Oncorhynchus tshawytscha (Chinook salmon): 112247950
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Entry
112247950 CDS
T05605
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp3-like
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112247950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112247950
Spliceosome [BR:
otw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
112247950
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
PWI
TPX2
DUF4011
Motif
Other DBs
NCBI-GeneID:
112247950
NCBI-ProteinID:
XP_042163844
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All DBs
Position
LG03:complement(4297035..4308957)
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AA seq
711 aa
AA seq
DB search
MSLPKREVEELRPWVERTVKKVLGFSEPTVVTAALHCVGKGLDKRKTTDQLRPFLDESAG
GFVERLFEALEESRNSRGNKGAGERNRKRDLKDVFGDEVEVGARRDVPEAGDGVPVKRKR
VPRFEEVEEPEVLPAPPTESPVMLTKIQIKQMMEAATRQIEERKKQLSFVPVSSQQRLPL
PIPQPDPPFASHLLPAPSAPSLGSAQSIAPSQAATFMNDAIEKARKAAELQARIQSQLAM
KPGILGAIGNTGGPHNLVALANLHAMGIAPPKVAEARESNKPAPLILDDMGRTVDASGNE
VELTHRMPTLKANIRAVKREQFRQQLKEKPGEDLESTIYFDGRVNIAPAQRAKKGFKFHE
QGRFEKIAQRIRTKAQLEKLQTEIAQAAKKTGIQASTKLALFAPKKMLGDGQVPIIEWWD
SYILPSNIDLSTETNFVAMELFGVTNLVEHPAQISPPVDTDKPGVTLGVYLTKKEQKKLR
RQTRREGQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQK
AHEEANAARKLTTEQRKEKKVKKLKEDLSLGVHISVYRIRNLHNPAKKFKVEANANQLYL
TGTVVLHRDVNMVVVEGGPKAQKKFKRLMLSRIKWEEHNSKRDDPDADDETKKNNRCSLV
WEGTAKERNYGEMKFKQCPTENMAREHFKKHGTEHYWDLALSQSVLESTDD
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttcctaaacgggaggtggaggagctacggccctgggtggaacggaccgtgaag
aaggtgctggggttctctgagcctactgtcgttactgcggccctgcattgtgtaggcaag
ggcctggacaagaggaagaccacagaccagctgcgtccattcctggatgagtctgccggt
gggttcgtggagagactatttgaggccctggaggagagccgcaattcccgtgggaacaag
ggtgctggggagaggaaccgcaagagagacctgaaggatgtgtttggtgatgaggttgag
gtgggtgcgaggcgggacgtccctgaggcaggagatggtgtgccggtgaagaggaaacgt
gtcccccgcttcgaggaggtggaggaaccagaggtcctacctgcaccccctactgagagc
cctgtcatgctcactaaaatacagatcaaacagatgatggaagctgccaccagacagata
gaggagaggaagaaacagctgagcttcgtcccagtgtcttcccagcagaggctgcccctg
cccattccccagccagacccccccttcgcctctcatcttctccccgctccctctgccccc
tccttgggctcggcccagtccatcgctccctcccaggcagctactttcatgaacgatgcc
atcgagaaggctaggaaggctgcagagctgcaggcccgcatccagtcgcagttagccatg
aagcctggtatactgggagccattgggaacactggaggacctcataacctggtggcactg
gccaacctacacgccatggggatagcaccaccgaaggtggcggaggcccgtgagtcaaac
aagccggcccctctgattctggatgatatgggtcggaccgtggacgccagcggcaacgag
gtggagctaactcaccgcatgcccaccctcaaagctaatatccgtgcggtgaagagggag
cagttccgtcagcagttgaaggagaagcctggtgaggacctggagtccactatctacttt
gacgggcgggttaacatagcacccgcccagcgagccaagaagggcttcaagttccatgag
cagggacgctttgagaagatcgcccagaggatcagaactaaggcccagttggagaagctg
cagacagagatcgcccaggcagccaagaagactgggatccaggcctccaccaagctggcc
ctctttgcccccaagaagatgctgggggacgggcaggtgcccatcattgagtggtgggac
tcgtacatcctcccctccaacattgacctatccacagagaccaattttgtggcgatggag
ttgtttggagtcacaaacctggtggagcaccctgctcagatcagccccccggtggataca
gacaagccaggagtgactctgggagtgtacctgactaagaaggaacagaagaagctgagg
agacagactcgcagggagggacagaaagagcttcaggagaaggtccgactggggctcatg
ccccccccagaacctaaagtgcgcatctctaacctgatgagagtgctgggtacggaggca
gtacaggatcccactaaggtagaggcccacgtcagagcacagatggccaagagacagaag
gcccatgaggaggccaatgcagcccggaaactcacaaccgagcagagaaaagagaagaag
gtgaagaagctgaaagaggacctgagtcttggagttcacatctccgtctataggatccgt
aacctccacaacccagctaagaagtttaaggtggaagctaacgccaaccagctgtacctg
acgggcaccgtggtgctacaccgagacgtcaacatggtggtggtggagggaggtcccaaa
gcccagaagaagttcaagaggctcatgttgagcagaatcaaatgggaagaacacaactcc
aagagagatgatccagatgcagacgatgagaccaagaagaacaacagatgcagcctggtc
tgggagggcacagctaaggagcgtaactatggggagatgaagtttaagcagtgtcctaca
gagaacatggctagagaacactttaagaagcacggaacagaacactactgggacctggct
ctgagccagagcgtgctggagagcactgatgactga
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