Oncorhynchus tshawytscha (Chinook salmon): 112248320
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Entry
112248320 CDS
T05605
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112248320
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
112248320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
ERCC3_RAD25_C
CUE
Tom22
HHH_3
Motif
Other DBs
NCBI-GeneID:
112248320
NCBI-ProteinID:
XP_024273001
UniProt:
A0A8C8CLS2
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All DBs
Position
LG04:complement(10440860..10464240)
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AA seq
1008 aa
AA seq
DB search
MSLFNLDRFRFDNNKTTSNQDKYTGSVSPESEKENKPARVTTPIANLGKPGRGVVFEDVI
SDPDDDLASDSRRDKLTKVVNSFREPVKLEVREMTEPYDKEDQVDKTLEERLYKLQEIFP
NRNRKELLEVIESTSTLDGAVASCLMMFGDKDSTRKRKPDGSSSCRDKDVVQQPSKRRRT
SLAEDSEEEGAEPSWERQEAMVRKLQRKFPDQDKEELRAVLQEHEWNVADALEALRMFSD
PEEYTSSPEVKQKEPKVKSDTKPSNSKSDAKPSRESKDGMEEAKPSKASPLKWMFKKFAP
ESKPTSSSNLQSLKMSNGTSMARKEAVERKRNAHTSDERASSSEDEEATSSEFEDEDEEL
DSGAEDEGTSTLQGQILLFFQEASLDELSLITGCSVKKAKKIVELRPFAFWHKLKEQFHK
EKGLSVELLLGCRVVLRERAVVRGLMSKCQNISGRMVKGVSQVIDNGMGSMTQPSILNRK
LKLKPYQLIGLKWLLLLHQHKLSGILADEMGLGKTIQAIAFLARLYQDGIKGPHLITVPA
STLDNWVRELKLWCPSLKVLVYYGSVEDRQYLRHDILNNRVDFNVIVSTYNLAIGNDSDR
SLFRKLKLKYAVFDEGHMLKNMKSLRYRHLMAINAEHRLLLTGTPVQNNLLELMSLLNFI
MPSMFSSSTTQIAKMFSMKSHEEQSRFERDRIAQAKLIMKPFILRRVKTEVLKLLPAKEE
KLVFCPMSEKQQQLYQTMVGRFKKSAIGEKRELCNVMMQLRKMANHPLLHRQYYTTERLE
AMSSLMLKEPTHFDADPVLIQEDMAVMSDFELHRLCQQYSSLDKYQLDKDLLLDSGKFHL
LQTLLATLKTKGDRVVLFSQFTMMLDILEILLKHLGHRYIRLDGSTPIADRIVLIDDYNT
DPEIFVFLLSTRAGGLGINLTSANVVIMHDIDYNPYNDKQAEDRCHRLGQTRTVQVIKLI
QKDTIEGCMLQLGQKKLKLEQDMTAAEEGDEGTIPEDMASLLKASLGL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgagtttatttaatttggaccggtttcgttttgacaataataaaacaacgtcaaaccag
gacaaatacaccggttccgtaagtccagagtcagaaaaggagaataaaccagcacgagta
acaacacctatagccaaccttggaaaacctgggcgaggagtagtgtttgaagatgtcatc
agtgaccctgatgacgatttggcaagtgattcgaggagggataaattaacgaaagtggtg
aattctttcagggaaccagtgaagctagaggtaagagagatgactgagccatatgataag
gaagaccaagttgacaagacgctggaagagagactgtacaaactgcaggaaatcttccct
aacagaaacaggaaggagttgttggaggtgattgaaagcacaagcactttagatggtgcc
gtagcctcatgcctgatgatgtttggtgacaaagactcaacgaggaagaggaaaccggac
ggatccagcagttgtcgagacaaagatgtggtccagcagcccagcaagaggaggagaacg
tctctggctgaagactctgaagaagagggcgcagagcccagctgggaaagacaggaggcc
atggttaggaaactgcagaggaaattccctgaccaggataaggaagaactcagggctgtg
ctccaggaacatgagtggaacgtagccgacgccttggaggcgcttcgcatgttctctgac
ccagaggaatacaccagctcccctgaagtcaagcaaaaggaacccaaagtcaagagcgac
accaaaccaagcaacagcaagagtgacgccaagccaagcagagagtccaaggacggcatg
gaggaagccaagccaagcaaagcttcccctctgaaatggatgttcaagaaatttgcccct
gaatccaaacctacctcctcttcaaatttgcagagcctgaagatgtccaatgggaccagc
atggctagaaaggaggcagtggagaggaagaggaatgctcacacctctgacgagagggcc
agcagctcggaggacgaggaggcgaccagcagcgagtttgaggacgaggacgaggagctg
gactctggggcggaagacgagggcacatccacgctacaaggccagatcctgctcttcttc
caggaggcctcgctggacgagctgtccctcatcaccggctgttcggtgaagaaggccaag
aagatcgtggagctgcggccttttgctttttggcacaagctgaaggagcagttccacaag
gagaaaggcctgtctgtggagctgctgctgggctgcagggtggtgctgagggagagagcc
gtggtccggggtctcatgtccaagtgccagaacatctcgggcaggatggtgaagggagtc
agccaggtcatcgacaacggcatgggctccatgacccagccctccatcctcaacagaaag
ttaaaattgaaaccctaccagttgattgggctgaagtggcttctcctgctgcaccaacac
aagctgagtggaatcctggctgatgagatgggtttgggaaagaccatccaggccatagcc
ttcctggccaggctgtaccaggatggcatcaaaggcccccacctcatcactgtgcccgcc
tccaccctggataactgggttcgggagctaaagctgtggtgccccagtctcaaggtgcta
gtctattacggctctgtggaggaccggcagtatctgcgacatgacattctgaataatcgg
gtggacttcaacgtcatcgtgtccacatacaacctggccatcggcaacgacagcgaccgc
agtctcttccgcaagctcaaactgaagtatgccgtgtttgacgagggccacatgctgaag
aacatgaagtccctccgttaccgccacctcatggccatcaatgctgagcaccggttgctc
ctgactggcacccctgtgcagaacaacctgctggagctgatgtcgctgctcaacttcatc
atgccctccatgttctccagcagcaccacgcagatagccaagatgttctccatgaaatcc
catgaggagcagagtcgtttcgagagggaccgcatcgcccaggctaaactcatcatgaaa
cctttcatcctcagacgagtcaagactgaggttcttaagctgctgccagcgaaggaggag
aagttggtattctgcccgatgagtgagaagcagcagcagctttaccagaccatggtgggc
aggttcaagaagtctgccatcggagagaagagagagctgtgcaacgtgatgatgcagctg
aggaagatggccaaccaccctctgctccaccgacagtactacaccacagagagactggag
gccatgagtagcctcatgctcaaggagccgacccattttgatgcagacccagtgctgatc
caagaggacatggctgtgatgtctgactttgagctccacaggctgtgccagcagtactcg
tccttggacaaataccagctggacaaagaccttctactggactctgggaagtttcacctg
ctccagacactacttgccacgctcaagaccaagggagaccgagtagtgctcttcagtcag
ttcaccatgatgctggacatcctagagattctgctcaaacacctgggccaccgctacatc
agactggacggctccacgcccatagcagacaggatcgtgctgattgatgactacaacacg
gacccggaaatctttgtgttcctgctgtcgacgcgggccggaggcctgggtatcaacctg
acctcagccaacgtggtcattatgcatgacatcgactacaacccttacaatgacaaacag
gctgaggaccgttgccacagactagggcagaccaggacagtccaggtgatcaagctgatc
cagaaggacaccatagagggctgcatgctgcagctgggtcagaagaaactcaaactggag
caggatatgactgctgccgaggagggtgacgagggcaccatacccgaggacatggcctct
ctgctcaaagcatcactgggcctgtga
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