Oncorhynchus tshawytscha (Chinook salmon): 112247899
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Entry
112247899 CDS
T05605
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112247899 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112247899 (ndc1)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112247899 (ndc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
112247899
NCBI-ProteinID:
XP_042185177
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All DBs
Position
LG10:complement(83300838..83344838)
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AA seq
679 aa
AA seq
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MFSSDQSCCWFVRKVICWRAVASMAWSVLLLLPTTALFVLLIRFSLFHPILWISECLSLL
TSASAIFSFILLCGVVLMVGFFNLEYYTVVPSIACSKIALLGQVLHPRQFVHSLVHCIMG
VVVAWCCAFTIGGRYRSLGHSCTQDESSSGPEMCLNEYHLVLLLVGAFIGYSHSLVGVVY
NMNYVSFHTMQQYKYLRFKGALPLVVKASAVQALYCLRTFLLLYFFMGYAPRAWICKTLD
LNINSSIHSLDSVSSLLDLSLLYHLWISGTFLLLTWYITVLLFRIFVTEVYSFPVQSTFT
EDAHQCLPKVITGTQPMILKFLALQDLALLSQHSPSRRLEVFSLSQPGGHPHIWTALSKE
CLSLLSDLTERLVAHHDTVATNGRAKSQSTGGNKRSTTSSEGSVTSVGMEDMKTPRPGAL
IRTPGSVFLRSSVGAGLRTPLTIPFTPDLDSPFSSPALRRLTGPLEPQGALSPGFSSIQS
PHVMRRGPKLWSASTDSQLNGSPPPSPGPAPSPSQAQLKPSFLVTFLQNRKDQVKHFLAK
RMLIMYLFNKLPEASSQALFADSQVHIWALQGLSHLVAASFSEDQYGIVQTTLPTILSTL
LLLQEAVDRHFKLPHTSSKPGHCSCSMGDDSYKTLRFALRSTLKTSVYRITATFGGHLHA
VQMSAEHRKRLQHFLEYKE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgttttcatcggatcaaagttgttgttggttcgttcgtaaggtgatttgttggagagca
gtagccagtatggcgtggtctgtcctgctgctgctgcccaccacagctctgtttgtactt
ctcatcagattcagtctgtttcacccgatactctggatatcagaatgcctgtccctattg
accagtgccagtgccatcttctccttcattctgctatgtggagtggtattgatggtgggc
ttcttcaacctggagtattacacagtcgtcccatccatcgcctgttccaagatcgccctc
ctgggtcaggtgctccacccccgtcagttcgtccactcactggtgcactgcatcatgggt
gttgtagtagcttggtgttgtgccttcaccatcggagggcgctacaggtccttggggcac
tcctgtacacaggatgagagtagtagtggtcctgagatgtgcctgaatgaataccacctg
gtgctgcttctcgttggggccttcattggctacagccacagcctggtgggagtggtctac
aacatgaactacgtttctttccacaccatgcagcaatacaagtacctccgcttcaaggga
gctctgcccctagtggtgaaggccagtgctgttcaggctctctactgtctcaggaccttc
ctcctgctgtatttcttcatgggatatgcaccacgagcctggatctgtaaaacacttgac
ctcaacatcaacagttcaatccattccctggacagtgtgtctagtctattggacctgtcc
ctcctgtaccacctgtggatcagtgggaccttcctcctcctcacctggtacatcacagtg
ctgctcttcaggatctttgttaccgaggtttacagtttccctgtccagtccacgttcaca
gaggacgcccaccagtgcctgcccaaagttatcactggcacgcaaccaatgatactgaag
ttcctagccctccaggacctggctctgctgtctcaacattctccttctagacgtctggag
gtgttcagtctcagccaaccaggcggtcaccctcacatctggacggccctgagtaaggag
tgtctgtctctgttgtctgacctgactgagcggctggtagcccaccatgacactgtagct
actaacggacgggccaagtcccagtctacagggggcaacaagcggtccaccacctcctcg
gaaggctccgtaacttctgtcggtatggaggatatgaagactcctcggcccggcgccctg
atcagaacacctggctcagtgttcttgcgttcctctgtcggggcgggcctgcgaactccc
ctgaccatcccctttaccccggacctagacagccccttctcctcccccgccctgcggcgg
ctcactggccccctggagcctcagggggccctgtcccccggcttcagctccatccagagc
cctcacgtcatgaggaggggccccaaactctggtctgcttctacagactcccagctgaac
ggcagtcctccgccatctcctggtcccgcccccagcccgtcccaggcccaactcaaaccc
tccttccttgttaccttcctacagaacaggaaggaccaggttaaacatttcttggcaaag
cggatgctgataatgtatctgtttaacaagctgccagaagcctccagtcaggccctgttt
gctgacagccaggttcacatatgggctctgcaaggtctgtctcacctggtggcagcgtcc
ttctctgaggaccagtatggaatagttcagaccaccctgcctaccatcctcagtacccta
ctgctgttacaggaggctgtggatcgtcacttcaagctcccccatacctcctctaaacca
ggtcactgttcctgcagtatgggagatgacagttacaagacgctccgctttgccctgcga
tccaccctgaagacttctgtctacaggatcacagccaccttcggaggacacctccacgct
gtccagatgtctgccgagcaccggaagagactgcagcacttcctggagtataaagagtga
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