Oncorhynchus tshawytscha (Chinook salmon): 112247792
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Entry
112247792 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase complex subunit SAP130-like
KO
K19192
histone deacetylase complex subunit SAP130
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112247792
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
112247792
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SAP130_C
FHBP_N
Motif
Other DBs
NCBI-GeneID:
112247792
NCBI-ProteinID:
XP_042178549
LinkDB
All DBs
Position
LG05:86898251..86949663
Genome browser
AA seq
1106 aa
AA seq
DB search
MSSQPFSTAGMPAQSNPGGKPVSINQSSKQPAGPGEDSSGDVDHHGPKDHPASSRGGEEA
LLFREDKQETGVVRPYPQVPVQTHSLQSLVPALSQQVPNKAGTPGQPVTVFNPPVQLLQA
QPAALVDGQIKAALKSLLPSRLIAPAPASSQGQGGHIPLPLPPKVQPALLGHITVTLESH
IAPTSSIPVATISGQQGHSSNRHHLVPANIQIIRSPSVPQHTFTSHLPRGAVAAAVMSSC
KGPAVLRPASGASAGPIQHTVHHVNHQSIQSRSPVTSSTAVVPISATRNQSPVINPTFTQ
SAEVLHGHPGLTIHPPPATISIQRPQGTRDTATRITLPSHPAIGGQKPQPPHTMTQKSIF
CSGTPVAAATVAPILTTTTTTGPGTTTTGTAPHTQMTSSTIVTMTMPTHSSHTTALTTST
IPVAKVVPQPIAHTSPRVQSDYLGERTNLIQPIAHTSPHVQSDYQPIAHTSPRVQSDYPV
ERTNLISISGNRSSPNPVTIEARSDRPPVPVHFQYFLPTFSSSPYPRTHTYTPITSSVST
IRQYPVTPQTPSSALPSQPAVAVATTVHLNPMQLMAVDRIGLQSAQISTQGIQPQPIGAQ
GIQPAPMGVQGLHSSGPIGTQGIQQATIAGQQPEAKPSGMVLADGSTFVAAPMGSPFGAA
QPVATMVQTHPQGGVGGGGPTLVSSPRPSILRKKPANEGXVNQSINQSGPGEANSSRVEG
GVRGAGPPRPAGVKPKAEGHMTMLAPPVLVMAAVESLPSQGGVEQQAVSSPAQAIPSNLL
APRGPPPPSQPSSNTHLSALSAAMAVTPPGPASMANTVASPTQPAASSTAACSGGSAHTE
VKIKQEVESMEMYQPVPQPSANSGLITQPRQAGSPHGTPSSGDLVPGASPRKKPRKQQHV
ISTEETEMVETNSTDEDRAMGHRPLGSRAKRRESPPREYVDEEGVRYVPVRPRPPVTLLR
HYRNPWKAAYHHFQRYSDIRIKEEKESLQEVANQRGVARRAQGWKMHLCVAQLMQLSNLE
HDVYSRLTSLQEGLIPKKRAGVDDELHRINELIQGNMQRCKLVMDQVTEARDTMMKVLDH
KDKVLKLLNQNGAVKKSNKLKRKDRT
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgagttctcagccattttctacagctggaatgcctgctcagagtaatcctggtggaaag
ccggtctccatcaatcagtcatccaaacagccagcaggaccaggtgaggacagtagtggt
gatgtggaccaccatggtccaaaggaccatccagccagcagcaggggaggagaagaagcc
ctgttgttcagagaagacaagcaggagactggagtggtcagaccctacccccaggtcccg
gttcagacccacagcctgcagtccctggtcccagctctgtcccagcaggtgcccaacaag
gcaggtacacctggtcaacctgtcaccgtcttcaaccctcctgtccaactactgcaggcc
cagcctgctgccctcgtcgacgggcaaattaaggctgccctgaaatcgctgctacccagt
cgtctcatcgccccagctccagcctccagccagggccaggggggtcacatccctctccct
ctgcctcccaaggtgcagcctgccctgcttggccacatcactgtcaccctggagagccac
atcgctcccacctcctccatcccagtggcaaccatcagtggacaacagggccactccagt
aatcggcatcacctcgtgccagctaatatccagataattaggtctccttctgttcctcaa
cacacattcacctctcacctaccaagaggggcggtggctgcagcagtgatgtccagctgt
aaagggcctgctgttctcagaccagcatcaggggccagtgcaggccccattcagcacact
gtacatcacgtcaaccaccagtctatccagtcccgttcccctgtcaccagctctacagca
gtggtccccatatcagccacccggaaccagtcccctgtcatcaacccaacgttcacccag
tctgcagaggtgctgcatggacatccagggctgaccatccaccctcctcctgccaccatc
agtatccaacgtccccaggggaccagggacacagccactcgcatcaccctgccctcccac
cctgctataggggggcagaaaccccagcccccccacaccatgacacagaaatccatcttc
tgttctgggactccggttgctgctgcaacggtggcacctattctaaccaccaccaccact
actggcccaggcaccaccactacaggcactgcgccacacacccagatgaccagcagtact
atcgtcaccatgacgatgcccacacactcctcccacaccacagcactgaccacctctacc
atcccagttgctaaagtggtacctcagcccatagcccacacctccccccgtgtccagtca
gactaccttggagagaggaccaacctgatccagcctatagcccacacctccccccatgtc
caatcagactaccagcccatagctcacacctccccccgtgtccaatcagactatcctgta
gagaggaccaacttgatctccatctctggcaaccgctcctctcctaaccctgtcaccatc
gaggccaggagtgacaggccgcctgtaccagtgcacttccagtacttcctgcctactttt
tcctcttcaccttacccccggacacacacctacacccccatcaccagctccgtgtccacc
atcagacagtacccagtgacgccccagaccccgagctctgctctgcccagccagcctgct
gtggccgtggccactactgttcacctcaaccccatgcagctgatggccgtggacaggatt
ggtctacagtctgcacaaatcagcacccagggaatccagcctcaaccaattggagcccag
ggcatccagcctgcaccaatgggagtgcaggggttacatagctccggtccaatcggcaca
caggggattcagcaggcaacaatcgcagggcagcagcctgaggccaaaccatctgggatg
gtattggctgacggcagtacgtttgtagctgctcctatgggcagcccgtttggcgccgca
cagcccgttgctaccatggtacagacacacccccagggcggagtaggaggcggagggccc
actttggtctcttcccctcgacccagcatcctccgcaagaagccagccaatgaggggtga
gtcaatcagtcgatcaatcaatctgggcctggtgaggctaacagcagcagagtggaggga
ggagtgagaggagcaggaccacctagacctgcaggagtgaagcctaaagcagagggtcac
atgaccatgttggctcctccagtcctagtcatggctgcagtggagtctctaccctcccag
ggaggagtggagcagcaggcggtctcctccccagcccaggctatcccctccaacctgctg
gccccccgtggtcctccacccccctcccagcccagctccaatacccacctctctgccctg
tcggccgccatggccgtgacaccccctggccccgcctccatggccaatactgtcgcctcc
cccacccagcccgcagccagtagcacggcagcatgcagcggaggttccgcccacacagag
gtcaaaatcaagcaggaggtggagtctatggagatgtatcaaccagtgccccagccctcg
gcgaactcaggcctcatcacccagccccgccaggccgggtccccccacgggaccccctcc
tcaggggacctggttcctggtgcctcccccaggaagaagccccgcaaacagcagcacgtc
atttccacagaagagactgaaatggtggagaccaacagtacagatgaggacagggctatg
ggccacaggcccctgggcagcagggctaagaggagagagtcccctcccagagagtatgtg
gatgaggaaggggttcgttacgtccctgtcaggccgcgcccacctgtcactctgctgcgt
cactataggaacccctggaaggcagcctatcaccacttccagaggtacagcgacatccgg
atcaaagaggagaaggagtcgttacaggaagtggccaatcagagaggagtagcacggcga
gctcagggatggaaaatgcacttgtgtgttgctcagctcatgcagctgtcaaacctggag
catgatgtgtatagcagactgacttcccttcaggaggggctaatccctaagaagagggcc
ggggtcgacgacgagctgcaccgcattaacgaactcatacagggtaacatgcagcgttgt
aagctagtgatggaccaggttacagaggcccgggacactatgatgaaggttctggaccac
aaagacaaggtcctgaagctgctcaaccagaacggagctgtcaaaaagtctaacaaactg
aaacgtaaggatcggacctag
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