Oncorhynchus tshawytscha (Chinook salmon): 112246983
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Entry
112246983 CDS
T05605
Name
(RefSeq) transcription termination factor 1 isoform X1
KO
K15225
transcription termination factor 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112246983
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
Transcription termination factors
112246983
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
112246983
NCBI-ProteinID:
XP_042156243
UniProt:
A0AAZ3S3A8
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Position
LG17:complement(17678723..17684777)
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AA seq
780 aa
AA seq
DB search
MYISGFPAMSLWSPRFHFPHVFNQIEKIGYAAATMLGTPTSTKQGTRENSMLFEMSRISP
LLFEDTPELISSVAPDTVEGCKKKKKKKTKALSEQGSEEPAIEHNQNDGHQLKVEKGGEE
PKHKEQTVTVVEKERKKLKKGKQEKQPNVIQDEMEVPDPEEQTGGKTKKKSKNLQTQQVG
AEGVTADEKSMNSRKNKRKHNNIEPERGIDSVLSKAAVDVSAVTAPDEARKSKKKHKNRQ
TELEGAESCLTVSRTAEDPEIIELHTETVKSGERMVTEAAENVKEKRKQNKKKHGESELN
DCPDKADLPGIKEQTERKLKSKRSKSDGGSTAVEGSGRKKKLRRASDKGMASVHSAADVF
DLAVPNDNRTHDAGTNSETEEGAHSVIETGTQHNKPCLKEETLSVDDWQALKDLKEFIPN
IESKSVDEIHKMIKYDLDRFKEFRRQGLSLRSGRFNAQENERLRSNVYNFLSLTGIQSGS
ELFHPQRFKEEEANIKKLKRQHRFHERIGEGIPRPWHQVYIRGRKMFDGSNYKGRFTKEE
LHSLKKLQTLHGNKWAKISQLTGRSESSLEKRFAQMSANRGAWTDEELKRLMEAVRKHLV
GQAEPGSGPATVRKDHLYNNIPWTDVCQAVETRHWSQCRIKWLAVLKHKMACGHPVFSGG
TQSLQGKVDLIKALNAMQIEDAADIDWEEIAYTIGDVTPRYIQTHYYRLKVARVPMWQSM
SFCEIIDFLNSRVLPNFEERLQVLINSGEMVSRNDPQELFLLSEIFDNEDSDYYSEVQNS
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgtacatttccggatttccggctatgtcgctttggtcgccacggttccactttccacac
gtgttcaaccagatagagaaaataggatatgctgcagccaccatgctagggactccaaca
tccaccaaacaagggacacgtgagaattccatgttgtttgagatgtctcgaatatcccct
cttctatttgaagacactcctgaattaatctcatcagtggcacctgatacagtcgaggga
tgcaaaaagaagaagaagaaaaagactaaagctctatctgaacagggatcagaagaaccg
gcaattgagcataatcaaaatgatggtcaccagttgaaggtagagaaagggggtgaagaa
cctaaacataaagagcaaacagtgactgtggtggagaaggagaggaagaaactcaaaaaa
ggaaagcaagagaagcagccaaatgttattcaagatgaaatggaggtaccagatcctgag
gaacaaactggagggaaaacaaagaaaaagtccaagaatcttcaaacacaacaggtggga
gcagagggagtgactgctgatgagaagagtatgaatagccggaagaataagagaaaacat
aataacattgagccagaacgggggatagacagtgtcctctcaaaggctgcagtagatgtt
tcagctgtaactgcgccagatgaggccagaaagagtaagaagaagcacaagaacagacaa
acagaacttgagggagcggaaagctgtctgacagtttcaagaacagcagaggatccagaa
atcatagaactgcacactgaaacagtcaagagtggtgaacgtatggtaactgaggcagcg
gagaacgtaaaagagaagaggaaacaaaataagaaaaaacacggagagagtgaactgaat
gattgtccagataaagcagaccttccaggtataaaagaacaaactgaaagaaaattgaag
tcaaagaggtcgaaatcagatggagggtctacagctgtggagggcagcgggagaaagaaa
aaactacgcagagcgtcagacaagggaatggccagtgtccactctgcagcagatgttttt
gatttagctgttccaaatgacaacaggactcatgatgctggaacaaacagtgagacagag
gagggcgcccattcagtcattgagacagggacccaacacaacaaaccctgcctaaaggaa
gaaactctaagtgtggacgactggcaagctctgaaggatctcaaagagttcattcccaac
attgagtcaaagtcggttgacgagatccataagatgataaagtatgatcttgatcgattc
aaggaattccgaagacaaggcctttccctgcgaagtggaagattcaatgcgcaggagaac
gaacgactcaggagtaatgtctacaacttcctgtctctcactgggattcagagtggctct
gagctcttccatccacagcgctttaaagaggaagaagcaaatatcaagaaattgaagagg
cagcacagattccatgaaagaataggtgaaggaatacccaggccttggcatcaagtctat
attcgtgggaggaaaatgtttgatggcagcaactacaagggcaggttcaccaaagaagag
cttcactctttgaaaaaactgcagacgttgcacggcaacaagtgggcgaagatctcacag
ttgactggccgaagcgaatcgtccctggagaaacgtttcgctcaaatgtctgcaaacaga
ggcgcgtggaccgatgaagaactgaaaagactaatggaagctgtgcggaagcacctggtg
ggacaggcagagcctggtagtggaccagccaccgtcaggaaagaccatctgtacaacaac
atcccctggacagatgtgtgccaggcggttgaaacgcgccactggtcccagtgtcgaata
aaatggttggctgttttgaagcacaaaatggcatgtggacacccagtattcagtggcggc
acacaatccttacagggcaaagtggatttgatcaaagcgttgaatgcaatgcagatagaa
gatgctgcagatatcgactgggaagaaattgcttacacaattggggatgtcacgccgcgc
tacattcagacacactactacaggttaaaggtagccagagttccgatgtggcagagcatg
tccttctgtgagatcatcgacttcctcaacagtagagttctccccaattttgaagagcgc
ctccaagttctgataaactcaggagagatggtgtccagaaacgatcctcaagagctcttt
ctcctctctgagatctttgataatgaggacagcgactactacagcgaggttcagaacagt
taa
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