Oncorhynchus tshawytscha (Chinook salmon): 112248344
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Entry
112248344 CDS
T05605
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
otw03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112248344
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112248344
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112248344
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112248344
03036 Chromosome and associated proteins [BR:
otw03036
]
112248344
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112248344
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112248344
SWI/SNF complex
112248344
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112248344
PBAF complex
112248344
SWI/SNF complex
112248344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
112248344
NCBI-ProteinID:
XP_024273054
UniProt:
A0A8C8CSE1
LinkDB
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Position
LG04:23068242..23073700
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AA seq
385 aa
AA seq
DB search
MRMLIRADLCCYISNMALSKTFGQKPVKFQLEEDGDYYMIGSEVGNYLRMFRGSLYKRYP
SLWRKLASVEERKKIVESSHDHGYTTLATSVTLLKASEVEEIFEGNDEKYKAISISTEPP
AYLREQKGKRNSQWVPTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIH
ENATQSEVLVPIRLDMEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAI
ASAIRQQIESYPTDSILDEQTDQRVIVKLNIHVGNISLVDQFEWDMSERENSPEKFALKL
CSELGLGGEFVTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGEADQWCPLLETLT
DAEMEKKIRDQDRNTRRMRRLANTW
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatgctcatccgcgctgatctttgttgttacatttccaatatggcgcttagtaag
acatttggacaaaaacctgtcaaatttcagcttgaagaagatggggattattatatgatt
gggtcagaggtaggaaattacctgcgtatgttcagaggttccttgtataagagatatcca
tcactatggaggaaactggcatcagtggaggagcggaagaaaatagtggaatcatcacac
gatcatggttacacaaccttagctaccagtgtgacccttctgaaggcatcagaggtagag
gagatcttcgaaggaaacgatgagaagtacaaagctatctccatcagcacagagccccca
gcttacctcagggagcagaagggtaagcggaatagtcagtgggtccccacgctacccaac
agctctcatcacctggatgctgtcccctgctccaccactatcaaccgcagccgcttaggc
cgagacaagaagaggaccttcccgctctgttttgatgatcatgatcctgcagtgatccat
gagaatgccacccagtctgaggttctggttccaatccgactggacatggagatagagggg
cagaagcttagggatgctttcacctggaatatgaacgagaagctcatgactcctgaaatg
tttgcggagatcctgtgtgacgacctggacctgaaccccttggcctttgtcccagccatc
gcctcagccatccgccagcagatagagtcctatcccacagacagcatcctggatgaacag
actgaccagagggtcatcgtcaagctaaacatccacgttggaaacatctcgctcgtggac
cagtttgagtgggatatgtcagaaagggagaactccccagagaagtttgccctgaaactg
tgctcggagctgggcctagggggagagtttgtcaccaccattgcttacagcatccgagga
caacttagttggcaccagaggacatacgctttcagtgagaacccgctgcccacggtagag
atagccatccggaacacaggtgaagctgaccagtggtgcccactgctggagacactgaca
gatgcagagatggagaagaagatcagggaccaggatagaaacactcggcgcatgagacga
ctggcaaacacatggtag
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