KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112248368
Entry
112248368         CDS       T05605                                 
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112248368
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:otw03041]
    112248368
Spliceosome [BR:otw03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    112248368
 Complex B
    112248368
 Complex C
   U2 SnRNP specific factors
    112248368
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 112248368
NCBI-ProteinID: XP_024273093
LinkDB
Position
LG04:complement(24358713..24367738)
AA seq 787 aa
MPPGPVQIVQLEPNNRADESTEETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEA
RIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKGQEPSAAVPKVMQQQALQNSQQLP
QKVQAQVIHETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKE
QRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLIKLKRESENPREVLDQVRYRVEW
AKFQERERKKEEEEREKERVSYAQIDWHDFVVVETVDFQPNEQGHFPPPTTPEELGARIL
TQERYDKFGESEEVEMEVESEDEEDDEREERDDGRPTQPDQDTQLQDMDEGSDDEEDGKA
PLPPDNPMPPPLPPTPDQVIIRKDYDPKASKPQPPAKTLDEYLISPITGERIQASKMQEH
MRIGLLDPRWLEQRDRGIRERQIEDEVYAPGMDIESSLKQLAERRTDIFGVEETAIGKKI
GEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVQEDESKEKIGPS
KPELYHHHQSPLISSAPLLPKPSPPMNTMARAPPSMLPPVRTTLLSAVPVIPRPPMAPVQ
MRLAPGQVLTPMPPMMHAPRINVVPMPQPPHMMAPRPPPMVVPTSFVPAPPVXAAPRPDP
QPPSHPPPRHDDEPVTKKMKTEDNLIPEEDFLRIYKGSVSVKVQVPNMQDKTEWKLSGQA
LNFTVPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMNNGSVIHLALK
ERGGRKK
NT seq 2364 nt   +upstreamnt  +downstreamnt
atgccgcccgggcctgtacaaattgttcaactggagcccaacaacagggcagatgagtca
acagaggaaaccccagcaacgaaacccatagttgggatcatctatccacctcctgaggtc
cgaaacatcgtcgacaagactgccagttttgtagccaggaatggaccagagttcgaggca
aggatccgtcagaatgagatcaacaacccaaagttcaacttcctgaaccccaacgaccca
taccatgcttactaccgccacaaagtcaatgaattcaaggagggcaagggccaggagccg
tctgcggccgtaccaaaggtcatgcagcagcaggccctgcagaactcacagcagcttcct
caaaaggtgcaggcccaggtgattcatgagacagtggtgccaaaggagcctccacctgag
tttgagttcattgctgaccctccttcaatctcagcattcgacctggatgttgtcaagctg
accgcccagtttgttgctcgcaacgggcgccagttcctcacacagcttatgcagaaagaa
cagcgaaactaccagtttgacttcctgcgacctcaacacagcctcttcaactacttcacc
aagctggtggagcagtacactaagattctgatccctcccaagggacttctgataaagctg
aaaagagagtctgagaaccccagggaggtgctggaccaggtgaggtaccgtgttgaatgg
gcgaagttccaggagcgtgaaaggaagaaggaggaggaggagcgggagaaagaacgtgtg
tcctacgcccaaattgactggcatgactttgtagtggtggagaccgtggactttcagcct
aatgaacaaggccacttccccccacccaccacacctgaggagctgggagctcgcatcctg
acccaggagcgttatgacaagtttggagagagtgaggaggtggagatggaggttgaaagt
gaggatgaggaggacgatgagcgggaggagcgggatgatgggcgtcccacacagcctgat
caggacacacagctgcaagacatggatgagggttctgatgacgaggaagatggcaaggca
ccattgcccccagacaaccccatgccacccccactgccccctactccagaccaggtcatt
atccgcaaggactatgaccccaaagcctccaagccacagcctccagccaagactctggat
gagtacctcatctctcccatcacgggtgagaggatccaagccagtaagatgcaggagcac
atgcgcattgggctactggatccccgctggctggagcagagggaccggggcatcagagag
aggcaaatcgaggacgaggtttacgcccctggcatggacattgagagcagcctgaaacag
ttggctgagaggcgtactgatatctttggtgtggaggagacagccatcggtaagaagatt
ggagaagaggagatccagaagcctgaggagaaggtgacctgggatgggcactctggcagc
atggcgcgtactcagcaagcagcacaggccaacatcaccctacaggagcaaattgaggcc
attcacaaggccaagggactggtgcaggaggatgaaagcaaagagaagattggaccgagc
aagcctgagctttaccatcatcatcaatcacccctcatctcctctgccccccttctgccc
aaacccagccctccaatgaacacgatggctcgggcccctccttccatgctgccgcctgtg
cgcaccactctcctgtcagctgtgcctgtgattccacggccccccatggcccctgtgcag
atgcgcctggccccagggcaggttctaacacccatgcctcccatgatgcatgctccccgc
atcaacgtggtacccatgccccaaccacctcacatgatggcccccagaccaccccccatg
gtggtaccaacttcatttgtccctgcccctcctgtcnccgcagccccccgccctgaccct
cagccaccttcccacccacccccacgccatgatgatgagcctgtcaccaagaagatgaag
acagaggacaaccttataccagaggaggatttcctccgcatatacaagggttcggtgtcg
gtcaaagtacaagttcccaacatgcaggacaagacggaatggaagctaagtggacaagcg
ctcaacttcactgtcccactcacagatcaggtatctgttattaaagtcaaaatccatgaa
gccactggcatgccagctggaaaacaaaagctacagtatgagggaattttcatcaaagat
tccaactcgctggcctactacaacatgaacaacggttcagtcatacacctggcactgaag
gagagaggtgggagaaagaagtga

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