Oncorhynchus tshawytscha (Chinook salmon): 112248430
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Entry
112248430 CDS
T05605
Name
(RefSeq) synapsin-1 isoform X1
KO
K19941
synapsin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112248430
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112248430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Synapsin_C
Synapsin
Synapsin_N
Motif
Other DBs
NCBI-GeneID:
112248430
NCBI-ProteinID:
XP_024273220
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All DBs
Position
LG04:complement(26596420..26626914)
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AA seq
682 aa
AA seq
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MNYLRRRLSDSNFMSNLPNGYMTDLQRPDLPQQDPAVVSPGPPERRLSTNQQSEGTGSGS
GAGFLSSFTKAVKQTTAAVAEKVTEVADKAGVASGAKILLVIDDQQTDWVKVFKGKKVHG
EFDIKVEQADFSEINLIAHATGGYSVDIEAIRNGTKVTKCFRPDFVLVRQHAFSMAKNGD
HRHIVIGLQYAGLAGVNSLHSVYNFCDKPWVFANMVRLYKQLGPEEFPLIEQVYYPNHRE
MITTPGFPVVVKMGHAHSGIGKVKVDNQYDFQDIASVVALTKTYATSEPFIDAKYDVRIQ
KIGDNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYRMWVDSCSEVFGGLDMCAVEALHG
KDGKDYIIEVVGCSMPLIGDQQGEDRDQIADLVISKMNQTVPRTASPSPVRPTAAQPVQK
ATSSQPISQPKVPQAQQRPSPQGGPQQTPTGTATPRQGSPSQQRPSPQGQPPSPGPNTQN
PPAQTSQKGTNPGAGAQQRPPGQGQKPPSGQGSPQRSMSQGGSPQNQRPQQSGPQLQQSP
PLGGMGQKSTGGQPQQRPQQKPGQPARQQSQGGGPQGPQQQRAPAQQGRPGAPTTQQPRL
SAQGQGGPGGKPPLQQKPQPPQKPNQDPPAMGAIPPLNKSQSLTNAFNIPETPTPRASLS
QDEVKAETIRNLRKSFASLFSD
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgaattacctgcgtcgtcggctgtcggacagcaattttatgtccaatttgcccaatggg
tacatgactgatctacaacgccctgacctgccgcagcaagaccctgcagtagtgtcgcct
ggaccaccggagaggcgtctgtctaccaaccagcagtcggagggcactggcagcggatcc
ggagctggatttttatcttcctttactaaagctgtcaaacaaaccactgctgctgttgct
gagaaagtcaccgaggtagcagacaaagcaggcgttgcctctggtgccaagatactcctg
gtaattgatgaccaacaaacagactgggtaaaggtcttcaaaggtaaaaaggttcatggt
gaattcgacattaaggtggaacaggctgacttctctgaaatcaacctaatagcgcatgct
acagggggctatagtgttgatatcgaagcaatccggaatggaaccaaggtcaccaagtgt
ttcaggccagactttgtgctggttaggcagcatgccttcagtatggccaagaatggagac
caccgacacatagtgattgggttacagtatgctggtctcgcgggtgtaaactctctacac
tctgtctacaacttctgtgacaaaccatgggtgtttgctaatatggtgagattgtacaag
caacttggaccagaggaattcccactgatcgagcaggtttactatcccaaccacagagaa
atgattaccactcctggtttccctgtggtggtgaaaatggggcacgcccactcagggata
gggaaggtgaaagtggacaatcaatatgacttccaagatattgccagtgttgttgccctg
accaagacctatgccacatctgaacctttcatcgatgcaaagtatgatgttcgcatccag
aagattggagacaattacaaggcctacatgcgcacatcaatttcagggaactggaaaacc
aacactggttcagctatgctggaacagatagccatgtcagacaggtatcggatgtgggtg
gactcctgctctgaggtgtttggcggtttggatatgtgcgctgtggaggctctgcatgga
aaagatggcaaggattacattatagaggtggtgggttgctccatgcctctgattggagac
cagcagggtgaagaccgtgatcaaattgcagacctggtcatctccaaaatgaaccagaca
gtcccacgcactgcaagtccctctcctgtccgtcccacagctgcacagcctgtacagaaa
gctacatcctctcagcctatctcacaacccaaagtgccacaggctcagcaacgcccttct
ccacaaggtggcccacaacagacaccaaccggcactgccacccctcgccaaggatccccc
tcccagcagcgcccctctccccaaggccagcccccttccccaggccccaacacccagaac
ccccctgcccagacatcacagaaaggaaccaacccaggagctggggcccagcagcgtccc
ccaggtcaggggcagaaacccccctctggtcagggatccccccagcgatccatgagccag
gggggctcccctcaaaaccagaggccacagcagtcaggtccccagctgcagcagagcccc
cctcttggaggcatgggccagaagtccacagggggccagccccagcagaggccccagcag
aagccaggtcagcctgccaggcagcagtcccagggaggaggcccccagggcccccagcag
cagagggctccagcccagcaaggtcgccctggggcccccaccactcagcagccccgcctt
agtgcccagggccagggaggcccgggagggaaacctcctctgcagcagaagccccaaccc
ccacagaagcccaaccaggaccctcctgctatgggagccatccctccactgaacaaatcc
cagtctcttaccaatgccttcaacattccagaaactccaacgccacgggccagccttagc
caggatgaggtgaaggctgagaccatacgcaacctacgcaagtcttttgccagtctcttc
tcagactga
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