KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112247330
Entry
112247330         CDS       T05605                                 
Name
(RefSeq) ataxin-2-like isoform X1
  KO
K23625  ataxin 2/2L
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otw03019]
    112247330
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     112247330
SSDB
Motif
Pfam: SM-ATX LsmAD PAM2
Other DBs
NCBI-GeneID: 112247330
NCBI-ProteinID: XP_042176252
LinkDB
Position
LG04:complement(11974371..11997322)
AA seq 1077 aa
MSMKQAGGNRKPGSGAASGAGGSGGRQNLGRGRHSAKGPSAAVVSNGVYANMRMVHVLTS
LVGTNCELKVKNGMVYDGVFKTYSPECDLVLDAANIKSPGPSVGLRQEDLVDSIIFKASD
VVVVHFRDVDFNYARKVSTDTDNFTDTAVGGRINGEHKEKDLEPWDGGRQQHMVSGSLES
LDTDVSNGWDPNDMFKYNEEQYGIKSTYDSSLSTYTVALERDNSEEFLKREARAAQLAEE
IEASSTYKSRVALENDERSEEEKYTAVVRGEREQHTLNREKYIPPGQRNREGMSWGAGRQ
NSPRLVQSSSGPPRPGLHDYTPSSGADQRVVNGGATSCPSPSSRYQSGPSPLPPRAATPT
RPPSRPPSRPSRPPSHPSAHGSPAPISTIPSRRMSSEGPPRMSPKTQRTPRTHRVPPGSR
VPPGVDFMPHNAPGEVPPATRSSSSGGTWSSVVSGAHRPRSPRQNNMGGASPGPSPQTGS
TPVEPVNTPMSASSPTASPAPNMAATSAEAKDSRVQATRQNSPTVNKENMKPLESPPSIN
RPLSKGPPSMAPDHRKQIDNLKKFSVDFRLQSSSNPDPQFQQMVTKPPQDTGEKSKQLPL
DKGLEGSEGPVVPARSNKPDSSGAPSPSLSSTLCPAPEQNRGPDVTSQGVQTSAPNLSGG
AKPEDKEEDEADQMRKSTLNPNAHEFKPRVFTPQPKPATTPTPPRPQGQPSPSIVMQQPQ
QVYFPQMYPLTPVSPGVQKSIIWKSPAMYHVQMPHMTLSQSKPYRTGKVPNMPQQRSDQH
HPQGTPTMMHPAAGPPIVAQSPAYSAQYFTCSPQQFTSQQLMPHYQSQAQHVFSPVIQGQ
ARMMAPPTHGHPGQLVSSTSQYGEQTHTMYVSQGPMPQQYAHPNTTLHPHPQPSATPTGQ
SQQGVQHGGNHPAPSPVQQHQAAAAAQALHMGNQPQQQMYQALAPTPPSMTPGPNPQSPQ
GSFSSAQQAVYLHPQQMQHGYNPSHMAHMQQVSSTFRSPSLHSEYILYEQAHIQSGMVPS
HHGNPGHPPMMLMATQQQGGPQPQLAQNALNPIPVSSTAHFSYLAHPQVQQHHQQQL
NT seq 3234 nt   +upstreamnt  +downstreamnt
atgtcaatgaagcaggccggtggtaatcgcaaacccggcagtggcgctgcctctggtgcc
gggggaagtggcggacgacagaatttgggcaggggacggcatagtgccaaaggaccttca
gcagcagttgtctctaatggtgtatatgcaaacatgaggatggtccatgtcttgacatca
ttagtgggaaccaattgtgaactgaaagtaaaaaatggaatggtttatgatggagtgttt
aaaacatacagcccagagtgtgacctggttctggatgcggccaacatcaagagtcctggg
cccagtgtgggcctgcgacaggaagacctcgtggacagcattatcttcaaggcttccgat
gtggtggtggtgcacttcagagacgtggacttcaattatgccagaaaagtctctactgac
acagataacttcacggacactgcagtgggcggcagaatcaacggggaacacaaggagaag
gacctggagccgtgggatggagggcggcagcagcacatggtctcaggcagcctggagtct
ctggacacagacgtgtcaaatggctgggacccaaatgacatgttcaagtacaatgaagag
cagtatggcatcaagtccacctatgacagcagcctgtccacctacacggttgccctggag
cgggataactctgaggagtttctgaagcgggaggcgcgagcggcccaactggcggaggag
atcgaggccagctccacctacaagtcccgcgtggccctggagaatgacgagcgcagcgag
gaggagaagtacactgccgtggtgaggggagagagggagcaacacacactcaacagagaa
aagtacattcccccgggtcagaggaacagagaggggatgtcatggggagcgggtcgtcag
aactcccctaggttggtccagagcagcagtggacctccccggccaggtcttcacgactac
acccccagctctggagctgaccagcgggttgtcaacggaggtgccacctcctgcccatcg
ccctcctcccgctaccagtcaggcccctcccctctcccacccagggcggccacgcccacc
cggcctccatccagacccccctcgcggccctcccggcccccgtctcacccctctgctcac
ggctctccagctcccatctccactatacccagtagacgcatgtcctccgaaggccctccc
aggatgtccccaaagacccagcgtacccctcgcacccacagagttccccccgggagtaga
gtccccccgggagtagacttcatgccccacaatgctccaggagaggtgcccccggctacc
cgcagcagctcatccggtggcacctggtcttcagtggtcagcggagcacacagacctcga
tcccctcggcagaacaacatgggcggggcctctcctggtccctctccccagactgggtcc
actcccgtggaacctgttaacacgccaatgtcagcttcctcacctactgctagccctgcc
cccaatatggccgccacctcagcagaggcgaaagattctcgggtccaggcgacgagacag
aactctcctacggtcaacaaagagaacatgaaacccctggagagcccccctagtatcaac
agaccactctctaaaggacccccctccatggcaccagaccacagaaaacaaatagacaac
ttaaagaaatttagtgtagattttaggttgcagtccagctctaacccagacccacagttt
cagcagatggtgactaagcctccgcaggacacgggagagaagtccaagcagcttcctctg
gataaggggttggaggggtctgagggccctgtggtccccgccaggagcaacaagccagac
agctctggcgcaccatccccctccctgtcctctaccctctgtcccgccccggaacagaac
agggggcctgatgtgacctcgcagggcgtccagacatctgcacccaacttaagtggagga
gccaagcctgaagacaaggaagaggatgaggcagatcaaatgagaaagtcgactctgaat
cctaatgcccacgagttcaaacccagggtcttcactcctcagccaaagccagccaccacc
ccgaccccccctcggccccaaggccagcccagcccctctatcgtcatgcagcagcctcaa
caggtctactttccccagatgtaccctctgacccctgtcagccctggagtccagaaaagc
attatctggaagtctccagccatgtaccacgtccagatgcctcatatgacgctgagccag
tccaagccctacagaacaggtaaagtacccaacatgccccagcagaggtcagaccagcac
cacccccagggcacgcccaccatgatgcacccggccgcggggccgcccatcgtggcccag
agccctgcctactcagcccagtacttcacgtgtagcccacagcagtttaccagccagcaa
ctgatgccccactaccagtcacaggcccagcatgtgttcagcccggtgattcagggtcag
gccaggatgatggcccctcccacccacggccatcctggccagctggtctcttccacctcc
cagtatggtgaacagactcacaccatgtacgtgtcacaaggccccatgccgcaacagtat
gcccaccccaataccacactgcatccccacccccagccctcggccacccccacaggccag
tcccagcagggcgtgcagcacggtggcaaccacccggcccccagccctgtccagcagcac
caggctgctgcagctgcccaggccctgcacatgggcaaccagccccagcagcagatgtac
caggccctggcccccaccccaccctctatgaccccggggcccaacccccagtccccccag
ggcagcttctcctcggcccagcaggcagtctacctccatccccagcagatgcagcacggc
tacaacccctcccacatggcccacatgcagcaggtgagctccaccttcagaagcccttcc
cttcactctgagtacatactatatgagcaggcccatatccagtctggaatggtgccgtcc
caccatggtaaccctggccaccctccgatgatgctgatggccacccagcagcaaggtggc
ccccagccccaactcgcccagaatgccctcaaccccatcccggtgtcctccactgctcac
ttctcttacttggctcacccccaagtacaacagcaccatcagcagcagctgtag

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