Oncorhynchus tshawytscha (Chinook salmon): 112248313
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Entry
112248313 CDS
T05605
Symbol
aptx
Name
(RefSeq) aprataxin
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112248313 (aptx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112248313 (aptx)
Enzymes [BR:
otw01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
112248313 (aptx)
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
112248313 (aptx)
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
112248313 (aptx)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
112248313 (aptx)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
112248313 (aptx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
FHA_2
zf-C2HE
HIT
FHA
zf-C2H2_4
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
112248313
NCBI-ProteinID:
XP_024272995
LinkDB
All DBs
Position
LG04:10321401..10323136
Genome browser
AA seq
348 aa
AA seq
DB search
MSICLLISKNGRHKPIHLPHLQTVVLGRSPETTIKDKKCSREQVELKADCNKGYISVKQL
GFNPTSVDSEVVGKGNQVEMRSGQQLHMVNELYPYTVCFKEDPSNSQSSVSTKRPCGPAS
EEREFHREPPGHKVPRKTEDSTQCKHGGSTSTNTRPEPQTTEKTETLGYWSQGLKASMQD
PKMQVYKDDRVVVIMDKYPKAHYHWLVLPWESIPSLKTLHRGHCDLLRHMNQVADRIVQQ
QCPDAGLLHFRQGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFTTDYFIESQEVIQM
LEKDGKVTVKEGTNELLKLPLCCHVCGMALSTIPQLKEHLKSHPYGRL
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgtctatttgtttgctgatcagcaaaaatggaaggcataaaccgattcatctacctcac
ctacagacagttgtcttgggtcggagtccagaaacaacgataaaagacaaaaaatgttcc
agggagcaagttgagctcaaggctgactgcaacaaagggtatatcagtgtaaaacaactg
ggtttcaaccccactagtgtggactctgaggtggtgggcaaaggcaaccaagtggagatg
agatctggccagcagctgcacatggtcaatgagctgtacccttatactgtgtgcttcaaa
gaggatccatccaactctcagtccagtgtgagcaccaagaggccctgtgggcctgcctca
gaggagcgggagtttcacagagagccccccgggcataaagtaccaaggaaaacagaggac
tccactcagtgcaagcatggagggtccacctccactaacacacggcctgaacctcaaaca
acagagaaaacagaaactttaggatattggagccaaggattgaaagcctcaatgcaagac
cccaaaatgcaggtctacaaggatgacagagtagttgttatcatggacaagtaccccaag
gctcactaccactggctggtcctgccctgggagtccatccccagtctgaagacactgcac
agggggcactgtgatctgttgaggcacatgaaccaggtagcagacaggattgtacaacag
cagtgccccgatgctggcttgttacacttccgccagggctaccacgccatccccagtatg
agccatgtccatctacacgtgatcagccaggactttgactccccttgtttaaagaacaag
aaacactggaattcattcacaaccgactatttcatagaatctcaagaagtcatccagatg
ctggaaaaggatgggaaggtcacagtaaaagaagggacaaatgagttgttgaaactacct
ctctgctgtcacgtgtgtggcatggcgctgtccaccataccacaacttaaggagcacctg
aaatctcacccctatggtagattgtga
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