Oncorhynchus tshawytscha (Chinook salmon): 112248321
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Entry
112248321 CDS
T05605
Name
(RefSeq) replication factor C subunit 4 isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03030
DNA replication
otw03410
Base excision repair
otw03420
Nucleotide excision repair
otw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112248321
03410 Base excision repair
112248321
03420 Nucleotide excision repair
112248321
03430 Mismatch repair
112248321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
otw03032
]
112248321
03036 Chromosome and associated proteins [BR:
otw03036
]
112248321
03400 DNA repair and recombination proteins [BR:
otw03400
]
112248321
DNA replication proteins [BR:
otw03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
112248321
DNA Replication Termination Factors
ELG1-RFC complex
112248321
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
112248321
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
112248321
Check point factors
HRAD17(Rad24)-RFC complex
112248321
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
AAA_lid_RFC1
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_16
AAA_assoc_2
AAA_22
AAA_30
AAA_11
Mg_chelatase
DUF815
SLFN-g3_helicase
RuvB_N
AAA_28
AAA_14
AAA_5
Gp44_lid
AAA_24
AAA_19
Cdc6_lid
RPA_interact_N
ResIII
AAA_7
Kinesin
ATPase_2
Motif
Other DBs
NCBI-GeneID:
112248321
NCBI-ProteinID:
XP_024273007
LinkDB
All DBs
Position
LG01:complement(25063875..25074071)
Genome browser
AA seq
357 aa
AA seq
DB search
MQAFLKGTSTQGTRPLKEKGAGTSGEKKQKSVPWVEKYRPKCMEEVAFQEEVVAVLKKTI
EGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKRF
AQLTVAGHRTDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYVSRI
IEPLTSRCSKFRFKPLANQVQEERLLEICYKENLKYSKEGIAALVKVSEGDLRKAITFLQ
SAARLNTDNEITESAVIEIAGVVPPKMIDNLLKICYKGTFEKLEIAVRNMVDEGYAATQI
INQLHEAIIEEELNDKQKSAITEKMAVVDKCLVDGADEYLQMLSLCSVILQQATQSN
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgtttttgaaaggaacatctactcaaggcaccagacctctgaaagagaagggt
gccgggaccagtggagagaagaagcagaagtctgtcccctgggttgagaaatataggcca
aaatgtatggaagaggtggcatttcaagaggaggtggttgctgtgctgaagaagactata
gagggcgccgatctccccaatctgctgttctatggaccacctggaacaggaaagacctcc
accatcctggctgcagccagggaactttatgggccagagctgtaccgacagagagtcctg
gaactgaacgcctctgatgagagagggattcaggtggtcagagagaaagtcaagagattt
gcccagctgactgtagcaggacaccgcactgatgggaaaccatgcccaccctttaagatc
atcatcctggatgaggctgactcaatgaccaacgctgctcaggctgctctcagacgcacc
atggagaaggagtcccggaccacccgcttctgtctcatctgcaactatgtcagcaggatt
attgagcccttgacatccagatgctcaaaattccgcttcaaacctctggccaatcaggtc
caagaagagcgcctgctagaaatctgttacaaggagaatctcaagtactcgaaggaggga
attgcagcgttggtgaaggtttcagagggggatctgagaaaagccataacctttcttcaa
agtgctgcacggctgaacacagataatgagatcacggagagcgcggtcatagagatagca
ggggttgttccccccaagatgatcgacaatttgcttaaaatctgttacaagggcacattt
gaaaaactagagattgctgttcggaacatggtagatgaaggctatgccgccacacagatc
atcaaccagctacacgaagccatcatagaggaagagctgaacgacaagcagaagtctgcc
atcacggaaaagatggcagtggttgataagtgtctagtggatggtgcagatgagtacctg
cagatgctgagtctgtgttctgtgatcttgcagcaagccacacagagtaactga
DBGET
integrated database retrieval system
