Oncorhynchus tshawytscha (Chinook salmon): 112248204
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Entry
112248204 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 2
KO
K20051
low-density lipoprotein receptor-related protein 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112248204
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112248204
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
112248204
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Laminin domain-containing proteins
Laminin EGF-like domain-containing proteins
112248204
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
EGF
PLDc
Motif
Other DBs
NCBI-GeneID:
112248204
NCBI-ProteinID:
XP_024272806
LinkDB
All DBs
Position
LG04:complement(20555039..20563306)
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AA seq
1344 aa
AA seq
DB search
MAFCLLLCIAILEITVLSAAAQTPLNCNLGTKPCKDGSECVLHQHVCDGEADCRDGSDEE
DCTVACSNGQFLCAHGKKCIDQRQVCDGVAQCQDRSDELDCLNSMEGCVHHCDNKTRCLP
DTFLCDGERDCLDGTDEANCDSDSTDYLKSHHNVAEDSNNGNATMSAPAPLKCPFGTKPC
RDRIECVLYNHVCDGEADCKDGSDEEECILECERGQFQCAHGKKCIDQRQVCDGVAQCQD
RSDELDCLKPMEGCVHHCDKTRCLPDTFLCDGERDCLDGTDEANCADESCNSGEFRCTSG
QCLSVSMRCDGHPDCQDRSDEESCTEPPQCTTKLRCPQSQECLLEEWVCDREQDCKDGSD
EKNCTMVQLKCGDFQWACTSKSQCVPKAWRCDGTKDCADESDEAGCGQVATCPSHQFQCG
STWECLDTALVCNTVRNCANGSDEGGNCQAKCPDKTQCAHNCYSTPHGTRCGCKAGYRLQ
EDTVSCVDIDECEGGRPGVCSHLCVNTQGSFQCHCYPGYLLESDGRRCKITGEPYLLASV
QTELFLFGLRSSSLDVLVSSAKKAILSLDYDWRDQKVFWVSLDSESIKWSSLDQKKRGTL
VKGIKSDCIAVDWVGRNLYWIDGIGGGRIIAVGLNSTIINSMDLTVILDEDFEQPLSLAL
LPQKGIMFWSEIGNEVKIERAGMDGSERRVVVSHSLSWPGGLAVDTLGERIYWTDEKLRC
IGSANLDGGDIELLQMMETTNPFSVTVYNDLIYWSDTRRRTIQRAHKITGKNRKVLLKRP
GQPFGLKIIHPLLQTSNERPCENLRCSHLCVLGPGPKGVCKCPSGLLLAEDGLTCSNLVN
SAFLLVLSPTVVTQIYLQTMHSAVDLKSWPEHLALPLPNVNEAAMLDYTLQDQTLYLADS
GQSSVVLFKLKETGLVPRGQFLQLKGDTVTALALDWITLSVYWSSTKQPRLQVTSSSGEH
TAVLIQDIGSLESIALHPLSGRLCFTNLAKQGKXAQVECAHMDGVKRSXVWKDAFQPTSL
TFSNKGNEIYWADIGYGVIGSVRVDGTGYKEFKTGDGLTAFALSNGMLLWVTDSDTTKVW
YRDDPLTKKLWFEVNTEIVSLKAYSKSSQMGSNLCSDGNGDCSHLCLALPGGRTCRCAHD
HYPVNVTYCAPDQHCPAGSRPCLDGHTCFPLEKFCDGHPDCSDTSDENCVHLKGKSVKAK
APNQLPSPSFPIPADPGSTSLDNSWLVRNLEAQQCSEKHCNGNGECVETNGGISCTCGLG
YSGDSCQNQLTKTMQGPLIYGAIGLCAAIVVISVLAAVVKRKTANTRRANPVAKQTSMIE
LEKGEGCEGASPNSDFAEEVVSVD
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atggctttctgtttgcttctgtgtatagcaattttggaaatcacagtattgagtgcagca
gcgcagaccccgttgaactgcaacctgggcaccaaaccttgcaaggatggatctgagtgt
gtactccaccaacatgtgtgcgacggagaagccgactgtagggatggttctgatgaggag
gactgcactgtcgcatgcagtaatgggcagtttctgtgtgcccatgggaagaaatgcatt
gaccagcggcaggtgtgtgacggtgtggcccagtgtcaggaccgctctgatgagttggac
tgcctgaattccatggagggctgtgttcaccactgtgacaacaagacccgctgcctccca
gacaccttcctctgtgatggagagagggactgcctggatggcactgacgaagccaactgc
gattcagactctactgattatcttaaaagtcatcacaatgttgctgaggatagcaacaat
gggaatgccacaatgtctgcaccagcacccctcaagtgcccttttggcactaaaccatgc
cgggacaggattgagtgtgttctttacaaccatgtgtgcgatggagaggcggactgtaag
gatggctcggatgaggaagagtgtatattagaatgtgaacgtggccagtttcagtgtgca
catgggaagaaatgcattgaccagaggcaggtgtgtgacggtgtggcccagtgtcaggac
cgctctgatgagttggactgcctgaagcccatggagggctgtgttcaccactgtgacaag
acccgctgcctcccagacaccttcctctgtgacggcgagagggactgcctggatggcact
gatgaggccaactgtgctgatgagagctgcaatagtggggagttccgttgcaccagtgga
cagtgtttatccgtaagcatgcgctgtgacgggcatcctgactgtcaggatcgctctgac
gaggagagctgcaccgagcccccccagtgcaccaccaagctccggtgcccacaaagccag
gagtgcctgctggaggagtgggtctgtgatagggagcaggactgtaaagatggctctgat
gaaaagaattgcacgatggtccaattgaagtgtggcgatttccagtgggcctgtacatct
aagagccagtgtgttcccaaagcatggagatgtgatggaacaaaggactgcgctgatgaa
agtgatgaggcaggatgtggtcaggtagcaacatgcccctctcaccagttccagtgtggc
agtacgtgggagtgtttggacacagccctggtgtgtaacacggtcagaaactgtgctaat
ggttctgacgagggtggcaactgccaagcaaagtgtccagacaaaacccaatgtgcccat
aactgttacagcacaccacatggaacgaggtgtggctgtaaggctggttaccgactccaa
gaggacacagtgtcctgtgttgatattgatgagtgtgaaggcggtagaccaggtgtttgc
agccacctatgcgtcaacacccagggctccttccagtgtcattgctaccctggttacctg
ctggaatctgatggtcgccgctgcaagatcacaggtgagccctacctactggcctctgtg
cagactgagctgttcctgtttgggctgagaagcagcagtctggatgtcctggtgtcctct
gctaagaaagccatcctgtccctggactatgactggagggatcagaaagtgttctgggtc
agcctggattcagagagcatcaaatggtcctctctagaccagaaaaagagaggaactctt
gtcaaaggcatcaaatctgattgcattgctgttgactgggtagggagaaacctgtactgg
attgatggcattggaggtggtcggattattgctgttggattaaactcaaccatcataaac
tctatggatctcacagtcatcctcgatgaggacttcgaacaacctctctctctggcactc
ctgccacagaaggggatcatgttctggtcggagattggtaacgaggtgaagattgagcgg
gcgggaatggacgggtctgagaggagagtagtggtcagtcacagcctcagctggccaggc
ggtctggctgtggacacactaggggagaggatctactggacggacgagaagctccggtgc
atcggctcagccaacctggatggcggggacattgagcttctgcagatgatggagaccacc
aacccgttctctgtcacagtttacaatgacctgatctactggtcagacactaggaggaga
actattcaaagggctcataaaatcactggaaagaaccgcaaagttctactcaaacgacct
ggacaaccttttggactgaaaatcattcatccacttctgcagacaagcaatgagcgtccc
tgtgagaaccttcgttgctctcacctgtgtgtgctgggcccaggccccaaaggggtctgc
aagtgtccctctggtctgctcctagctgaggatggcctcacctgctccaacctggtcaac
tctgccttcctcttggtgctctcgccaactgttgtcacacagatctacctgcagaccatg
cacagtgctgtggatctgaaaagctggccggagcacctcgccctacctctccccaatgtc
aatgaggcagcgatgttggattacaccctgcaagatcagactctgtacctagctgactct
ggccaatcgtctgtagtcctcttcaagctgaaggagaccggcttggtgcctcgcggccag
ttcctgcaactcaaaggggacacagttacagccctggctctagactggataaccctcagc
gtatactggagtagcaccaagcagccacggctgcaggtcacctcttccagtggggaacac
actgctgtgttaattcaggatattggaagtctggagtccatagcgcttcacccactcagt
ggaagactctgttttaccaacctggccaagcaggggaagngtgctcaggtggagtgtgct
cacatggatggggtgaagcgctccnnggtgtggaaggatgcttttcagcccacctccctg
actttctccaacaagggcaatgagatctactgggctgacattggttatggggtgatcggc
tctgtcagagttgatggtactggatacaaggagtttaagactggggatggcctgactgca
tttgcactcagcaacggcatgctcctctgggtgacagacagtgacacaaccaaagtttgg
tatagagatgatccattgactaagaagctttggtttgaggtaaacactgaaattgtcagt
ttgaaggcgtacagcaagtccagccagatgggctccaacctctgctcagatgggaatgga
gactgcagtcacttgtgtttggctcttcctggtggtagaacctgtaggtgtgcccatgac
cattacccagtcaatgtcacatactgcgccccagaccagcactgcccagctggaagtaga
ccctgtctggatgggcacacatgcttccccctggagaagttctgtgacggacatcctgac
tgctctgacacttcagatgagaactgtgtccatctcaaagggaagtctgtcaaggccaaa
gccccaaaccagcttcctagtcccagctttcctatacctgcagatcctggctccacctct
ctggacaacagttggctggtgagaaacctggaagcccagcagtgtagtgaaaagcactgc
aatgggaatggggagtgtgtggagaccaatgggggcatctcctgtacctgtggtttaggc
tacagtggagactcctgccaaaaccagctcaccaagactatgcaaggcccactcatctat
ggggccattggcctctgtgctgcaattgttgttatcagtgtcctcgctgcggtggttaag
aggaagactgcaaacacaaggagagccaaccctgtggcaaagcagactagtatgattgag
ctggagaagggtgaaggttgtgaaggagcttcacctaacagtgactttgcagaggaagtg
gtgtctgtggattaa
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