Oncorhynchus tshawytscha (Chinook salmon): 112248440
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Entry
112248440 CDS
T05605
Name
(RefSeq) serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
otw04261
Adrenergic signaling in cardiomyocytes
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112248440
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112248440
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
112248440
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112248440
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112248440
03036 Chromosome and associated proteins [BR:
otw03036
]
112248440
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
112248440
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
112248440
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
112248440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
112248440
NCBI-ProteinID:
XP_024273235
LinkDB
All DBs
Position
LG04:complement(26850365..26861278)
Genome browser
AA seq
447 aa
AA seq
DB search
MAGAGGGGNDVQWCFSQVKGAIDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEL
ESKNQPQCRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI
KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFQPMDLMVEASPRRVFANAHTYH
INSISVNSDCETYLSADDLRINLWNLEITDRSFNIVDIKPVNMEELTEVITAAEFHPNQC
NTFVYSSSKGTIRLCDMRASALCDQHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY
MMTRDYLSVKIWDLNMESRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGNDSVVMT
GSYNNFFRMFDRGYRQDVTLEASRESSKPRSVLKPRKVCTGGKRKKDEISVDSLDFNKKI
LHTAWHPQDNIIAVATTNNLYIFQDKL
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagctggcggcggaggcaatgatgtgcagtggtgtttctctcaagtcaaagga
gcgattgatgacgatgtggctgaagctgacatcatatccactgtggaattcaatcactct
ggggagctactagccactggggacaaggggggccgcgttgtgatctttcagcaggagcta
gagagcaagaaccagccacagtgccgtggggagtacaatgtttacagcaccttccagagc
cacgagcccgagttcgactacctgaagagccttgagatcgaggagaagatcaacaagatc
cggtggctgcctcagaagaacgctgcacagttcctcttgtccacaaatgataaaactata
aagctgtggaaaatcagtgaacgggacaagcgaccagaggggtacaacctcaaggaagag
gatgggcgctacagagaccccactaccgtcacaacactacgggtcccagtgtttcagccg
atggacctgatggttgaggccagccccaggcgggtgtttgctaatgcacacacttaccac
atcaactccatctcggtcaacagtgactgtgagacctacttgtctgctgatgaccttcgc
atcaatctctggaacctagagatcactgaccgcagctttaacattgtggacatcaagcca
gtcaacatggaggagctgacagaggtgattacagcagcagagttccatccaaaccagtgc
aacacatttgtctacagtagcagcaagggcaccatccgcctctgtgacatgagagcatca
gctctctgtgaccagcactccaaactgtttgaagagcctgaagatccaagcaatcgttcg
ttcttctctgagattatctcttccatctctgatgtcaagttcagccacagtgggcgctac
atgatgacccgggactacctgtctgtcaaaatctgggacctcaacatggagtcccgtcca
gtagagacttatcaggtccatgaatacctcaggagtaaactgtgctcactctatgagaac
gactgcatctttgataagtttgagtgctgctggaatggaaacgacagtgttgtgatgacg
ggctcatacaacaacttcttcaggatgtttgaccgaggctaccggcaggatgtgaccctg
gaggcgtctcgggaaagcagtaagcctcgttctgtgctcaagccccgcaaggtgtgcaca
ggtgggaagcgcaagaaggacgagatcagtgtagacagcctggactttaacaagaagatc
ctccacacggcctggcaccctcaggacaacatcatcgctgtggccactactaacaacctc
tatatatttcaggacaaactgtaa
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