Oncorhynchus tshawytscha (Chinook salmon): 112247802
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Entry
112247802 CDS
T05605
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112247802
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112247802
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112247802
Intermediate filaments
Intermediate filament-binding proteins
112247802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
112247802
NCBI-ProteinID:
XP_024272396
LinkDB
All DBs
Position
LG32:35502..147681
Genome browser
AA seq
2348 aa
AA seq
DB search
MTTVAAEYEHMEITQQYSSSDTVNSRWDDEWDNENSSAHLFERSRIKALADEREAVQKKT
FTKWVNSHLSRVSCRITDLYRDLSDGRMLIKLLEVLSGERLPKPTRGRMRIHCLENVDKA
LQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETDGDNKEKRSAKDA
LLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHHNLQNAF
NLAEQHLGLTKLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAI
ETEKMIEKYESLASDLLEWIEQTIIILNNRKFANSLNGVQQQLQAFNTYRTVEKPPKFTE
KGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKTWERLEKAEHERELSLRTELIRQE
KLEQLARRFDCKAAMRETWLSENQRLVSQDNFGFDLPAVDAATKKHEAIETDITAYEERV
QAVVSVAKELEAEKYHDIKRIAARKDNVIRLWEYLLELLKSRRQRLEMNLGLQRVFQEML
YIMDWMDEMKMMLLSQDYGKHLLGVEDLLQKHALVEANIGIQADRVKAVNNNAQKFAIDG
DVYKPCDPQVIRDRVAHTEFCYQELIQLAAERRARLEESNRLCKFFWEMAEEEGWIREKE
QILLSDESGKDLTGTVRLLSQHRTLENEMSGRAGHLQHTITEGQAMADGGHFGAAKIRER
ITNLRAQWAALEELAAVRKAHLEEAYALHQFQVDADDADAWTLDALRIVSSGEVGHDEFS
TQALVRKHKDAAAEVASYRPVIDALHEQAGALPEAQVQSEQVKGRLAGIEERYKEVAELT
RFRKQALQDALALYKMFSEADACEMWIDEKEQWLNSMEIPEKLEDLEVIQHRFESLEPEM
NNQASRVAVVNQIGRQLMHNGHPSEKNIKAQQDKLNNRWSQFRDLADQKKESLISALGVQ
NYHLDCNETKSWIREKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEDKLGDLRGE
AERLAGEHPDQAKAIKGRLAEITAVWEEMKTTLRNRELSLGEASKLQQFLRELDDFQSWL
SRTQTAVASEETPNTLAEAEKLLAQHEGIKNEICNYEEDYQKMRDMGEMVTQGQTDAQYM
FLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTTQAEAFLNNQEYMLAHTEMA
TTLEGAEGAIKQQEDFMTTMDANEEKINSVVEAGRRLATDGNADRIQERATSIDDRHKKN
RKAALELLMRLKDNRDLQKFLQDSQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQAFM
AELQSNKEWLDKIEKDGMQLVLEKPETESVVKEKLSALQKMWEVLESTTQTKAQCLFDAN
KTELFTQSCADLDKWLGGLEGQIQSDDYGKDLTSVNILLKKQQILENQVEVRQREVVELR
SQALVLSQEGNVTEEVDCQRQMVEHKFKELLDPLRKRKNFLVASREIHQFNRDVEDEILW
VKERMPIATSTEHGHNLQTVQLLIKKNQTLQKEIQGHQPRFDDIFERSESLLMEDSLAVE
AIRQHLADLQQLWGLMIEETEKRHARLEQSHNAQKYYFDAAEAEAWMSEQELYMMSEEKA
KDEQSSVAMLKKHQIVEQSVEDYAETVHQLSMTSRGLTAAGHTESERIGMRQSQVDKLYA
GMKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFR
EFSCDTGNIGQERVDAVNHLSDELINAGHADAATVAEWKDGLNEAWADLLELIDTRTQIL
AASYELHKFYHDAKEILGRILDKHKKLPEEVGRDQNTVETLQRMHTTFEHDIQALGTQVR
QLQEDAVRLQSAYAGDKADDIQRRESEVLEVWNTLLESCDVRRGHLLDTGDKFHFFSMVR
DLMLWMEDVIRLIEAQENPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKSLLARK
HYASEEIKDKLLQLMDKRKDMIDKWEDRREWLRLILEVHQFGRDAGVAEAWLLGQEPYLF
GLELGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRQQEEEERMRKTP
SPEPLPAQDSPQQSGVENGLQNGLPSDQDSPQNGVDRVEIMNGVAEQNSKDPSPIPSPTA
DRRGKGSLSSTLLTQNHDSPVAQLEGFLHRKHEWEGHNKKASSRSWHNVYCVINKQEMGF
YKDDKGAGQGIPYHNAIPISLMGAVCDVAMDYKKKKHVFKLRVADGNEYLFQAKEEEEMS
TWIQAILNAGTPDKVSITPSNQSTPASSRAQTLPATVTLTTESSPGKREKDKEKDKEKRF
SLFGKKKL
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgactacagtagccgcggaatatgaacacatggagatcacgcagcagtacagtagcagc
gacacggtcaacagccgctgggatgacgagtgggataatgagaacagctcggctcacctg
ttcgagcgctcgcgcatcaaggccctggcagatgagcgcgaagcggtgcagaagaagacc
ttcaccaaatgggtgaactctcacctctcccgggtgtcctgccgcatcacggacctgtac
agggacctgagtgatggacgcatgctcatcaaactgctggaggtgctgtctggggagaga
ctgcccaagcccaccaggggacggatgcgtatccactgcctggagaatgtggacaaggcc
ctgcagttcctcaaggagcagagggtccacctggaaaacatgggctcacatgacatcgtt
gacggcaaccatcgcctcaccctgggcctcatctggaccatcattctcaggttccagatc
caggacattagcgttgagactgatggagacaacaaggagaagagatcagccaaggatgcc
ctgctcctctggtgccagatgaagacggctggctatccaaacgtgaacattcacaacttc
agcaccagttggcgagacggcatggcattcaatgccctcatccataagcacaggccagac
ctgattgactttgacaagctgaaaaagtcaaatgcccaccacaacctgcagaatgccttc
aatttggctgagcagcatctggggcttaccaagctcctggacccagaggatatcagtgtg
gaccaccccgatgagaagtctgtcatcacatacgtggtgacatactaccactacttctcc
aaaatgaaggccctgaaagtcgaggggaaacgtattgggaaggtactggacaatgccatt
gagacagagaagatgattgagaagtacgagtctctggcctcagacctgctggagtggatc
gagcagaccatcatcatcctcaacaatcgcaagtttgccaactctttaaacggggtgcag
cagcagcttcaagccttcaacacatatcgcacggttgagaaaccccctaagtttactgag
aagggcaacctggaggtgcttctgtttaccatccagagcaagatgagggctaacaatcag
aaagtctacatgcccagggagggcaaactcatctctgacattaacaagacctgggagaga
ctggagaaggcggagcatgagcgggagctgtctctgaggacagagctgattcgacaggag
aaactggagcagctggctcgccgctttgactgcaaggctgccatgagggagacctggttg
agtgagaaccagcgcctcgtctcacaggacaactttggcttcgaccttccagcggtggac
gcggccaccaagaagcatgaggccatcgagacggatattacagcttacgaggagcgtgtg
caggccgtggtgtccgttgctaaggagctggaggcagagaaataccacgacatcaaacga
atcgcagcacgcaaggacaatgtgatccggctgtgggagtacctgctggagcttctgaag
tcgaggcgccagcgcctggagatgaacttgggtctgcagagggtcttccaggagatgctt
tacatcatggactggatggacgagatgaagatgatgctactgtcccaggactatgggaag
catctgctcggagtggaggatctcttgcagaaacatgcccttgtggaggctaacatcggc
atccaggccgaccgagtcaaagctgtcaacaacaatgctcagaagtttgccatcgatggc
gatgtttacaagccctgtgaccctcaggtaatacgcgaccgcgtggcacacacggagttt
tgctatcaggaactgatccagctggctgccgagcgacgggcccgcctggaggagtccaac
cgcctctgtaagttcttctgggagatggccgaggaggagggctggatccgtgagaaggag
cagatcctgttgtcggacgagagcggcaaggacctgacgggcactgtgcgcctgctgagc
cagcaccgcaccctggagaacgagatgagtggccgtgcaggtcacctgcagcacaccatt
actgagggccaggccatggccgacggcggccatttcggcgctgccaagatccgtgaacgc
atcaccaacctgcgggcgcagtgggcagcgttggaggagctggcggccgtgaggaaggcc
catctggaggaagcgtatgccctgcaccagttccaggtggatgcagatgacgccgacgcc
tggaccctggatgccctacgcatcgtgtccagtggcgaggtgggccatgacgagttctcc
acacaggccctggtgcgcaaacacaaggacgccgccgccgaggtggccagctatcggccg
gtgatagatgcgctccatgagcaggcgggcgccttgcctgaggcgcaggtccagtcggaa
caggtcaagggccgtttggcaggcatagaggagcgttacaaggaggtggccgagctgacc
cggtttagaaagcaggcactgcaggacgccctggccctctacaagatgttcagtgaggcg
gacgcctgcgagatgtggatcgatgagaaggagcagtggctcaacagtatggagatccca
gagaagctggaagacctagaggtcatacagcacaggttcgagagcctggagcctgagatg
aacaaccaggcatcacgcgtcgctgttgtgaaccagatcggcaggcagctgatgcacaat
ggacaccccagtgagaagaacatcaaagcccagcaagataagctcaacaacagatggagc
cagttccgggatctggcagaccagaagaaggagtctctaatctcggcgctgggtgtgcag
aactaccacctggactgcaacgaaaccaagtcatggatccgcgagaagacgaaggtcatt
gagtccacccaggagctgggcaacgacctgacaggtgtcatggcgctgcagcgtaaactc
actggcatggagcgtgacctggctgccatcgaggacaagctgggcgacctgcgcggcgag
gcagagcggctggccggcgagcacccggaccaggccaaggccatcaagggccgcctggcc
gagatcactgccgtgtgggaggagatgaagaccacactgcgtaatcgcgagttgtccctt
ggtgaggccagcaagctgcagcagttcctgcgcgagctggatgacttccagtcgtggctg
tcgcgcacacagacagccgtcgcctcggaggagacgcccaacacgctggccgaggcagag
aagctgctagcgcagcacgagggcatcaagaacgagatctgcaactacgaggaggactac
cagaagatgcgcgacatgggcgagatggtgacccagggacagaccgatgcccagtacatg
ttcctgaggcagcggctacaggccctggacacgggctggaatgagctgcacaagatgtgg
gaaaaccggcagaacctgctgtcccagtcccacgcctaccaactgtttctcagggacacc
acgcaggccgaggccttcctcaacaaccaggaatacatgctggcccatacagagatggcc
actacacttgagggggctgaaggagccatcaagcagcaggaggacttcatgaccacaatg
gacgccaacgaagagaagataaacagtgtggtggaggctggcaggcggctggcgactgat
ggcaacgccgaccgcatccaggagagagcgacgtctattgacgacagacataagaagaac
cgcaaggctgctctggagctactgatgaggctgaaggataaccgggaccttcagaagttc
ctacaggattcccaggagctgtccctgtggatcaatgagaagatgctcacggcccaggac
atgtcgtacgacgaggccaggaacctccacagcaaatggctcaagcatcaggccttcatg
gccgagctgcagtccaacaaggagtggctggacaaaattgagaaggatgggatgcagctg
gtgttagagaagcctgagacagagtcggtggtcaaggagaagctctcagccctccagaag
atgtgggaagtgttggagtctaccacccagaccaaagcccagtgcctgtttgatgccaac
aagaccgagctgttcacacagagctgtgctgacttggacaagtggctgggtggcctggag
ggacagattcaatctgatgactatggcaaagacctgaccagcgtcaatatcctgctcaaa
aagcagcagatattggagaaccaggtggaggtccgtcagagggaggtggtggagctgcgg
agccaggcactggtcctcagccaggaagggaatgtcacagaggaggtggattgccagaga
cagatggtggagcacaagttcaaagagctgctcgacccactgaggaagagaaagaacttc
ctggtggcctcccgtgagatccaccagttcaaccgtgacgtggaggatgagatactttgg
gtcaaagagaggatgccaattgcaacctccacagagcatggtcacaacctacagaccgtt
caactgcttatcaagaaaaatcagaccttgcagaaggagatccagggtcaccagccccgc
ttcgacgacattttcgagcggagcgagagcctgctgatggaggacagccttgccgtggag
gccatccgccagcacctggccgacctgcaacagctgtggggtctgatgattgaggagaca
gagaagcgtcacgcccgactggagcagtcccacaacgcccagaagtactactttgatgct
gccgaggcagaggcctggatgagcgagcaggagttgtacatgatgtctgaggagaaagcc
aaggatgagcagagctctgtagccatgctgaagaagcaccagattgtggaacaatcggtg
gaggactatgctgagacagtccatcagctctccatgaccagcagaggcctgacagctgca
ggacatacagagagtgagaggataggcatgcgtcagtctcaggtggacaagctctatgcc
ggcatgaaggacctgtctgaggagaggcggggcaaactggatgagaggttccgcctgttc
cagctcaaccgcgaggttgacgacttggagcagtggattgccgagcgggaggtggtggcc
ggatctcacgagctgggacaggactacgagcatgtcactatgctccaggagcgcttccgg
gagttttcctgtgacacaggcaacatcggccaggagcgtgtggatgccgtcaaccacctg
tccgacgagctgattaatgcgggccacgcagatgccgccacggtggctgagtggaaggac
ggcctcaacgaggcctgggctgacctgctggagctcatcgacacgcgcacgcagatcctg
gccgcctcttacgagctacacaagttctaccacgacgccaaggagatcctgggccgcatc
ctggacaaacacaagaagcttcccgaggaggtgggacgtgaccagaacacggtggagaca
ctgcagcggatgcacaccaccttcgagcacgacatccaggccctgggaacacaggtgagg
cagctgcaggaggatgccgtccgcctccagtcagcctacgccggcgacaaggcagacgac
atccagcggagggagagcgaggtgctggaggtctggaataccctgctggagtcctgcgat
gtccgcagaggccacctcctggacaccggtgacaaatttcacttcttcagcatggtgcgc
gatctcatgctgtggatggaggacgtcatccgtctcatcgaagcccaggagaatccaagg
gacgtgtcctctgtggagttgttgatgaacaaccaccagggtatcaaggctgagatcgac
gcccgcaatgacagcttcaccgcttgcattgagttgggcaagtctctgctagccagaaag
cactatgcatcagaggagatcaaagataaattactacagctgatggacaagaggaaagac
atgattgacaagtgggaggaccgacgggagtggttaagactgattttggaagttcaccag
tttgggagggatgcaggggtggcagaggcgtggctgctgggacaggaaccatacctgttt
ggcctggagttggggcagagcgtggacgaagtggagaaactgatcaagaggcacgaggct
tttgagaagtcggccgctacttgggaggagcgcttctcagcactggagaggttgactacg
ttggagttattggaagtgagaagacagcaagaggaagaagagagaatgcgaaaaacccct
tcgccggagcctttaccggcgcaggactcaccacagcagagtggagtagagaatggactg
cagaacggactgccctcagaccaggattctccacagaacggtgtggacagagttgagatc
atgaatggagtggcggagcagaactcaaaggacccgagccccattccctcacccacagcc
gaccggcggggcaagggcagcctgtcctccacgttgctgacccagaaccacgattcgcct
gtggctcagctggagggcttcctgcatcgcaagcatgaatgggagggacacaacaagaag
gcctcaagcagatcatggcataacgtgtactgcgttatcaacaagcaggaaatgggcttc
tacaaagacgacaagggtgctggtcaaggcatcccctaccataatgcgattccgatcagt
ctaatgggggctgtgtgtgatgtggccatggactacaaaaaaaagaagcatgtcttcaaa
ctcagagttgctgatggaaatgagtatctcttccaagccaaagaagaggaagagatgagc
acatggatccaggccattctgaacgcggggacacctgataaggtatcgattacgcccagc
aaccagagcactccggcatcgagccgagcccagaccctgcccgccactgtcaccctcacc
accgaatccagcccgggcaagcgggagaaagacaaagaaaaggacaaggagaagcgattc
agcctctttggcaagaaaaagctataa
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integrated database retrieval system
