Oncorhynchus tshawytscha (Chinook salmon): 112247493
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Entry
112247493 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent R-type calcium channel subunit alpha-1E-like
KO
K04852
voltage-dependent calcium channel R type alpha-1E
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112247493
04020 Calcium signaling pathway
112247493
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112247493
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
112247493
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
112247493
NCBI-ProteinID:
XP_042184768
LinkDB
All DBs
Position
LG10:complement(62888088..62957517)
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AA seq
2280 aa
AA seq
DB search
MHSIVMARFGDEVQMTMDSRDSGDPERVEDGGDTASGTGSGTLKQTKAARARTMALYNPI
PHRQNCLTVNRSLFIFAEDNLIRKTAKRIIEWPPFEWVILATITANCIVLALEQHLPGED
KTPMAKRLECTEPYFIGIFCFEFGIKLVALGFVFHKGSYLRNGWNIMDFIVVVSGILATA
GAHMNIPVDLRTLRAVRVLRPLKLVSGIPSLQIVLKSIMKAMVPLLQIGLLLFFAILMFA
IIGLEFYSGKLHHTCLPTADILENETMDTTEVEFACGVRKCPEKYDCVGSWIGPNDGITQ
FDNILFAVLTVFQCITMEGWTAVLYNTNDALGFMWNWIYFIPLIIIGSFFVLNLVLGVLS
GEFAKERERVENRRAFMKLRRQQQVERELNGYRAWIDRAEEVMLAEENKKSGRSALDVLK
RATSKNAKRRGGPGDAEISTIGAPRMRIRTVRRGPVAYMRRKERMLRISLRRMVKTDTFY
WTVLSLVFLNTICVAIVHHNQPDWLSTFLYYAEFVFLGLFLAEMFLKMYGLGFRLYFHSS
FNCFDCGVIVGSIFEVVWGFFRPGMSFGISVLRALRLLRIFKITKYWASLRNLVVSLMSS
MKSIISLLFLLFLFIVVFALLGMQLFGGRFIFEDYTPTNFDTFPAAIMTVFQILTGEDWN
EVMYNGIRSQGGVQYGMWSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEEE
EFFNARYARGTDGPMSEYRRRRRPYLRRKKAIHRGRMAVPEEEEESTAGGGADQPPNGTN
AFQPPXPTEEGGGRGGRSVWEQRANQLRKRRQMESQEVLFGGSPTEDTTDTPTTAYRAPT
LSPDASPGHLPESPMSGIMPMPEPPMSIAIPLPEPPDSEPVPLFTLAEERAVNHRPTGGE
RRHRVARKSRPGPGGAEEGGTARHRRHRHREARAEAKSRESPHEEVSESGSRERKILEER
EEKEEKDEKEVKGEFAEVEGGVSGKDEGGALIINLESEEEHLRVCIADIPEPPLCDNFPE
YLPPPLLEPPPQMEEGEVGETGQCEPLSQDPPVEPAPEQFADPSELQAAAGVSDSENNQA
SLNLEEAKESEQGPDSQTSVIIEMSGAQPLLEVTPMTALHSSKEVEMYHHERKEKKEEEE
SQVEKEEEEEASPPKPVPPGSMFLFKASNPIRRICHYVVTMRYFEMTILLVIVASSIALA
AEDPVCTNSDRNRVLRYFDYVFTGVFTFEMIIKMTDLGLLLHDGSYFRDLWNILDFIVVV
GALIAFALTNVIGNNKGRDIKTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVTSLKNVFN
ILIVYQLFMFIFAVIAVQLFKGKFFYCTDSSMDTEKECQGYYIDYARDKKEVKKREWKRH
EFHYDNVCWALLTLFTVSTGEGWPQVLQHSVDVTEEDMGPSRGNRMEMSIFYVVYFVVFP
FFFVNIFVALIIITFQEQGDKMMEECSLEKNERACIDFTISAKPLTRYMPQNRQTFQYRL
WHFVASPSFEYTVMVMIALNTVVLMMKYYSAPAAYDTVLKHLNTAFTVLFSLECILKIMA
FGFVNYFRDTWNIFDFITVLGSITEIIVDLQSINTFNMSFLKLFRAARLIKLLRQGYTIR
ILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIKLNDENHINQHNNFKTFSGALM
LLFRSATGESWQEIMLSCLGGQECEPDSSMAPMTMSPDHEGGCGTDFAYCYFVSFIFFSS
FLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFVRVWGEYDRAACGRIHYTAMYEMLTHM
SPPLGLGKKCPRGMAYKRLVLMNMPVDEDMSVHFTSTLMSLIRTALEIKIARGQGMSGED
RVALDTELQKEISVIWPYLPQKTLDVLVPINKDSDMTVGKIYASMMIMDYFKQNKAKKLR
AQLEAQKASLMPFQRLDASTLSEDILSNAQPLPCMPHSAGSALTRGGLVALSPLSPQDLL
NMQPMTSDTDTRSQHSRTEMASGSMKRSSSAVADQRVNGLRQEEKKSPDRLYRPRHKSYK
AAVSRSERKRQLDTEKERGRSKERRHLLSPDTSRCTSEERSLQPSRSPSREHTHPLDKQG
NSSDSPLPTSESSTPSRRPLSQTSTRSHPHISYSPLVCRTHPPSGDDDDDRGSPETQRRG
EASRDRAGGEGQSGARGRRHQQGSPLRRYPSEPYLALQEDEHSLDPTGFMETLTFEAAVA
TSLGRANTVSSTSSSSFSSARRGSRSSWQVPNGHFRKRLAQTVSVAGCEPLSDTEEDDRC
NT seq
6843 nt
NT seq
+upstream
nt +downstream
nt
atgcattctatagtaatggctcggtttggagatgaggttcagatgacgatggattcccga
gactccggggacccggagcgcgtggaggacggcggggacacggcttcaggtacagggtca
gggacgctaaaacaaaccaaagcggcgagggcgcgcaccatggctctctacaaccctata
ccccaccggcagaactgcctcactgtcaacaggtcgctcttcatattcgccgaggacaat
ttaattcggaaaaccgccaagaggatcatagaatggccaccgtttgagtgggtaatcctg
gcgaccatcacggccaactgcatcgtcctggccctggagcaacatcttcctggggaggac
aagacccccatggccaaaagactggagtgtactgagccttacttcattgggatcttctgt
tttgagtttggcatcaagcttgtggccctgggctttgtgttccataaaggttcctatctg
aggaatggatggaatatcatggacttcatcgtggtggtcagcggaatcctggctacagca
ggggcccacatgaacatccccgtggacctgcggactctgagggcggtgcgagtcctgagg
cctctcaaactggtctctgggatccctagcttgcagatcgtgctgaagtccatcatgaag
gccatggtccctctgctccagatcggcctgctcttgttcttcgccattctcatgttcgcc
atcatcggcctggagttctacagcgggaagctccaccacacctgtctacctacagctgac
atcctggaaaatgagacgatggatacgactgaggtggagtttgcgtgcggagtgaggaag
tgtccagagaagtacgactgtgtcgggtcatggatcggccccaacgacggcatcacccag
tttgacaacatcctgttcgctgtgctcactgtcttccagtgcatcaccatggagggatgg
acagctgtgctctacaataccaacgatgccttgggctttatgtggaattggatctacttt
attcctctcatcatcatcggctctttcttcgtactcaacctggtgttgggagtcctctcc
ggggagtttgccaaagagagggagcgggtggagaaccgtagagccttcatgaagctgaga
cgccaacagcaggtagagagagaactcaacggatacagagcctggatagaccgagcagag
gaggttatgctggctgaggagaacaagaagtcggggagatctgctttagatgtgctgaag
cgggccaccagtaaaaatgcaaagcgtagaggaggtcctggggatgcggagatctccact
ataggagcacctcgtatgcggatccgtacagtgcggcgtggcccggtggcgtacatgcgt
cgtaaggagcgtatgctgcgtatctccctgcggcgcatggtgaagacagacaccttctac
tggactgtcctcagcctggtgtttctcaacaccatatgtgtggccattgtccaccataac
cagccagactggctctccaccttcctgtactatgcagagtttgttttcctggggctcttc
ttggcagagatgttcttaaagatgtacggcctgggattccgcctctatttccactcctca
ttcaactgcttcgactgcggagtgatagttggcagcatctttgaggtggtgtggggcttc
ttccggcctggcatgtcctttggcatcagcgtcctgagggcactgagactcctgaggatc
tttaagatcaccaagtactgggcatcactgaggaacctggtggtgtctctcatgagttcc
atgaagtccatcattagtctgctctttctcctcttcctcttcattgttgtcttcgccctg
ctgggcatgcagctctttgggggcaggttcatctttgaagattacactcctaccaacttt
gacacgtttccagctgccatcatgacagtgttccagatcctgactggtgaggactggaat
gaggtgatgtacaatgggatccgctcacaaggaggagtgcagtacggaatgtggtcctcc
atatacttcatagtgctcaccctgtttgggaactatacactgctcaacgtcttcttggcc
atcgctgtggataaccttgccaacgcacaggaactcaccaaggacgaagaggaggaagag
gagtttttcaatgcaagatacgccagaggcacagatggcccgatgtctgagtacaggagg
aggaggcggccctacctccgcaggaagaaggccatccacaggggccgtatggccgtcccc
gaggaggaggaggagagcactgctgggggcggagccgaccaaccccccaatggcaccaat
gccttccaaccgccgtgaccgacggaggaggggggaggaagaggaggaaggtccgtgtgg
gagcagagggccaaccagctacgcaagcggcgccagatggagagccaggaggtcctattc
ggaggcagccccaccgaggacaccactgacacccctaccaccgcctaccgcgctcccacc
ctctccccagacgccagccccggtcacctgcccgagtcgcccatgtccgggatcatgccc
atgcctgaacccccgatgtccatcgccatcccactaccggaacccccagactcggagcct
gtgcctctgtttacgttagctgaggagagagcagtgaaccatcgccccaccggtggggaa
aggaggcacagggtggcccggaaatccagacctggccctgggggggcggaggagggaggg
acggcgcggcataggaggcaccgtcaccgtgaggcccgggctgaggccaagagcagagag
tccccacatgaggaggtcagtgaatcaggcagccgcgagaggaagatattggaagagagg
gaggagaaggaggagaaagacgagaaggaggtcaaaggagagttcgctgaggtggaggga
ggagtgtcaggcaaggatgaaggaggagcccttattatcaacttagagagtgaagaagag
catctgagggtgtgtattgcagacatccctgagcctcccctatgtgataacttccctgag
tacctacccccacccctgctggaacctccaccccagatggaggagggtgaggtgggggag
actgggcagtgtgagcccttgtcccaggaccctccagtggagccagccccagaacagttc
gcagacccctcagagctccaggcagcagcaggggtcagtgactcagagaacaaccaagcc
tccctgaaccttgaggaggctaaggagtctgagcaaggcccagacagccagaccagtgtg
atcatagagatgtctggagcacagccactgctggaggtcacccccatgacagcattacac
agcagcaaggaggtggagatgtaccatcatgagaggaaggagaagaaggaggaggaggag
tcgcaggtggagaaggaggaggaggaggaggctagcccgcccaaacctgtacctcctggc
agcatgttcctcttcaaggcctccaacccgatcaggaggatctgtcactatgtggtgacc
atgcgctactttgagatgaccatcttgctggtgatcgtggctagcagcatcgctctggct
gctgaagaccctgtgtgcaccaactctgacagaaacagggttctccgttactttgattac
gtctttactggagtcttcacgtttgaaatgattataaagatgactgacctgggactgctt
cttcatgatggctcctacttccgtgacctgtggaacattctggacttcatcgtggtggtg
ggagctctaatcgccttcgctctgacgaatgtgattgggaacaacaaaggcagagacatc
aaaaccatcaagtccctcagggttttgagagtcctacgacctctgaagaccatcaagaga
ctccccaaactcaaggcggtgtttgactgtgtggtgacatctttgaagaacgtcttcaac
atcctcatcgtctaccagctcttcatgtttatcttcgctgtcatcgccgttcagctcttc
aagggaaagttcttttactgcactgacagctccatggacacagagaaggagtgccaaggt
tactacattgactacgctcgagacaagaaggaagtgaagaagagggagtggaagaggcat
gagttccactatgacaacgtgtgctgggctctgctcactctcttcactgtttcaactgga
gagggctggccgcaggttctgcagcactctgtggacgtgacagaggaggacatgggtcca
agtcggggcaacaggatggagatgtccatcttttacgttgtctactttgtggtcttccct
ttcttctttgtcaacatcttcgtcgctctcatcatcattaccttccaggaacagggtgat
aagatgatggaggagtgtagcttggagaagaacgagagggcatgcattgactttaccatc
agtgccaagcccctgacgcgctacatgccccagaacagacagaccttccagtaccgactg
tggcactttgtggcgtcaccatcgtttgagtacacagtgatggtcatgatcgccctcaac
actgtggtgctcatgatgaagtactactcagctccagcagcatatgacacggtactgaag
cacctgaacacagccttcactgttctcttctccctggagtgtatcctcaagatcatggcc
tttggttttgtgaactattttcgagacacttggaacatttttgacttcatcactgtgctc
ggcagcatcactgagatcattgtggatttacagtcaataaacacattcaatatgagtttc
ctgaagctgttccgggctgccagactgatcaaactgttgaggcagggctacaccatacga
atcctgctctggacctttgtacaatccttcaaggctcttccttatgtttgtctgctcatt
gccatgctgttcttcatctatgccatcattgggatgcaggtgtttggaaacatcaaactg
aacgatgaaaaccatatcaaccagcacaacaacttcaagaccttttccggtgcactgatg
cttctcttcaggagtgcgacgggggagtcatggcaggagatcatgctatcgtgtctgggg
gggcaggagtgtgagccagactcctccatggcacccatgaccatgtcccctgaccacgag
ggaggctgtggtactgactttgcctactgctactttgtctccttcatcttcttcagctct
ttcctgatgctgaatctgtttgtggctgtgatcatggataactttgagtatctgaccaga
gactcttccatcctgggtcctcatcacctggatgagtttgtccgtgtctggggagagtac
gaccgtgcagcatgtgggcgtatacactacaccgccatgtatgagatgttgacccacatg
tctccacccctgggcctggggaagaaatgccccagaggtatggcctacaagaggctggtg
ttgatgaacatgccagtggatgaggacatgtcagtccacttcacctctaccttgatgtct
ctcatccgcactgctctggagatcaagatcgcacgaggtcagggaatgagtggggaggac
cgagtagctctggacactgagctacagaaggagatcagtgtgatatggccgtacctcccc
cagaagaccctggatgtactcgtgcccatcaacaaagattctgacatgacagtaggtaag
atatatgcctccatgatgatcatggactacttcaaacagaacaaagccaagaagctgaga
gcacagctggaagcacagaaggccagtctgatgccgttccagcggctggatgcctcgacc
ctctctgaagacattctgtccaatgctcagcccctgccctgcatgccccacagtgctggc
tccgccctgaccagaggaggcctggtggcgttgagtcctctctccccccaggacctgctc
aacatgcagcccatgacctctgacacggacaccagaagccaacactccaggaccgagatg
gccagtggctctatgaagcggtcctcgtccgctgtggctgaccagagggtgaatggcctg
aggcaggaggagaagaaaagtcctgatagactgtacagaccacgccacaagagctacaag
gctgctgtgtcgcggtcagaaaggaagaggcagttggatacggagaaggagcgcgggagg
tctaaagagcgccgccacctcctctccccagacacgtcccgctgtacctccgaggagagg
agcctgcaaccctcacgctcccctagccgtgagcacacacaccccctggacaaacagggc
aacagctccgacagccccctccccacctctgaatctagtacccctagccgccgccctcta
tcccagacctcaacacgctcccatccccacatctcatactctcctctggtgtgtcgcacg
caccctccctcaggggacgatgatgacgacaggggcagcccagagactcagaggagaggg
gaagcctccagagaccgggcagggggagagggacagagtggggcgaggggccgtcgccac
cagcagggctctcccctgcgtcgctacccgtcggagccctacctggccctgcaggaggac
gagcacagtctggaccccaccgggttcatggagacgctgactttcgaggcggcggtagcc
accagcctgggacgtgctaacacggtcagctccacatccagctccagcttcagctccgct
cgacggggttccaggagcagctggcaggtccccaatggacacttccggaaacgcctggct
cagacggtctctgttgcgggctgtgagccactcagcgacacagaagaggacgaccgctgc
tag
DBGET
integrated database retrieval system
