Oncorhynchus tshawytscha (Chinook salmon): 112247599
Help
Entry
112247599 CDS
T05605
Name
(RefSeq) rap guanine nucleotide exchange factor 2 isoform X1
KO
K08018
Rap guanine nucleotide exchange factor 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112247599
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112247599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
PDZ
RasGEF_N
PDZ_6
RA
cNMP_binding
PDZ_2
Motif
Other DBs
NCBI-GeneID:
112247599
NCBI-ProteinID:
XP_042159086
LinkDB
All DBs
Position
LG21:18163471..18327331
Genome browser
AA seq
1660 aa
AA seq
DB search
MASYVDNSFRQAVMMNPAERTQQDLEIVYSYLHGMEALSNLREHQLRIMCETVRYERHEA
NEVLYYPDDIGSCWYILLSGSVFIKESMFLPRSSFGKRSAGSLRRGCECIVLEPSEMIVV
DYMEENEEYFQRQASHRQSRRRFRKINQKGERQTIIDTVDPYPTGKPPIVRGYHTECSKA
QLPADFSRLHLADGLHPQVTHVSSSHSGCSVTSDSGSSSLSDIYQATENEPGDMDLSGLP
ETAVDSEDDDDEEDIERASDPLMSRDIVRDCLEKDPMDRTDDDIEQLLEFMHQLPAFANM
TMSVRRELCAVMVFAVVERAGTIVLNDGEELDSWSVILNGSVEVTYPEGRPEILCMGNSF
GVSPTIEKEYMKGVMKTKVDDCQFVCIAQQDYCCILNQVEKNMQKVEEEGEIVMVKEHRE
LDRTGTRKGHIVIKGTKERLTMHLVEEHSVVDPTYIEDFLLTYRTFLSSPMVVGNKLLEW
FHDPSLRDKVTRVVLLWVNNHFNDFEGDPAMTHFLEEFENNLEREVRVSKMYGHLRLLNI
ACAAKAKLRLVTLTKPSREAPLAFTLLGGSEKGFRIFIDSVEPGSKAAEAGLKRGDQILE
VNGQNFENVQLTKANEILRNNTHLSISVKTNLLVFKELLARPEHDHEAEGEEPPEVDRKN
GAPAHLPKIGDIKKGSRYSIPDLAVDVEQVMGLEKASKKAKANTVGGRNKLKKIFDKTLT
SILPPKPYNDVGVGQSQDDSIVGLKQSKQIPAALPVSGSLSSSNPDLLQSHHRILDFNNQ
PAPVVTNMSDQVLRVFKADQQSRYIMIGKDTTAKEVVAQAIREFALTAVPEAYSLCEVSI
TPEGVIKQRRLPEQLSKLADRIQLSGRYYLKSNMETETLCSDEDAQDLLREGQISLLQLS
TMEVATQLSMRAFELFCAIEPTEYIDDLFKLKSKTGSFCLKRFEEIINQETFWVASEVTR
EPNQLKRMKTVKHFIKIALHCRECKNFNSMFSIISGLNLAPVSRLRGTWEKLPSKYEKLF
GDLQDLFDPSRNMAKYRNVLNNQNLQPPIIPLFPVIKKDLTFLHEGNDSKVDGLVNFEKL
RMIAKEIRHVGRMASVNMDPALMFRTRKKKWRSLGSLSQGSANAAVLDVTQTGGHKKRVR
RSSFLNAKKLYEDAQMARRVKQFLSNLSLETNEEALQTLSLQCEPSINTLPKNAGGSKRP
DTSPVVSRAASQQRGQLQKGNQALQVPAVALYPSRKKVPVKDLPPFGTSSPQSLKKILSL
SEEASKRQTEDTVTSNNTSQLSSPPTSPQSSPKKGYPRTGDAYSDSGHSEISSRSSLVSN
SSFDMAQEERRGLRHSGGVGDPHAGGVRLERRATTDPDQYSLGSYSSMQDCRGLYTCATV
LSPSSEELTQDQGDRVSLDAADSGRGSWTSCSSGSHDNIQTMQQGRSWETLAFGPGGVVS
VGVHPPGGPEAFIGVPSGLWASQARGSWASASSSSSSAAYWGEDSEGDTGTIKRRGGKDV
NADPETSSITSMGSDEAKQHGRPSPITAGNKGLITRKESRYREPPPTPPGYTALTISDFS
EGQTQSPPPPTAPSHSGRRPPDYSTALQRSRMVTQSPDSQHHHQAQQHPGSGTTKRHGLH
RTRSPDEDEEPEEEEGESLSPKLVALRKTVAHTTPETTRP
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttatgtggataacagttttcgtcaagctgtgatgatgaatccggcggaaaga
acgcaacaggacctggagatagtctactcctatctgcatggaatggaggccctgtctaac
ctccgagaacaccagctgaggataatgtgtgagacagtgcgctatgaaagacacgaagcc
aatgaagtgctctattacccggatgacatcggaagctgctggtatatcctactgtccggc
tctgtcttcatcaaggagtccatgttcctgccaagaagcagttttgggaagcgttctgca
gggagcctgagacgtggatgtgagtgcatcgttctggaaccttcggagatgattgtggtg
gactatatggaggaaaatgaggagtacttccagaggcaagcatcacatcgtcagtcccgc
cgcaggttccgcaagatcaaccagaaaggcgagcggcagaccatcatcgacacggtggac
ccgtaccccaccggcaagccacccatagtcaggggatatcacacggaatgcagtaaagct
cagctccccgcagacttcagccgactccacctggccgacggcttgcacccacaggtgacc
cacgtgtcttccagccactcaggatgtagtgtcaccagcgactctggaagcagcagcctg
tcagacatatatcaggccacggaaaacgagccaggcgacatggacctcagcggcctgccc
gagaccgccgtcgactccgaggacgacgatgacgaggaggacattgagagagcgtcggac
cccctcatgagccgcgacatcgtgcgggactgcctggagaaggacccaatggaccgcacc
gatgacgacatagagcaattactggagttcatgcatcagctgccagcgtttgccaacatg
accatgtctgtgaggagggagctgtgtgccgtcatggtgtttgccgtggtcgagcgggcc
ggcaccatcgtactcaatgacggggaagagctggactcgtggtcagtgatcctgaatggc
tcggtggaggtgacgtaccctgagggcaggcctgagatcctgtgtatgggcaacagcttc
ggggtctcccctaccatagagaaggagtacatgaagggagtgatgaagactaaggtggac
gactgtcagtttgtgtgcatagcgcagcaggactactgctgcatcctcaaccaggtggag
aagaacatgcagaaggtggaggaggagggcgagatcgtcatggtcaaggagcaccgtgag
ctggaccgcaccggcaccaggaagggacacatcgtcatcaagggcacgaaggagcgtctg
actatgcacctggtagaggagcactctgtggtggaccccacctacatcgaggacttcctg
ttgacctacaggactttcctctccagccccatggtcgtgggcaacaagctcctcgagtgg
ttccacgacccaagcctcagggacaaggttacacgggtcgtcttgctgtgggtgaacaat
cacttcaatgactttgaaggcgaccctgcaatgactcactttcttgaagagtttgagaac
aatctggagagagaggtccgtgtctcaaaaatgtacggccaccttagactgttaaacatt
gcctgcgctgctaaagccaaactgcgactagtgacactgaccaagccatccagggaggcc
ccgctagccttcaccctgctggggggctccgagaagggcttccgcatcttcatcgacagc
gtggagcctggaagcaaggccgcggaggccggccttaaacgaggagaccagatcctggag
gtgaacgggcagaactttgagaatgtccagctcacgaaagccaatgagatcctgaggaac
aacacccacttgtcaatttctgtgaaaactaatcttttagtgttcaaggagctccttgcc
cgaccagagcacgaccacgaggcagagggtgaggagccgcccgaggtggaccgcaagaat
ggcgccccggcacacctgcccaagatcggggatatcaagaagggctcacgctactccatt
cctgacctggcggtggatgttgagcaggtgatgggcctggagaaggccagcaagaaggcc
aaagccaacacggtggggggaaggaacaagctcaagaagatctttgacaagacgctcacc
agcatcctgcccccaaaaccatacaacgacgtgggcgtgggccagtcgcaggacgacagc
atcgtgggcctgaagcagtccaaacagattccggccgcgctgccagtcagcggcagcctg
tcgtccagcaaccctgacctgctgcagtcccaccaccgcatcctggacttcaacaaccag
cctgccccggtcgtgacgaacatgtcagaccaggtgctgcgggtgttcaaggcagaccag
caaagtcgatacatcatgatcggtaaggacaccacggccaaagaggtggtggcccaggcc
atccgggagtttgccctgactgcagtgcccgaagcctattccctgtgtgaggtgtccatc
acaccggaaggcgtcattaagcagcgccggctcccggagcagctgtccaagctggcagac
aggatacagctcagtggcagatactacctgaagagcaacatggagacagagaccctctgt
tcagacgaggacgcccaggacctccttcgtgaaggccagatctcccttctccagctgtcc
accatggaagtagccacgcagctgtccatgcgcgccttcgaactcttctgcgccatcgag
cccaccgagtacattgatgacctgttcaagctcaagtccaagacgggctcgttttgcctc
aagcgcttcgaggagattatcaaccaggagaccttctgggtggcgtcggaggtgacccgg
gagcccaaccagctcaagcgcatgaagacggtcaagcatttcatcaagatagctctccat
tgtagagagtgcaagaacttcaactccatgttctccatcattagtggtctgaacctggcc
ccagtatctagactccggggcacgtgggagaagctgcccagtaagtacgagaagctgttc
ggggacctgcaagacctgtttgatccatccaggaacatggccaagtatcgcaatgtgctc
aacaaccagaacctccagcctcccatcatccccctgttccccgtcatcaagaaggacctc
accttcctgcatgaagggaacgactctaaagtggacggcctggtgaactttgagaagctg
cggatgatcgccaaagagatccgccacgtgggtcgcatggcctccgtcaacatggaccca
gcgctcatgttcagaaccaggaagaagaaatggaggagtttaggttctcttagccagggc
agtgccaatgcggcggtgctagacgtcacccagacgggcgggcacaagaagcgggtaagg
cgcagctccttcctgaacgccaagaagctgtatgaggatgcccagatggcccgcagggtc
aagcagttcctgtccaacctcagcctggagaccaacgaggaggcgctgcagaccctctcg
ctgcagtgtgagccctccatcaacacactgcccaagaatgctggtggcagtaagaggcca
gacacgtctccggtggtgtccagggctgccagccagcagaggggccagctgcagaagggc
aaccaggccctccaggtgcctgctgtggctctctacccctcacgcaagaaagtacccgtc
aaggacctgccaccattcggcacgagttcccctcagtcgttgaagaagatcctgtcactg
tcagaggaggccagcaagcgtcagactgaggacactgtaacatccaacaacacctcgcag
ctctcctccccgcccacctcaccacagagctcgcccaagaagggctaccccagaacagga
gatgcctactcagactcgggtcacagcgagatctcatcgcgctccagcctggtcagcaac
tcctcctttgacatggctcaggaggagaggagggggctcaggcactccggcggggtggga
gacccccacgctggaggggtgcgtctggagaggagggctacgacagacccggaccagtac
agtctcggttcctactcatccatgcaggactgccggggtctgtatacctgtgccacggtg
ctatctcccagctctgaagagctgacccaggaccaaggggaccgtgtctccctggatgct
gcagacagtggccgcggctcctggacctcgtgctcctcgggctcccacgacaacatccag
accatgcaacagggacgcagctgggagaccctggccttcgggccgggtggtgtggtcagc
gtaggtgtccatcctcccggggggcctgaagcgtttataggggtcccctctggactgtgg
gcgtctcaggctagagggagctgggcatcggcctcttcttcatcttcctctgcagcgtac
tggggcgaggactcggagggtgacacgggcacgattaaacgcagaggcgggaaagacgtg
aacgctgacccggagacgagtagtatcacgtccatggggtctgacgaggccaagcagcac
gggaggccatcgcccatcaccgccggcaacaagggtcttatcacacgaaaggagagtcgg
taccgcgagccccctcccaccccgccaggctacaccgccctgacaatctctgacttcagt
gagggccagacgcagtcgccacccccgcccacggccccatcccactctggccgccgccca
cccgactactccacggccctgcagcgctcgcgcatggtcacccagtcgcccgactcccag
catcaccaccaggcccaacaacacccaggttccggaaccacaaagcgccatgggctccac
cgcacccgctcgccagacgaggatgaagagccggaggaggaagagggtgagtccttgtct
cccaaactagtcgctctgaggaagacagtggcacacacaacaccagagacaaccaggccc
tga
DBGET
integrated database retrieval system
