Oncorhynchus tshawytscha (Chinook salmon): 112247022
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Entry
112247022 CDS
T05605
Name
(RefSeq) dmX-like protein 1 isoform X7
KO
K24155
rabconnectin-3a
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
112247022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112247022
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112247022
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
112247022
RAVE complex
112247022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
Beta-prop_EML_2
YjeJ
Motif
Other DBs
NCBI-GeneID:
112247022
NCBI-ProteinID:
XP_024271487
LinkDB
All DBs
Position
LG04:11749023..11802282
Genome browser
AA seq
2614 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGSINNQPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV
GCVDSSLQGGQVAASYGSIVCVFEPVQLMNQKDRTSAELRYQWQKSGQFVLQSVVRNLAW
DPTGTRLLTGSASLQLWSNISDGFDEAVEQTDMTIGDPQCPWRCIWHCKTASPIQLMKFS
PDGEFFATAGQDDCLVKVWYGTSKWQSGVTKLFTPPEHNAQGELDFSFVYLAHPRTVTGF
SWRKTSKYMPRGSVCNVLLTCCKDSVCRLWAETLLPSDSLLSGHTLSHVNNNGQSSDSLK
SSSSKKTPSRIKTQDRNSLELNLQESWRAPLRGVAQPSLTGRLPTQQNSHHNHKTNSVPH
ANALCHFHIAASINPATDIPLLPSITSLCGGDDEEPGGPFTVHWLNNKELLLTLAMEVFL
QQLRGSVEQNHSENSQEELDYEEVEEASRRAAEGGPDVASTQLPAAAVEHQVEVLLEDWN
RGADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLSRSVV
MYACNKNVDLAIQHGRQRPAGLPHSSSVLIPYGQSKATSYSSSLRLSIFTPNVLMISTHS
DGSLNQWAVSFAEESAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLTTSHHNALRTP
DVDSVHAPLTTLSQPFGGGPSRVSLGAVSQDPNAIYSELILWRVDPVGPLSFSGGVSELA
RINSLHSSAFSNVAWLPTLIPSNCLGVYCNSPSACFVASDGHSLRLYQAVIEAKKLLSEL
SNPDISKYVGKVFNIISQQSTAKPGCIIELDAITDFQGKETQLLHVFEEDLILGSERREA
TQEAPAIETASSQPGFSARFFLVVVEFTQTGRSFLHMWHLQLAAGQITMDETGALPEKEN
MTSSPMNSSFSFETFSSPSAQKNKPCTSNLQSASRLTLATHRLYSQELALPDGVEVISVT
PSAGHLSASSLQPAGGAPYLLATSCSDGKVRFWRCRVAAVEPDTKELTYTWEEWPLLVEE
GLGNSSAVTVSGRPVTVSCCHTSRIAVAYRHNPSPHLSPNHLSPNPQQGVREPLVHVGLF
QCESTGGSHWVLEQTLVLDASTPTGNNNNNMESGVKDLNVENNNLDIYLPNDDCLGTSGK
SLVHLDWVSREDGSHILTVGIGSKLYMYGLLSGKPPELGLSEGPREQSSSRLVLLRSVDL
VSSVEGSLPIPVSLSWVRDGILVVGMDCEMHVYSQWQPPALAKSTASNTTTTDMGSVSSL
LAAMKQSHEEGLNPTPPKKSLTRSMTSLAQKLSGKRTVYDLPAEMEDYGLFEAAHHLFPT
LPQYHPVQLLELMDLGKVRRAKAILSHLVKCIAGEIVALKDNGTNQDKRLRSRTISAGGS
TSRDPKLFSKGESSDYTEIDSIPPLPLYALLAADEDCSPKPKDKVASLSGDSGHGSSQTD
AYDELFQSSGVGVDDLEHMDSDQEDGGAKVIDLSQYSPTFFGPEHAQVLSSHLLHSSLPG
LTRMEQMSLMALADTIATTSTDIRESQSRGKGGETLDECGLKFLLAVRLHTFLLTTLPPA
HRAQLLHQGLSTCHYAWAFHSEAEDELLHMLPALQKGDPTWPELRAMGMGWWLRSTNKLR
RCIEKVAKASFQRQNDPLDAAIFYLAMKKKAVVWGLYRSQKNAKMTAFFSNNFGEERWRR
AALKNAFSLLGKQRFQHSAAFFLLAGSLKDAVEVCLEKMQDLQLALVISRLYESEFETSS
TYKRILQRHVLGQDRQLPGHQDPFLRSTAYWVLEDYSRALDTLLEQPAAPNLVSSTQAGH
TTQPGSTSSTSLCSPEVFNFYTYLRTHPLLLRRHFGSSEKTRMGLTAEGRMANSISLVER
RLFFTAAYAHLQAGCPMLALEVLSKMPKVVKRSKLPQDDTTNPDLSETKKEQASDLDWSQ
PALNGFESVSDSLSNSQSDSVLSFDWGQPSVSVQDEALELKWDSDKEEEEEDDDEPQGLA
MKSADNTSSVFQDAISPLTEMLLDEGDFLMPSEDILAAQLKFSACLKILTTELRTLSTGY
ELDGGKLRYQLCQWLEREVVALQRCCSYKPCLPELALGMAGPGGEEEAQAHPGEAQRTRR
HWLQSNQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQESQQDDGVQSAVAPYLHHASI
PLLLACTASAKTVVANPIVHLTNLTHDILHTINALDSPPHPDVVNNEIYVMHTLAASLSA
CIYQCLCDGHNHSHVNQFTGIVYQSILSFQHHSVRTVSMEETVLPNTHPAQWPGISTLIR
LLNSAGEESQPGLAVLLCEILTAVFLSLFVHGLATHSSNELFRIVAHPLNSKLWVAVFGG
GARTPITEKPSKAMSPPAANEEFDRKPRRFKLLSSSPRSASREGPETPSPTSPVVEQETS
IFKEHFVPPELSIWDYFIAKPFLPPSESRVEYESEESQGSQDEDDDDDDDEFGDFDPNSP
SREHSNPNSYSWCLMRLAMVQLVLGNLKSFYPMAGHDLLDLPVGSPLCHAVLKTLQRWEQ
VLLKRLEIFGGPPSKYISTHPLDETAASGPAILRHKALFEPSNTPFRSSHHSALPVKRLW
QYLVKQEEVQETFIRNIFTKKRNQNEIVFPVDSA
NT seq
7845 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttcaccaagtccttactggggccgtcaacccaggggacaattgtttttctgta
ggtagcataaacaaccaaccattcacggcatatgcctctggctgtgacgttgtgattttg
ggcagtgactttgaaaggctacagatcatcccaggagcgaagcatgggaacatccaggtg
ggctgtgtggacagctcactacagggaggccaggttgcagcttcctatggaagtattgtc
tgtgtctttgagccggttcagctcatgaaccagaaggacaggacatcagcagaactgaga
taccagtggcagaagagtggacagtttgttttgcagtccgtagtgcgtaacctggcctgg
gaccccacaggcactcgtctcttaactgggtccgctagcctgcagctgtggtccaatatc
agcgatggttttgatgaggcagtggaacagacagacatgacaattggtgaccctcagtgt
ccctggaggtgtatctggcactgcaaaactgcctccccaattcagctcatgaagttctct
ccagatggagaattctttgctactgccggacaggacgactgtctggtcaaagtgtggtac
ggcacgagcaaatggcagtctggcgtgaccaagctgttcaccccaccggagcacaacgct
cagggcgagctcgacttctcttttgtctacctggcacacccacgcactgtaacaggcttc
tcctggaggaagaccagcaagtacatgccacggggttcagtgtgcaatgttctactgaca
tgctgtaaggacagtgtgtgtcgcctgtgggccgagaccctgcttcccagtgacagcttg
ctgtccggacacacgctcagtcacgttaataataacggacagagcagcgactcactgaaa
tcgtcaagcagcaagaagactccctctcgtatcaaaacacaggacaggaattccctggag
ttgaatctgcaggagtcgtggagagcccccttgagaggtgtggcccagccctccctaacc
ggccgcctcccgacccagcagaacagtcaccacaaccacaagaccaacagcgtgccccat
gccaacgctctctgccacttccacatcgctgccagcatcaaccctgccacagatatcccc
ctgctgccctctatcacgtcgctgtgtgggggagatgacgaggagcctggcgggcccttc
accgtgcactggctcaacaacaaggagctgcttctcaccctggccatggaggtgttcctg
cagcagctcagaggcagtgtggagcagaaccactcggaaaactcccaggaggagcttgac
tatgaggaggtagaggaggcttctaggcgagcggcagagggaggacccgatgtggcgtcc
acccagctgcctgctgcagcggtggagcaccaggtagaggtactactggaggactggaac
agaggggcagacatgctgttcagtatccaccccatggatggctctctgctggtgtggcat
gtggactggctggatgaataccagcccggcatgttccggcaggtccaggtgtcctttgtg
tcccggattcctgtggccttccccacgggcgacgccaactccctgagccgcagcgtggtc
atgtacgcctgtaacaagaacgtggacctagccatccaacatggccgccagcggcctgcc
ggcctgccacattcctcgtcggtgctgattccctacggccagagcaaggcgacctcttac
tccagcagcctccgcctcagcatcttcacccccaacgtgctcatgatctccacgcactcc
gatggctccctcaaccagtgggcggtcagcttcgcagaggagtcggccttctccactgtg
ctcagcgtgtcccacaagtcacgctactgcggccaccgcttccacctcaacgacctggcc
tgccactccctgctgcccctgttgctcaccacctcacaccacaatgctctgcgcaccccc
gacgtggacagtgtccacgcccccttgaccaccctttctcaaccctttgggggcgggccc
agccgggtgtccctgggcgctgtgtcgcaggaccccaacgccatctacagcgagctcatt
ctgtggagggtggatccagtgggacctctgtccttctctggaggggtgtctgagctggcc
aggatcaactctctccactcctccgccttctccaatgtagcctggctgcccacacttatc
cccagcaactgccttggtgtctactgcaactctcccagtgcctgcttcgtggccagtgac
ggtcactcgctgaggctttatcaggctgttattgaagccaagaaactactcagtgagctc
tccaacccagatatttcaaaatatgtcgggaaagtttttaacatcatcagccagcaatcg
actgctaaaccaggttgtatcatcgagctagatgccattactgacttccagggaaaggag
actcagctgctgcatgtgtttgaagaggatctgattctgggcagtgagcggagagaagcc
actcaggaagctcccgctatagagactgcctccagccagccaggcttctccgcccgcttc
ttcctggtggtggtagagttcacccagactggcaggtctttcctgcatatgtggcacctg
caactggcagctggccaaatcactatggacgagaccggcgctctgcctgaaaaggagaat
atgacctcgtcgccaatgaacagctcctttagctttgagacgttcagctccccctcggcc
cagaagaacaagccttgcacgtccaacctgcagagtgccagtcgcctcaccctggccact
cacaggttgtacagccaggagctagctcttccagatggtgttgaggtgatcagtgtcacg
ccctcagcaggtcatctgagcgcgtcctccctgcagccggcaggtggcgctccctatctc
ctggccacttcctgttcagacgggaaggtgaggttctggaggtgcagggtggctgcagtg
gagccagacaccaaggagctgacgtacacctgggaggaatggcctctattggtggaggag
gggctgggcaacagcagtgccgtgaccgtgtcaggcagaccagtcacggtcagctgttgt
cacaccagccgcattgcagtggcctaccgacacaaccctagccctcacctgagccctaac
cacctgagccctaaccctcagcagggtgtcagggaaccactggtccatgtagggttattc
cagtgtgagtccacaggtggctcccactgggtgctagagcagaccctcgtcctggatgcc
tccactcccactggtaacaacaacaataacatggagagtggcgtcaaggacctgaatgtg
gagaataataacctggacatctatctgcccaatgacgactgcctggggacctctggtaag
agtctggtccacctggactgggtctccagggaggacggctcccacattcttactgtgggg
attggttccaaactctacatgtatggcctgctctctggcaaacctcctgaactgggcctg
tctgagggccccagggagcagagctcttcccgcctggtcctcctgcgctccgtggacctg
gtctcctccgtggaaggctccctgcccatccccgtctccctgtcctgggtgagagacggc
atcctggtggtgggcatggactgtgagatgcacgtgtactcccagtggcagcccccggcc
ctggccaagtccacggcctcgaacaccaccaccacagacatgggcagcgtgtcatctctc
ctggctgcaatgaaacagagccatgaggagggcctgaaccccactcctcccaagaagagc
ttgaccaggtccatgaccagcctggcccagaagctgagtgggaagaggacagtgtacgac
ctgcctgcggagatggaggactacgggctgtttgaggcagcacaccacctgttccccacc
ctgccccagtaccacccggtacagctgctggagctcatggacctggggaaggtccggcgg
gccaaggccatcctctcccacctcgtcaaatgcattgccggggagattgtggccctcaaa
gacaacggcaccaaccaagacaagcgtctccgctcgcgcaccatcagcgccggcggcagc
acctccagagaccccaagctcttcagcaagggcgagagctcggactacacagagattgac
tccatccctcccctgcccctgtacgcgctgctggcggccgacgaggactgctcccccaag
cccaaggacaaggtggccagcttgagtggagacagtggccacgggtccagtcagacggac
gcctacgatgagctcttccagagcagcggggtgggtgtggacgacctggagcatatggac
agcgaccaggaggacggcggtgctaaggtcatagacctgtctcaatatagccccaccttc
tttgggccagagcacgcccaggttctgtccagccacctgctccactccagcctgccgggc
ctgacccgcatggagcagatgtccctcatggccctggctgacaccatcgccaccacaagc
actgacatccgggagagccagagcaggggtaaaggtggagaaactttggatgagtgcggt
ctgaagttcctgttggctgtgaggctccatacgttcctgctgaccaccctgcctcctgcc
catcgcgctcagctgcttcaccaaggtctgtccacctgtcactacgcctgggccttccac
tccgaggctgaggacgagctgctccacatgttacctgccttgcagaaaggagaccccacc
tggcccgagctccgcgccatgggcatgggctggtggctcaggagcaccaataaactccgg
aggtgtatagaaaaagtcgcaaaagcgtcttttcaaaggcagaacgatcctctggacgcc
gccatcttctatctcgctatgaaaaagaaagcggtggtctggggactgtacaggtctcag
aagaatgctaaaatgactgcgttcttcagcaacaacttcggtgaggaaaggtggaggagg
gctgccttgaagaacgccttctctctgctggggaagcagcgcttccagcactctgcagcc
ttctttcttttggcaggctccctcaaggacgcagtggaggtttgcctggagaagatgcag
gacctgcagctggccctggtgatctcccggctctatgagtccgagtttgagacgtcctcc
acctacaaacgcatcctgcagaggcacgtgctgggccaagaccgccagctccccggccac
caggaccccttcctgcgtagcacggcttactgggtgctggaggactacagccgggccctg
gatactctgttggagcagcctgctgccccaaacctagtgtcctctactcaggctggccac
acaactcaaccaggtagtacctcgtccacgtccctctgtagcccggaggtcttcaacttc
tacacctacctccgcacacatcccttactgctgcgccgccattttggctcgtctgagaag
accaggatgggtctgacagcggagggtcgcatggcaaactcaatcagcctggtggagagg
aggctgttcttcaccgcagcctacgctcacctgcaggccggctgccccatgctggccctg
gaggtcctctccaaaatgcccaaagtcgtcaaaagatccaagctcccccaggacgatacc
accaaccccgacctgagcgagacgaaaaaggaacaggcgtcagatttggactggtctcag
cccgcgttgaacggcttcgagtctgtgtcagacagcttgtccaatagccaatcggactct
gtgctgagttttgactggggccagccctctgtgtcggttcaggatgaagccctggagttg
aaatgggacagcgacaaggaggaggaagaggaggacgacgacgaaccacagggcttggcc
atgaagagtgccgacaacaccagtagcgtctttcaagacgccatctctccattgacggag
atgctgctggacgagggtgacttcctcatgccctctgaggacatcctggccgctcaactc
aaattcagcgcctgcctaaagatcctgaccacggagctgcggactctgtccacgggttac
gagctggacggagggaagcttcgctaccagctgtgccagtggctggagagggaggtggtg
gccctgcagaggtgctgcagctacaagccctgcctgccagagctggccctgggaatggca
gggccgggtggagaggaggaggcccaggcccaccctggtgaggctcagcgcacccgcaga
cactggctccagagcaaccagcctctcctgcgcatgttcctcagctactgcagcttgcac
ggctcccacggaggaggcctggcctcggtgcgcatggaactcatcctgctgcttcaggag
tcccaacaggatgacggtgtccagtcagccgtcgccccctacctgcaccacgcctccatt
cctctcctgctggcctgcactgccagtgccaagacagttgtggccaaccccatcgtccat
ctgaccaacctcacccacgacatcctacacaccatcaacgcactggactcccctccacac
ccagacgtcgtcaacaacgagatctatgtgatgcacacactggcagcctcgctgtccgcc
tgcatataccagtgtctctgcgacggccacaaccacagccatgtgaaccagttcactggg
atagtgtaccagagtatcctctccttccagcaccactcggtacgcactgtgagcatggag
gagactgtactgcccaacacccacccagcacagtggccaggtatcagtaccctgatccgc
ctgttgaactctgctggtgaggagagccagccaggcctggccgtgttactgtgtgagatc
ctgacggccgtcttcctcagcctgtttgtgcacggcctggccacccactccagcaacgag
ctgttccgcatcgtggcccacccgctcaacagcaagctgtgggtggctgtgttcggaggg
ggggcgcgtacccccatcacagagaagcccagtaaggccatgtcacctccagcagccaat
gaggagttcgataggaagcccaggcgcttcaagctgctgtcgtcgtcgccacgcagtgcc
tccagagaggggccagagacccccagcccaaccagccctgtggtggagcaagagacctcc
atcttcaaagagcactttgtccccccggagctcagcatctgggactactttatcgcaaag
cctttcctccctccgtcagagagcagggtggagtacgaatcggaggagagccagggcagt
caggacgaggatgatgatgatgatgatgacgagtttggagactttgaccccaactctcct
agccgagaacattccaatcccaactcctacagttggtgtctgatgcgtctggccatggtc
cagctggtcctaggcaacctgaagtcattctaccccatggcaggacacgacctactagat
ctacctgtgggctctcctctgtgtcacgcggtgctgaagaccctccagcgttgggagcag
gtgttgctgaagaggctggagatcttcggggggccgccctccaagtacatctccacacac
cctctggacgagacggctgcctcgggccccgccatcctcagacacaaagccctgtttgag
ccctccaacacacccttcaggtccagtcaccactctgccctgcctgtgaagaggctgtgg
cagtacctggtcaaacaggaagaggtgcaggaaacgttcatccgcaatattttcaccaag
aaacgaaaccaaaacgagattgtgtttcctgttgactctgcatga
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integrated database retrieval system
