position
LG13:complement(63662417..63693917)
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AA seq
831 aa
AA seq
DB search
MMMEEEELEFAEDLEAILHLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLA
NIDDVVNKIRLKIRCLDDNIRTVVRGQTNVGQDGRQALEEAQVAIGQLFGKIKDIKDKAE
KSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRKRQYGEVANLLQ
GVVNVLEHFHKYMGIPQIRQLSERVKVAQSELGTQILADFEEAFPAQGSKRAGGPSNVLR
DACLVANVLDPRIKQEIIKKFIRQHLSEYMVLFQENQDVAWLDKIDRRYAWIKRQLVDYE
EKYGRMFPEEWCMTERIAVEFCHITRTELAKVMRTRAKEIEVKLLLFAIQRTTNFEGLLA
KRFSGCTLTDGPGVKKPETPLESTNPFLEDEIGEDGSEMEEDLDRPKKHKAPDNPFHGII
SKCFESHLYVYIESQDKNLGEMIDRFVSDFRAQGPPKAGTEDGGAVLPSCADLFVYYKKC
MVQCSQLSTGEPMIAFTTIFQKYLREYAWKILSGNLPKTSSNSGGLTIKSLLQEKEGSEA
AKFTVEELCLICSILSTAEYCLATTQQLEEKLKEKVDKNLVERINLTGEMDTFSNVISNS
IQLLVQDLDAACDPALTAMSKMPWQSVEHVGDQSPYVTSVIMHIKQNVPIIRDNLASTRK
YFTQFCIKFTNSFIPKFINHLFRCKTISMVGAEQLLLDTHSLKTVLLDLPSIGSQVVRKA
PASYTKIVVKGMTRAEMILKVVMAPHEPSVVFVDNYIKLLADGNPETFQKTLDMKGLKRS
EQSSMLELFRQRLPTPPSGTDGGPSLSFSTPTPEQENSRIRKLEKLIKKRL
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggaggaggaagaattggaatttgcggaggatttggaggcgattttgcacctt
actcctgaggtgcagttggccatcgagcaggttttccccagtcaagacccattggacaga
gcagattttaatgctgtggaatacatcaatacattgtttcctactgagcagtcactggct
aatatagatgatgtggtcaacaagatccgtctgaagattcggtgtctggatgacaacatc
aggacggtggtgagaggccagaccaatgtgggccaggatggcagacaggcactggaggag
gctcaggtagccatcggccagctctttggtaaaatcaaagacattaaggacaaggctgag
aaatctgagcaaatggtcaaggagataacgcgggacatcaaacagctggaccatgctaag
cgtcacctgaccacctccatcaccaccctcaaccacctgcacatgctggccgggggtgtg
gactctctagaggcaatgacgaggaagaggcagtatggagaggtggctaacctgctacag
ggtgtagtcaacgtcctggagcacttccacaaatacatgggaatccctcaaatcagacag
ctctcagagagggtaaaagtggcccaaagcgagctggggactcagatcctggcagacttt
gaagaggccttccccgctcaggggtcaaagagagcagggggacccagtaatgttctgagg
gatgcctgtcttgtggccaacgtcttggacccccgcatcaaacaggagatcatcaagaag
ttcatcagacagcacctctctgagtacatggtgctcttccaggagaatcaggatgtagct
tggctggataagattgaccggcgctacgcctggattaagcgtcagctggtggactatgag
gagaagtacggacgcatgttccctgaagagtggtgtatgactgaacgcatcgctgtggag
ttctgccacatcaccaggacagagctggccaaagtgatgcggacgcgggccaaagagatc
gaggtcaaactgcttctttttgccattcagaggaccaccaactttgaggggctgctcgcc
aagcgcttctctgggtgcaccctcactgacgggcccggggtgaagaagccggagacacca
ctggagtccaccaaccctttcctggaggacgagattggagaggatgggtcagagatggag
gaggatctggataggcccaagaagcacaaggctcctgacaaccccttccatggcattatt
tccaagtgcttcgagtctcacctctatgtctacatcgagtctcaggacaagaacctgggg
gagatgattgaccgtttcgtgtcagacttccgggcacagggcccccccaaggcgggcacg
gaggacggtggagcggtgctgcccagctgtgctgacctgtttgtctactataagaagtgc
atggtgcagtgctctcagctcagcacaggggaacctatgatcgccttcaccaccatcttc
cagaagtacctcagagagtatgcctggaagatactgtctggaaacctgcccaagactagc
agtaacagtggaggactgaccatcaagagtctactgcaggagaaggagggttcggaggct
gctaagttcactgtagaggagctgtgcctcatctgtagcattctcagtactgcagagtac
tgtctggccacaacacagcagttggaggagaagctgaaggagaaggtggataagaacctg
gtggagagaatcaacctgacaggagagatggacaccttcagcaatgtgatctccaacagt
atccagttgcttgttcaggacctggacgctgcctgtgaccctgctctcactgccatgagc
aagatgccatggcagagcgtagagcatgtaggtgaccagagtccctatgtgacgtcagtc
atcatgcacatcaaacagaacgtccccatcatcagagataacctggcctccacacgaaaa
tacttcacccagttctgcatcaagttcaccaactctttcattcctaaattcatcaaccac
ttgttcaggtgtaagactatcagcatggtgggggctgaacagctcctcctggacacccac
tccctgaagacagtgttgttggatctgccctctataggctctcaggtggtccgcaaggcc
ccagccagctacaccaagatagtcgtgaaggggatgacccgcgctgagatgatcctcaag
gtggtcatggccccccatgaaccctctgtggtgtttgtggataactatatcaagctcctt
gctgacgggaacccagagaccttccagaaaactctggatatgaaggggttgaagcgcagt
gagcaaagcagcatgttggagctcttcagacagaggttacccactccaccctcagggacc
gatggaggcccctctctctccttcagcacccccacccccgagcaggagaactcgcgcata
cgcaaactggagaagctcatcaagaagagactctga
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