Oncorhynchus tshawytscha (Chinook salmon): 112247194
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Entry
112247194 CDS
T05605
Name
(RefSeq) neurofilament medium polypeptide-like
KO
K04574
neurofilament heavy polypeptide
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112247194
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type IV
112247194
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Filament
Motif
Other DBs
NCBI-GeneID:
112247194
NCBI-ProteinID:
XP_042155833
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Position
LG16:28454177..28458716
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AA seq
1264 aa
AA seq
DB search
MNEKELLHGLNDRFAGFIEKVRHLEHQNELFEREIEEIKLKAQSPASLAQEHEPELMDLR
NLVHDITLQKRQIEIEHQNLEEDFLTLRDKYEQEARDRSNAENGILVLKKDANDAYLAKL
QLDKKAQSLVDEIHFLKNNHEDEISEMVAQIQEAQVTVKAHDFGKPDITEALRDIRVHLE
GHATSDFQQAEEGFRIQFTKLTKAAESNREALKATQQEIQENRRHLQGKTIELDCGKGMR
EALEKQLHELEKRHYAEMIHYQDTIRQLENELTNAKLDMSGYLRENQDLLNVKMALDVDI
LSYRKLLEGEESHLYTISDTHISMPCIYRQSPIYTLPCLARQGGPTRRPEPQYKFVEEII
SETTRDMEMSEIEETGSEETVGGEGDELRQKQGEESDKAERRSGEEEDEDKEKARGKVDV
EVDAPEEEGEQEEESKRQQMVTSAEVEVNGENGEEGDDEREEEKGGEPDAIKKTEDIDRG
ENIQSEVKSAEATSEGEKEKLDTTEKLDSEINETLEKGDIPKHGESQPEIPTNGDISTEP
KTSESEDSKTGSSIKGEPQGSTEDISKEPKKVSGERKKESPLKEKKEVDLKEESAPTEQQ
QDSPKESPIKEGKKVDLTEQSAPTLEQKPDQKEHSESDQPQEAESALTTQEEDLPEPTEK
NMESPDNTAELNSSSTKETVKQVKSPDDSGVKMTQDERTVGGKMPDRILSTTSECKEEPV
QKTPKQEVGPTEQKVSSKDDSVKSIVQNEHNGSEKVTKDVSMGEEKGKESETSPKPDATV
TPKEETTLQPEPTVTPKEETSPKPEPTVTPKDETSLKPDQTVIPKEESSPQQEPTVTPKE
ETSPKSDPTVTPKEETSPKPDATVAPKEETAPQPEPTVTLKEEISPKPYPTVTPKEETSP
QQEPVVTPKVENSPKPEPAVTTIEETSPKPELAVTPKEDISPKPEPAVTPKVENSQKPEL
AVTPKVETSPKPEPEPSVTPKEETSPKPEPAVTTKEESSPEPAVTTKEETSPKPEPAFTL
KLETSPPPELAVTPKVETSPKPEPAVTVKEETSPKPEPAVTPKEETSPKPDPAVTPKQEI
SPKSDSTLTPESTTTPKPDSTLTPESTTTPKPDSTLTPETTTTPKPYSTLTPESTTTPKP
DPTITPKQEISPKSDSTLTPESTTTPKPDSTLTPESTTTPKPDSTLTPETTTTPTEESEM
IGSGDKAKTITPPEEQMPAVAESKDSHRGVPESNTTQEKPEESMDKEPEKVTDPKDRERE
YQGF
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagaaagaactgctccatgggctgaacgaccgtttcgccggattcatagagaag
gtgcgtcatttggagcatcaaaatgaattgtttgagagggaaatcgaggaaatcaaacta
aaagcacagtcccctgcgtctctggctcaggagcacgagccggagcttatggacctgagg
aacctagttcatgacatcacccttcagaagcgtcagatcgagatagagcatcagaacctg
gaggaagatttcctcaccttgagagacaagtatgagcaggaggcacgtgaccgctcgaac
gcagagaacggcatccttgtgctgaaaaaggacgccaacgatgcatacctcgccaaactt
cagttggacaagaaagcgcagtctttggtggacgagatccacttcctgaagaacaaccat
gaggacgagatatcagaaatggtggcccagatccaagaggctcaagtaacggtcaaggcg
cacgactttggcaaacctgacatcacagaggctctccgggacatccgtgtgcatttagaa
ggtcacgccacctccgactttcagcaggccgaggagggcttccgtatccagttcacaaag
ttaaccaaagcggcagaaagcaacagagaggcgttgaaggcaacccaacaggagatccag
gagaatagaaggcacctgcaggggaaaacaattgaactggactgtgggaaaggaatgaga
gaggccctggaaaaacaactacacgagctggagaagcgtcactatgcggaaatgattcat
taccaggacactatcaggcagctggagaatgagctgaccaatgctaaactagacatgtct
ggctacctgagagagaaccaggacctgctgaatgtcaaaatggctttggatgtggatatt
ctctcttacaggaaactcctggagggtgaggagtcccatctgtacaccatctctgacacc
cacatctccatgccctgcatctaccgccagtcccccatctacaccctgccttgcctggcc
cggcagggagggcccacacgcaggcctgagccccagtacaagtttgttgaggagatcatc
tctgagaccactagagacatggagatgtccgagatcgaggagacaggctccgaggagacg
gtcgggggagagggagacgagttgagacagaagcagggagaagagagtgacaaagctgag
aggaggagtggggaagaggaggatgaggacaaagagaaagctagaggtaaagtggatgtt
gaagtggatgccccggaggaagagggtgaacaggaggaagagtctaagagacagcagatg
gtaacatcagcagaggtcgaggtaaatggagaaaatggagaggagggagatgatgaaaga
gaggaggaaaaggggggtgagccagatgcaatcaaaaagacagaggacattgacagaggt
gaaaatatacaaagtgaagtcaaatcagctgaggccaccagtgagggcgagaaggaaaaa
ctggacacaacggagaagctagacagcgagataaatgagacattagaaaaaggtgacatc
ccaaagcatggtgaatcccaaccagagattcccacgaatggtgacatctcaacagaaccc
aaaacgtcagagtcagaggatagcaaaacaggaagttcaataaagggtgaaccacagggc
tccacagaggacatctccaaagaacccaaaaaggtgtcaggggagagaaaaaaagaaagc
cctttaaaagagaaaaaagaggtagatctgaaagaggagagtgccccaacagagcaacaa
caagacagcccaaaagaaagtcccatcaaagagggaaaaaaggtagatctgacagagcag
agtgccccaacactggagcagaaacctgatcagaaggagcacagtgagtcagaccaacct
caagaggcagagagtgctctgacaacacaagaagaggatctccctgagcccacagagaag
aacatggaatcccctgataacactgcagagctcaacagcagttcaaccaaggagacagtg
aagcaggtgaagtcacctgatgattctggtgtaaaaatgacgcaagatgagagaacagta
ggaggtaaaatgccagacagaattctcagcacaacaagtgagtgtaaggaagagcctgtg
caaaagactcctaaacaggaggtgggtccgacagagcaaaaagtgagcagcaaggatgat
agtgtaaaaagtattgtgcagaatgaacataatggcagtgaaaaggtcacaaaagatgtc
tcaatgggtgaggaaaaggggaaagaatctgagacatcccctaaacccgacgccactgtc
actcctaaagaagaaacaaccctgcaaccagagccaactgtcacccctaaagaggagaca
tcccctaaaccggaacccactgtcacccctaaagacgaaacatccctaaaaccggatcaa
actgtcatccctaaagaggagtcatccccacaacaggagccaaccgtaacccctaaagag
gagacatcccctaaatcggaccccactgtcacccctaaagaagaaacatcccctaaaccg
gacgccactgtcgcccctaaagaagaaacagccccgcaaccagagccaactgtcaccctt
aaagaggagatatcccctaaaccgtaccccactgtcacccctaaagaggagacatcccca
caacaggagccagttgtcacacctaaagtagaaaattccccaaaaccagaaccagcagtc
accactattgaagaaacttccccaaaaccagaactagcagtcacccctaaagaagacatt
tccccaaaaccagaaccagcagtcacccctaaagtagaaaattcccaaaaaccagaacta
gcagtcacccccaaagtagaaacttctccaaaaccagaaccagaaccatcagtcacccct
aaagaagaaacgtccccgaaaccagaaccagcagtcaccaccaaagaagaatcttcccca
gaaccagcagtcaccactaaagaggaaacttccccaaaaccagaaccagcattcaccctt
aaattagaaacttccccaccaccagaactagcagtcacccctaaagtagaaacttcccca
aaaccagaaccagctgtcaccgttaaagaagaaacttccccaaaaccagaaccagcagtc
acccctaaagaagaaacttccccaaaaccagatccagcagtcacccccaaacaggaaata
tcccctaaatcagactcaaccctcaccccagaatcaacaaccacccctaaaccagactca
accctcaccccagaatcaacaaccacccctaaaccagactcaaccctcaccccagaaaca
acgaccacccctaaaccatactcaaccctcaccccagaatcaacaaccacccctaaacca
gacccaaccatcacccccaaacaggaaatatcccctaaatcagactcaaccctcacccca
gaatcaacaaccacccctaaaccagactcaaccctcaccccagaatcaacaaccacccct
aaaccagactcaaccctcaccccagaaacaacgaccacccctacagaagagagtgaaatg
ataggcagtggtgacaaagctaagacaatcacaccaccagaggaacagatgcctgcagtt
gcagagagcaaggactcacacaggggggtgccagaaagcaacacaactcaggagaaacca
gaggaaagtatggataaagagcctgagaaggttacagatcccaaagacagagagcgtgaa
taccaaggcttctga
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