Oncorhynchus tshawytscha (Chinook salmon): 112248164
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Entry
112248164 CDS
T05605
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD isoform X1
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04217
Necroptosis
otw04622
RIG-I-like receptor signaling pathway
otw04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
112248164
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
112248164
04625 C-type lectin receptor signaling pathway
112248164
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112248164
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112248164
Enzymes [BR:
otw01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
112248164
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C67
112248164
Ubiquitin system [BR:
otw04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
112248164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CYLD_phos_site
CAP_GLY
UCH
Motif
Other DBs
NCBI-GeneID:
112248164
NCBI-ProteinID:
XP_042177134
LinkDB
All DBs
Position
LG04:72573118..72633068
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AA seq
962 aa
AA seq
DB search
MSSALWSQEKPSGGFREDWRFYMVVKECTVEKPPQKTLRIPRGSLGQACQERNSLGRTLP
PSKGKRSLRILDQTNVVLSLDERDVLELDEKLAELLFPITNCEERYALLCNKPRLERARD
IDCGSKVRVQLRSGDEPLPGVVRFKGSLLPDRALSGVWFGVELLEEGRGQGFTEGSYQGR
QLFRCEDECGVFVALDKLELWDDEEEELGELEVDHVILVEEEMDFHPLEINSRVLVQTRE
GPERGTIIFCDLLPGNESLGYYVGVDMDNPIGDWDGVIDGKLLCNFASLEHTRLVPICDV
MPEYSMQDQRLQKHSFTPRGSSSDKSSSGQSKPKSKGLGLQCGSRSKSELYYTLNGSSVD
HPVQAKSKSTWYIDEVGEDPAKSLTDTPPDFNETTPPTRAPPSASLSIDNKFHSLPFSLS
RKTGPNGSLSHGPLSLSVQSVMGEQMQMPEPPSPSPPSPRPPSPLSSRGGGGVPGLEVGS
LVEVKENPPLCGVIRWVGLPPGLPEPLAGLELEEECVGCTDGTFQGTRYFSCAPKKALFV
KLKCCRPDSRFPSLHHSSNPIERCNSIAFGGYLSEVVHENTPPRTENDGLDIMVGKKKGI
QGHYNSCYLDSTLFCLFSFSSVLDTVLLRPRSKTDVEYYRETQELLRTEIVNPLRIHGYV
CATKVMKLRRILEKVEAASGFTSEEKDPEEFLNILFHHILRVDPLLKLRSAGQKVQDCYF
YQIFMDKKDKVGVPTSQQLIEWSFINSDLKFAEAPSCLIIQMPRFGKDFKMFNKIFPSLE
LDITDLLEDTPRECRICGGLALYECRECYEDGDITAGKIKQFCEKCNTQVHLHPRRKAHR
HGKLSVPKELQEGVWRQGSFPRQRMELFAVLCIETSHYVAFVKYGHQDSAWLFFDSMADR
DGGQNGFNIPQVSPCPEVGAYLKMTPEELHALDPKSIQGQARRLLCDAYMCMYQSPTMSL
YK
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgagctctgccctgtggagccaggagaagcccagtgggggcttcagggaggactggcgc
ttctacatggtggtcaaggagtgtacagtggagaagcccccccagaagaccttgaggatc
ccccggggcagcctgggacaggcctgccaggagaggaacagcctggggcgcacgctgccc
cccagcaaaggcaagaggagcctacgcatcctggaccagaccaatgtggtgctgagcctg
gatgagcgggacgtcctggagctggatgagaagctagctgagctgctgttccccatcacc
aactgtgaggagcgctatgccctgctgtgcaacaagcccaggctggagcgggccagagac
atcgactgtggctccaaggtgcgcgtgcagctgcgttcgggtgatgaacctttgcccggg
gtagtccgatttaaaggatctctcctcccagacagggctctctccggggtctggtttgga
gtggagctgctggaggagggcagaggccagggcttcacagagggctcctaccagggccga
cagctgttccgctgtgaagatgagtgcggggtgtttgtggccctggacaagctggagctg
tgggatgatgaggaagaggagctgggagagctagaggtggatcacgtcatcctggtggaa
gaggagatggatttccatccgctggagatcaactccagggtcctggtccagaccagagag
gggccagagaggggaaccatcatcttctgtgacctgctgcctgggaacgagagcctgggg
tactatgtgggagtagacatggacaatcctattggggactgggatggtgttatcgatggg
aagctgctgtgtaatttcgccagtctggaacacacccgtctagtccccatctgtgacgta
atgccagaatactccatgcaggaccagaggctgcagaagcacagttttacccccagaggc
agcagcagtgacaagtcctcctctggccaaagcaaaccaaagagcaaaggcttaggtctt
cagtgtgggagtagaagcaagtcagaattgtattatactttaaatggcagctctgttgac
cacccggtccaggccaaatccaaaagcacatggtacattgatgaagtaggggaagaccct
gccaagtccctcacagacacgccccctgacttcaatgaaaccacacctcctaccagggcc
ccgccctctgcttccttgtccattgacaacaagttccactccctgcccttcagcctgagc
cgtaagacggggcccaatggcagcctgagccatggacccctctccctctccgtgcagtca
gtgatgggagagcagatgcagatgccagagcccccatcgcccagccctccctccccgagg
cccccctcacccctcagctctcgcgggggtgggggagtgcctggtctggaggtggggtcc
ctagtggaggtgaaggagaacccgcccctgtgtggggtcatccgctgggtggggctgccc
ccgggactaccagagccactggctggcctggagctggaggaagagtgtgttggctgtaca
gacggcacctttcaaggtacccgctacttcagctgcgcgcccaagaaggccctgtttgtg
aagctgaaatgctgccggcctgactcccgtttcccctccctacaccactcctccaacccc
atagagagatgcaactctatcgctttcgggggttatctgagtgaggtggtgcatgagaac
actcctccacgcactgagaatgacggtctagacatcatggtgggcaagaagaaaggtatc
cagggacactacaactcctgctacctggactccacactcttctgcctgttttccttcagc
tcagtcctggacacagttctgctgaggccgaggtccaagactgacgtagagtattaccga
gagacacaggagctgctacgcacagagatagtaaaccccctgcgcatacatggctatgtg
tgtgccactaaagtgatgaagctcagaaggatactggagaaggtagaagctgcctcaggg
ttcacgtctgaagaaaaagatcctgaggagttcctcaatattctgttccatcacatattg
agggtggaccccttactcaagctgaggtcggcaggtcagaaggttcaggactgctacttc
taccagatcttcatggataagaaggacaaagtgggcgtgccaaccagccagcagctcata
gagtggtccttcatcaacagtgacctcaagtttgctgaggctccttcctgccttatcatc
caaatgcctcgctttgggaaggacttcaagatgttcaacaagatcttcccctcactagag
ttagacatcacagacttacttgaagacactcccagggagtgtcgaatctgcgggggtctg
gctctgtatgaatgcagggagtgctacgaggacggtgacatcactgccgggaagataaaa
cagttctgtgaaaagtgcaatacacaggttcacctccacccgaggaggaaggcccatcgc
cacggcaagttgtccgtccccaaggaactgcaagagggtgtgtggcggcagggtagcttc
cctcgccagcggatggagctgttcgctgtgctctgcatcgagaccagtcactacgtagcg
ttcgtcaagtacggccaccaagactctgcatggctcttcttcgacagtatggccgaccgc
gacggagggcagaatggcttcaacatcccccaggtgtctccatgtccggaggtgggggcc
tatctgaagatgacccctgaggagctgcacgccctggaccccaagagcatccagggccag
gcccgccgtctgctgtgtgacgcctacatgtgcatgtaccagagccccaccatgagccta
tacaagtag
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