Oncorhynchus tshawytscha (Chinook salmon): 112248338
Help
Entry
112248338 CDS
T05605
Name
(RefSeq) guanine nucleotide exchange factor DBS isoform X1
KO
K20685
guanine nucleotide exchange factor MCF2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112248338
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112248338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
CRAL_TRIO_2
PH
SH3_9
SH3_2
SH3_1
PH_10
GlutR_dimer
Spectrin
Motif
Other DBs
NCBI-GeneID:
112248338
NCBI-ProteinID:
XP_024273047
LinkDB
All DBs
Position
LG01:25083742..25153239
Genome browser
AA seq
1297 aa
AA seq
DB search
MSSADILAICCGGMMDGSPRYQTIPSRCSVCGRHTGGASSMVRISAGEMESYHRFLGVCQ
KTESATGRNEIMQQEIRPLLAVDIIEQLHRQFALLSGGRGKDGAPIITFPEYSGFGDLVA
EDFQNVVTYLTSIPSLDVASIGFVIIIDRRRDKWSSVKASLTRIAGAFPGNLQLVLVLRP
SRFFQRAIADIGMKLHRDDFKMKVPIVMLNSLSDLYGYVDKGQLTCELGGNLDYCHSQWI
HRRTAIENFAVTVKTTAQMLQKFGIDLAETELPNDVQCTKDLLTTHTEKHDKLKDELKLA
MKQGITLLGCIKEQAAKSENHQLNPDEMENHITVERLLAQLDETENAFEQFWSKHHLKLE
QCLQFRHFEHDFREVKVSLDSLMATLTALSDIGDCVTLVDMLLKDLKTLEEKAQESLEKA
QLHALHGDQLIQSNHYSVDSIRPKCVELRRICDDFTNEAQKKYDVLSKSRQIHKGIDKVN
QWCESGVYLLASQAVDKCQSQEGAEAALQDIEKFLETAKENQLSDLKNIHNQYELVLNIE
VKANVQKALKRLDDVQEMFEKRQVSLKKLSAKQTRPVQPVAPRPESSPKRPAPHKTPKTT
CAAPALSRRISENSSATKQPTEAELAKRKNVSRKVKGSLKIEVMHEASQGGSSHVLVTNE
TEESLSNRRRHIMNELIETERLYVEELQSIMEGYAAELDNTELSPLIPAALENKKDVLFG
NLPEIYEFHNRTFFKELENCMERPELVGTCFLKRKEELQIYEKYCQNKPRSEALWRQCGD
SLFFQECQKKLDHKLSLDAYLLKPVQRITKYQLMVKEMLKCSKNQEGTAELEEALATMLD
IIKSVNDSMHQIAITGFEGNLSELGKLLMQGSFNVWTDHKKGHSKVKDLARFKPMQRHLF
LYNKMLLFCKKREETTDGHEKPSASYSFKHSLKMSAVGITENVKGDIKKFEVWYNGREEV
YIIQAPSMDVKNMWVSEIRKVLTGQLEACREASQLHQKITENVYHAPMRNMRKMALRQSD
SSSPETGFRRSNPSPNMRQKRADASATNNPDHNGYLARKRFTLQGLSNRRSLPSAEAPSK
ETDVTRRFSVASSISVSATSRTKGPPSTNVRKTKRHEIKSDPTPFGYEDTLRGAIPAASR
HKGTTGTDSAVPRSTSQPGWTQRCLPSMDTEDFETIHSSAEELSNSSDGEDESSNKNDHD
RFRVQLTYESRTAQDLSLESGDLVQFLEEAEDGHWLVKNLIPQKTGLVPPSVLQTAAGGG
HSDSNTTDIFSDMCTAALSDSEENENPRWGDVSQDSR
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtgcagatattttggcaatctgctgtggtgggatgatggacggctccccgcgg
taccagaccatcccctcgcggtgttcggtatgtgggaggcacacgggtggcgcttcctcc
atggtgcgtatctctgccggggagatggagtcctaccaccgctttctgggggtgtgtcag
aagactgagtcagccacagggagaaatgagatcatgcagcaggagatcaggcccttgctg
gctgtcgacatcatagagcagctgcaccggcagtttgccctgctctcaggaggaagaggg
aaagatggtgccccaatcatcaccttcccggagtactcaggcttcggcgacctcgtagcg
gaggacttccagaatgttgtaacatatctgaccagcatccccagtttggacgtggccagc
atcggtttcgttataatcatcgaccgcaggcgggacaaatggagctcagtgaaggcctcg
ctgacgcggatagcgggggcatttccagggaacctccagctggtgttggtgctgaggccc
tcccgtttcttccagagggccatcgctgatattggcatgaagctgcaccgggatgacttt
aaaatgaaggtaccgattgtgatgctcaactccctatctgacttatatggctacgtggat
aagggccagctaacatgtgagcttggtgggaacctggactactgtcacagccagtggatc
caccgccggacagccattgagaactttgctgtgacggtgaagaccacggctcaaatgctg
cagaagttcggtatagacctggcagagacggagctgcccaatgatgtgcagtgcaccaaa
gacctcctcactactcacactgagaagcacgacaaactcaaggatgaactgaaattagcg
atgaaacagggaatcactctactgggctgtatcaaagagcaggctgccaagtctgagaac
caccagctaaacccagacgagatggagaaccacatcactgtggaaaggttgttggcccag
ctagatgagacagaaaacgcttttgaacagttctggtctaaacatcacctcaaactggag
cagtgcctacagttccgccattttgagcatgacttccgagaggtgaaagtgtcattggac
agtctgatggcgactctgacagccctgtcagacattggggactgtgtcaccctggtagat
atgttactgaaggacctcaagaccttagaggagaaggctcaggagtcgttagagaaggcc
cagctccacgccctacacggggaccagctgattcagagcaaccactattctgtggactcc
atacggcccaagtgtgtggagctccgacgcatctgtgatgacttcaccaacgaggcccag
aagaagtacgacgtcctctccaaatcacgccaaatacacaaaggcatagacaaggtgaac
cagtggtgtgagtcgggggtgtacctgctggcctctcaggctgtggacaagtgccagtcc
caggaaggggctgaggcagccctgcaggacattgagaagttcctggagacggccaaggag
aaccaactgagtgacctcaagaacatccacaaccagtatgagctagtcctcaacattgaa
gtcaaggctaatgtacaaaaggctctaaagaggctggacgatgtacaggagatgtttgag
aagagacaagttagtctgaagaagctgtcagccaaacagacccggcccgtccagcctgtg
gccccccggcctgagtcctctcccaaacgtcctgcgccccacaaaacacccaagaccacc
tgcgctgcccctgccctcagtcgaaggatctcagagaactctagtgccacaaagcagccc
acggaagctgagcttgcaaaaaggaaaaatgtaagccgcaaagtcaaagggagcctcaag
attgaggtaatgcatgaggcaagccagggaggttccagccacgtcctggtgacgaacgag
acagaggagagtctttcaaacagacggagacacatcatgaatgagctgattgaaactgag
aggctgtacgtcgaggagctgcagagcatcatggagggatatgctgctgagctggacaac
acagagctttcccccctcatccccgcagccctggagaacaagaaagatgtactgtttggc
aatctcccagaaatatatgaatttcacaacaggacatttttcaaagagcttgaaaattgc
atggaaaggccagaattggtagggacctgctttttgaaaaggaaagaagagctgcagatc
tatgagaagtattgtcagaacaagccccgatcagaggcactgtggagacagtgtggagac
agcctgttcttccaggaatgtcagaagaagctggaccacaaactctccctggatgcttat
ttactcaagcctgtgcagaggatcaccaagtaccagctgatggtcaaggagatgctgaaa
tgcagtaagaaccaggagggtactgctgaattggaggaggcccttgccaccatgctggac
atcatcaagtctgtcaatgactccatgcatcaaattgccataacgggattcgaggggaac
cttagtgagctgggcaagctcctgatgcagggctcattcaacgtgtggacggaccacaag
aagggccacagcaaggtgaaggacctggctcgcttcaagcccatgcagaggcacctgttc
ctctacaataagatgctgcttttctgtaagaagcgggaggagaccacggacggacacgag
aagccgtccgcctcctacagcttcaaacactccctaaagatgagtgctgtgggaatcacc
gaaaatgtcaaaggagacattaagaagtttgaggtctggtataacggcagagaggaagtt
tacatcattcaggctccctccatggatgtgaagaacatgtgggtgtcagagatccggaaa
gttctgacaggccagctcgaagcgtgcagagaggctagtcaactccatcagaagatcact
gagaatgtgtatcatgctcccatgagaaacatgcgcaaaatggccctgaggcagtcggac
tcgtctagcccggagacaggcttcaggaggagcaaccccagccccaacatgagacagaaa
cgagctgatgcttctgccactaataaccctgaccacaatggttatctcgctagaaagcgt
ttcaccttgcagggcctctccaacagaaggtctcttccctcagccgaggctccatctaag
gagacagatgtcacacgccgcttctctgtagcctcctctatcagtgtctctgccaccagc
cgcacaaaaggtcctccttcaactaatgttagaaagaccaaaagacatgagataaaaagt
gatccaacaccattcggttatgaagatacattacgcggtgctatccctgctgcgagcaga
cacaaaggcaccacaggcacagattcagccgtgcctagatccacttctcaaccaggctgg
acccaacggtgtttgccttcaatggacacagaggactttgaaaccatccattcaagtgca
gaggagctctccaactcttcagatggcgaggatgagtccagtaataaaaatgaccatgat
cgcttccgtgtccaattgacatacgagtcgaggacggcacaggacctgtctctggagtca
ggagatttagtacagttcctggaggaggcagaggatggccactggctagtcaagaatctt
attcctcagaagacaggtctggtaccgcccagtgtacttcagacagcagcaggaggtggt
cactcagacagtaacactactgatatcttcagtgacatgtgcacagcagctctgtctgac
tctgaggaaaatgaaaaccctaggtggggagatgtatctcaagacagcagatag
DBGET
integrated database retrieval system
