Oncorhynchus tshawytscha (Chinook salmon): 112247802
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Entry
112247802 CDS
T05605
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04517
IgSF CAM signaling
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112247802
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112247802
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112247802
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112247802
Intermediate filaments
Intermediate filament-binding proteins
112247802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
112247802
NCBI-ProteinID:
XP_024272396
LinkDB
All DBs
Position
LG32:35502..147681
Genome browser
AA seq
2348 aa
AA seq
DB search
MTTVAAEYEHMEITQQYSSSDTVNSRWDDEWDNENSSAHLFERSRIKALADEREAVQKKT
FTKWVNSHLSRVSCRITDLYRDLSDGRMLIKLLEVLSGERLPKPTRGRMRIHCLENVDKA
LQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETDGDNKEKRSAKDA
LLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHHNLQNAF
NLAEQHLGLTKLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAI
ETEKMIEKYESLASDLLEWIEQTIIILNNRKFANSLNGVQQQLQAFNTYRTVEKPPKFTE
KGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKTWERLEKAEHERELSLRTELIRQE
KLEQLARRFDCKAAMRETWLSENQRLVSQDNFGFDLPAVDAATKKHEAIETDITAYEERV
QAVVSVAKELEAEKYHDIKRIAARKDNVIRLWEYLLELLKSRRQRLEMNLGLQRVFQEML
YIMDWMDEMKMMLLSQDYGKHLLGVEDLLQKHALVEANIGIQADRVKAVNNNAQKFAIDG
DVYKPCDPQVIRDRVAHTEFCYQELIQLAAERRARLEESNRLCKFFWEMAEEEGWIREKE
QILLSDESGKDLTGTVRLLSQHRTLENEMSGRAGHLQHTITEGQAMADGGHFGAAKIRER
ITNLRAQWAALEELAAVRKAHLEEAYALHQFQVDADDADAWTLDALRIVSSGEVGHDEFS
TQALVRKHKDAAAEVASYRPVIDALHEQAGALPEAQVQSEQVKGRLAGIEERYKEVAELT
RFRKQALQDALALYKMFSEADACEMWIDEKEQWLNSMEIPEKLEDLEVIQHRFESLEPEM
NNQASRVAVVNQIGRQLMHNGHPSEKNIKAQQDKLNNRWSQFRDLADQKKESLISALGVQ
NYHLDCNETKSWIREKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEDKLGDLRGE
AERLAGEHPDQAKAIKGRLAEITAVWEEMKTTLRNRELSLGEASKLQQFLRELDDFQSWL
SRTQTAVASEETPNTLAEAEKLLAQHEGIKNEICNYEEDYQKMRDMGEMVTQGQTDAQYM
FLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTTQAEAFLNNQEYMLAHTEMA
TTLEGAEGAIKQQEDFMTTMDANEEKINSVVEAGRRLATDGNADRIQERATSIDDRHKKN
RKAALELLMRLKDNRDLQKFLQDSQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQAFM
AELQSNKEWLDKIEKDGMQLVLEKPETESVVKEKLSALQKMWEVLESTTQTKAQCLFDAN
KTELFTQSCADLDKWLGGLEGQIQSDDYGKDLTSVNILLKKQQILENQVEVRQREVVELR
SQALVLSQEGNVTEEVDCQRQMVEHKFKELLDPLRKRKNFLVASREIHQFNRDVEDEILW
VKERMPIATSTEHGHNLQTVQLLIKKNQTLQKEIQGHQPRFDDIFERSESLLMEDSLAVE
AIRQHLADLQQLWGLMIEETEKRHARLEQSHNAQKYYFDAAEAEAWMSEQELYMMSEEKA
KDEQSSVAMLKKHQIVEQSVEDYAETVHQLSMTSRGLTAAGHTESERIGMRQSQVDKLYA
GMKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFR
EFSCDTGNIGQERVDAVNHLSDELINAGHADAATVAEWKDGLNEAWADLLELIDTRTQIL
AASYELHKFYHDAKEILGRILDKHKKLPEEVGRDQNTVETLQRMHTTFEHDIQALGTQVR
QLQEDAVRLQSAYAGDKADDIQRRESEVLEVWNTLLESCDVRRGHLLDTGDKFHFFSMVR
DLMLWMEDVIRLIEAQENPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKSLLARK
HYASEEIKDKLLQLMDKRKDMIDKWEDRREWLRLILEVHQFGRDAGVAEAWLLGQEPYLF
GLELGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRQQEEEERMRKTP
SPEPLPAQDSPQQSGVENGLQNGLPSDQDSPQNGVDRVEIMNGVAEQNSKDPSPIPSPTA
DRRGKGSLSSTLLTQNHDSPVAQLEGFLHRKHEWEGHNKKASSRSWHNVYCVINKQEMGF
YKDDKGAGQGIPYHNAIPISLMGAVCDVAMDYKKKKHVFKLRVADGNEYLFQAKEEEEMS
TWIQAILNAGTPDKVSITPSNQSTPASSRAQTLPATVTLTTESSPGKREKDKEKDKEKRF
SLFGKKKL
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgactacagtagccgcggaatatgaacacatggagatcacgcagcagtacagtagcagc
gacacggtcaacagccgctgggatgacgagtgggataatgagaacagctcggctcacctg
ttcgagcgctcgcgcatcaaggccctggcagatgagcgcgaagcggtgcagaagaagacc
ttcaccaaatgggtgaactctcacctctcccgggtgtcctgccgcatcacggacctgtac
agggacctgagtgatggacgcatgctcatcaaactgctggaggtgctgtctggggagaga
ctgcccaagcccaccaggggacggatgcgtatccactgcctggagaatgtggacaaggcc
ctgcagttcctcaaggagcagagggtccacctggaaaacatgggctcacatgacatcgtt
gacggcaaccatcgcctcaccctgggcctcatctggaccatcattctcaggttccagatc
caggacattagcgttgagactgatggagacaacaaggagaagagatcagccaaggatgcc
ctgctcctctggtgccagatgaagacggctggctatccaaacgtgaacattcacaacttc
agcaccagttggcgagacggcatggcattcaatgccctcatccataagcacaggccagac
ctgattgactttgacaagctgaaaaagtcaaatgcccaccacaacctgcagaatgccttc
aatttggctgagcagcatctggggcttaccaagctcctggacccagaggatatcagtgtg
gaccaccccgatgagaagtctgtcatcacatacgtggtgacatactaccactacttctcc
aaaatgaaggccctgaaagtcgaggggaaacgtattgggaaggtactggacaatgccatt
gagacagagaagatgattgagaagtacgagtctctggcctcagacctgctggagtggatc
gagcagaccatcatcatcctcaacaatcgcaagtttgccaactctttaaacggggtgcag
cagcagcttcaagccttcaacacatatcgcacggttgagaaaccccctaagtttactgag
aagggcaacctggaggtgcttctgtttaccatccagagcaagatgagggctaacaatcag
aaagtctacatgcccagggagggcaaactcatctctgacattaacaagacctgggagaga
ctggagaaggcggagcatgagcgggagctgtctctgaggacagagctgattcgacaggag
aaactggagcagctggctcgccgctttgactgcaaggctgccatgagggagacctggttg
agtgagaaccagcgcctcgtctcacaggacaactttggcttcgaccttccagcggtggac
gcggccaccaagaagcatgaggccatcgagacggatattacagcttacgaggagcgtgtg
caggccgtggtgtccgttgctaaggagctggaggcagagaaataccacgacatcaaacga
atcgcagcacgcaaggacaatgtgatccggctgtgggagtacctgctggagcttctgaag
tcgaggcgccagcgcctggagatgaacttgggtctgcagagggtcttccaggagatgctt
tacatcatggactggatggacgagatgaagatgatgctactgtcccaggactatgggaag
catctgctcggagtggaggatctcttgcagaaacatgcccttgtggaggctaacatcggc
atccaggccgaccgagtcaaagctgtcaacaacaatgctcagaagtttgccatcgatggc
gatgtttacaagccctgtgaccctcaggtaatacgcgaccgcgtggcacacacggagttt
tgctatcaggaactgatccagctggctgccgagcgacgggcccgcctggaggagtccaac
cgcctctgtaagttcttctgggagatggccgaggaggagggctggatccgtgagaaggag
cagatcctgttgtcggacgagagcggcaaggacctgacgggcactgtgcgcctgctgagc
cagcaccgcaccctggagaacgagatgagtggccgtgcaggtcacctgcagcacaccatt
actgagggccaggccatggccgacggcggccatttcggcgctgccaagatccgtgaacgc
atcaccaacctgcgggcgcagtgggcagcgttggaggagctggcggccgtgaggaaggcc
catctggaggaagcgtatgccctgcaccagttccaggtggatgcagatgacgccgacgcc
tggaccctggatgccctacgcatcgtgtccagtggcgaggtgggccatgacgagttctcc
acacaggccctggtgcgcaaacacaaggacgccgccgccgaggtggccagctatcggccg
gtgatagatgcgctccatgagcaggcgggcgccttgcctgaggcgcaggtccagtcggaa
caggtcaagggccgtttggcaggcatagaggagcgttacaaggaggtggccgagctgacc
cggtttagaaagcaggcactgcaggacgccctggccctctacaagatgttcagtgaggcg
gacgcctgcgagatgtggatcgatgagaaggagcagtggctcaacagtatggagatccca
gagaagctggaagacctagaggtcatacagcacaggttcgagagcctggagcctgagatg
aacaaccaggcatcacgcgtcgctgttgtgaaccagatcggcaggcagctgatgcacaat
ggacaccccagtgagaagaacatcaaagcccagcaagataagctcaacaacagatggagc
cagttccgggatctggcagaccagaagaaggagtctctaatctcggcgctgggtgtgcag
aactaccacctggactgcaacgaaaccaagtcatggatccgcgagaagacgaaggtcatt
gagtccacccaggagctgggcaacgacctgacaggtgtcatggcgctgcagcgtaaactc
actggcatggagcgtgacctggctgccatcgaggacaagctgggcgacctgcgcggcgag
gcagagcggctggccggcgagcacccggaccaggccaaggccatcaagggccgcctggcc
gagatcactgccgtgtgggaggagatgaagaccacactgcgtaatcgcgagttgtccctt
ggtgaggccagcaagctgcagcagttcctgcgcgagctggatgacttccagtcgtggctg
tcgcgcacacagacagccgtcgcctcggaggagacgcccaacacgctggccgaggcagag
aagctgctagcgcagcacgagggcatcaagaacgagatctgcaactacgaggaggactac
cagaagatgcgcgacatgggcgagatggtgacccagggacagaccgatgcccagtacatg
ttcctgaggcagcggctacaggccctggacacgggctggaatgagctgcacaagatgtgg
gaaaaccggcagaacctgctgtcccagtcccacgcctaccaactgtttctcagggacacc
acgcaggccgaggccttcctcaacaaccaggaatacatgctggcccatacagagatggcc
actacacttgagggggctgaaggagccatcaagcagcaggaggacttcatgaccacaatg
gacgccaacgaagagaagataaacagtgtggtggaggctggcaggcggctggcgactgat
ggcaacgccgaccgcatccaggagagagcgacgtctattgacgacagacataagaagaac
cgcaaggctgctctggagctactgatgaggctgaaggataaccgggaccttcagaagttc
ctacaggattcccaggagctgtccctgtggatcaatgagaagatgctcacggcccaggac
atgtcgtacgacgaggccaggaacctccacagcaaatggctcaagcatcaggccttcatg
gccgagctgcagtccaacaaggagtggctggacaaaattgagaaggatgggatgcagctg
gtgttagagaagcctgagacagagtcggtggtcaaggagaagctctcagccctccagaag
atgtgggaagtgttggagtctaccacccagaccaaagcccagtgcctgtttgatgccaac
aagaccgagctgttcacacagagctgtgctgacttggacaagtggctgggtggcctggag
ggacagattcaatctgatgactatggcaaagacctgaccagcgtcaatatcctgctcaaa
aagcagcagatattggagaaccaggtggaggtccgtcagagggaggtggtggagctgcgg
agccaggcactggtcctcagccaggaagggaatgtcacagaggaggtggattgccagaga
cagatggtggagcacaagttcaaagagctgctcgacccactgaggaagagaaagaacttc
ctggtggcctcccgtgagatccaccagttcaaccgtgacgtggaggatgagatactttgg
gtcaaagagaggatgccaattgcaacctccacagagcatggtcacaacctacagaccgtt
caactgcttatcaagaaaaatcagaccttgcagaaggagatccagggtcaccagccccgc
ttcgacgacattttcgagcggagcgagagcctgctgatggaggacagccttgccgtggag
gccatccgccagcacctggccgacctgcaacagctgtggggtctgatgattgaggagaca
gagaagcgtcacgcccgactggagcagtcccacaacgcccagaagtactactttgatgct
gccgaggcagaggcctggatgagcgagcaggagttgtacatgatgtctgaggagaaagcc
aaggatgagcagagctctgtagccatgctgaagaagcaccagattgtggaacaatcggtg
gaggactatgctgagacagtccatcagctctccatgaccagcagaggcctgacagctgca
ggacatacagagagtgagaggataggcatgcgtcagtctcaggtggacaagctctatgcc
ggcatgaaggacctgtctgaggagaggcggggcaaactggatgagaggttccgcctgttc
cagctcaaccgcgaggttgacgacttggagcagtggattgccgagcgggaggtggtggcc
ggatctcacgagctgggacaggactacgagcatgtcactatgctccaggagcgcttccgg
gagttttcctgtgacacaggcaacatcggccaggagcgtgtggatgccgtcaaccacctg
tccgacgagctgattaatgcgggccacgcagatgccgccacggtggctgagtggaaggac
ggcctcaacgaggcctgggctgacctgctggagctcatcgacacgcgcacgcagatcctg
gccgcctcttacgagctacacaagttctaccacgacgccaaggagatcctgggccgcatc
ctggacaaacacaagaagcttcccgaggaggtgggacgtgaccagaacacggtggagaca
ctgcagcggatgcacaccaccttcgagcacgacatccaggccctgggaacacaggtgagg
cagctgcaggaggatgccgtccgcctccagtcagcctacgccggcgacaaggcagacgac
atccagcggagggagagcgaggtgctggaggtctggaataccctgctggagtcctgcgat
gtccgcagaggccacctcctggacaccggtgacaaatttcacttcttcagcatggtgcgc
gatctcatgctgtggatggaggacgtcatccgtctcatcgaagcccaggagaatccaagg
gacgtgtcctctgtggagttgttgatgaacaaccaccagggtatcaaggctgagatcgac
gcccgcaatgacagcttcaccgcttgcattgagttgggcaagtctctgctagccagaaag
cactatgcatcagaggagatcaaagataaattactacagctgatggacaagaggaaagac
atgattgacaagtgggaggaccgacgggagtggttaagactgattttggaagttcaccag
tttgggagggatgcaggggtggcagaggcgtggctgctgggacaggaaccatacctgttt
ggcctggagttggggcagagcgtggacgaagtggagaaactgatcaagaggcacgaggct
tttgagaagtcggccgctacttgggaggagcgcttctcagcactggagaggttgactacg
ttggagttattggaagtgagaagacagcaagaggaagaagagagaatgcgaaaaacccct
tcgccggagcctttaccggcgcaggactcaccacagcagagtggagtagagaatggactg
cagaacggactgccctcagaccaggattctccacagaacggtgtggacagagttgagatc
atgaatggagtggcggagcagaactcaaaggacccgagccccattccctcacccacagcc
gaccggcggggcaagggcagcctgtcctccacgttgctgacccagaaccacgattcgcct
gtggctcagctggagggcttcctgcatcgcaagcatgaatgggagggacacaacaagaag
gcctcaagcagatcatggcataacgtgtactgcgttatcaacaagcaggaaatgggcttc
tacaaagacgacaagggtgctggtcaaggcatcccctaccataatgcgattccgatcagt
ctaatgggggctgtgtgtgatgtggccatggactacaaaaaaaagaagcatgtcttcaaa
ctcagagttgctgatggaaatgagtatctcttccaagccaaagaagaggaagagatgagc
acatggatccaggccattctgaacgcggggacacctgataaggtatcgattacgcccagc
aaccagagcactccggcatcgagccgagcccagaccctgcccgccactgtcaccctcacc
accgaatccagcccgggcaagcgggagaaagacaaagaaaaggacaaggagaagcgattc
agcctctttggcaagaaaaagctataa
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integrated database retrieval system
