Oncorhynchus tshawytscha (Chinook salmon): 112248478
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Entry
112248478 CDS
T05605
Name
(RefSeq) uncharacterized protein LOC112248478 isoform X1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112248478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112248478
Membrane trafficking [BR:
otw04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
112248478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
Motif
Other DBs
NCBI-GeneID:
112248478
NCBI-ProteinID:
XP_024273304
LinkDB
All DBs
Position
LG04:complement(28384284..28400573)
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AA seq
1661 aa
AA seq
DB search
MSLADQSQQWYPTSVQVTVFQARNLRIKGKNGTNDAYAIMQVAKDKFSTSVAEKCVAPVW
KEEATFDLPLFHHGNAERCTLYIIVMHRALVGLDKLLGRAVINLLDLHDNSARKKTDWYK
LLDKNGKEDKVRGEVMMDIQFMRNNLTASMFDLSMQDKPRSRIGKLKDKVRGKKKDSFSD
SASAIVPSFSQVVTDSEGEADSHSVCPESPGAKRKSKLKSLFAPKSNLQRNVSQSMSTLG
TLPEKNASLGGSRSSGLNVDSPDVKKKFKFLGHKRTGSNDSKVSTGPFSLLGRSKQKEDP
NSTCINGNHVYAEEVEPMSGSTLSLNSSGQGSVEDVRSHRQPSDAAVDSLKGAPVNTYRK
ESADRDRALLEQRRLQEEGEKRQAEEKRHNEEKQRVQLKVLQEEERKKQEEQERRFQEDE
ARRKKQQEEEEDRKRLAEERRQLKAGELQRLGEEQRQQEDAKKAEEQKQQEEASVTERLS
SLFGMIRKKEELQQSVANEVRPNPSPSHSTRDLEVPVPAPRHAANPFKDILLSPDPPIPF
EESPVDHQKGVCGTNTPSAAVFNSNRTAKVSAVKPRLESLKQPETPNSDSHRQQSPSLSC
AESPLSSVPSESPDMFSNLHSSLAPPKTRRSTSESPCSSTENLTAIGSSPIGSERKRQAP
LPPSPMELHGNPNAGSRSVSANCGSLVSIKEVEAKRPPLPLPDYDRLFPQKRHGVQGQTQ
WDHIIAEVNQRQQEYTSQLIGEEMSVDGPGLDSPAPPHNDKYLYLKERAAERLNQQQTQV
QEVQSSSWRRVGPNSLPALIPPPKPGAAAPPRLVMDSNKKQGQNTAQANPSVERHNAFVS
KVLGSTIPMAQSSNVPSVKPWEDARKVPKTSVALASEGHSVLPIEKPTRLTLTEVLVSSC
TDERKGLPNSLKEIPATKPRQRLTSKEPVRQVDSEPKAAESTTNVQQENRSEMSAASIDM
RVSSPVMAKNTEVTANSEKQPSPDSVESDNNKKQLERFMKETFSEPDPFPIAEVLPKYPW
AQPEQSHSGDDLFSGGPQKEDKLELGMKTDLDKHFTPNNSTDPSSSCNDSDSEKHPEEKP
EEPSPTFQRGFSQRKKERADFDPPAPPLTDKYSYLQERAAERLNQQRTQVQEVQSSSWRR
VGPNSSPALIPPPKPRRLEADSNKKQSQSTAQNNPSVERHNTFVSVSTNPMAQSRDVPSV
KPREDARKVLNTSVSSANDGKSVLRLEKPNRPTQVLVSSSTDEPKGLPNTLKEIPSAKPR
QSLVSSGSAFSLLTSAEHTTVQQENRSEMRAVSTPDIMESSPTMAKATDSVESDIHKKQL
ELIMKDTFDDPFPIAEILPKDPWAQPEQSHSGDDLFSVGPQKDDKLEQRLTNDDLVKLFV
PNNPTDLFSSCNDRYSEKHPEEEKPEGPSPAFQRLFSQRKNKRAAPQPPANLSNKGAMGK
GELVKQDPSPRENETIRLATTGSVKLEPQAKNTRQRNLYSREKVETQARKEKWTADPFTF
SRMSSDLTSPEPPQSVGEPKPQAGAEGKTLLRAWVSTSEVQPLTVLSSNGDRPDLTPLRP
HPVKPMSSMESHALNTPVVREMKTYDSSLGNMKAPGKVESGPYTQLTQEELITLVVKQQT
ELSKKDFKIVELEEYIDNLLVRVIEEKPSILQGLNSPKQAL
NT seq
4986 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggctgaccaaagtcagcagtggtatcccacaagcgtgcaggtgaccgtgttc
caagccaggaatttgaggatcaaaggaaagaatggaaccaacgatgcctatgccatcatg
caggtggccaaagacaagttttctacctcggttgccgaaaaatgtgtcgcaccggtatgg
aaggaagaggcaacgtttgacctgccactgttccaccatggcaatgctgaacgctgcaca
ctatacatcatagtaatgcacagagctctggtgggactggacaagctcctgggacgagct
gtgatcaacctacttgatctacacgataacagcgcccgcaaaaagaccgattggtacaaa
ctgctggataagaatgggaaggaggacaaggtcagaggggaagtgatgatggacatccag
ttcatgagaaacaacttaacagccagcatgtttgacctttccatgcaagacaaaccacgc
tcccgcatcggaaagctcaaggacaaagtgcgtgggaaaaaaaaggacagcttctctgac
tctgcctctgcaatagtgccctctttcagccaggtagtcactgacagtgagggagaggct
gactcccactcagtgtgcccagagtcccctggggccaagagaaaatccaagctcaagtcc
ctctttgcccctaaatccaacctgcagcgcaatgtctcccagtccatgtccacactgggc
actcttcctgagaagaacgcatcccttggtggcagtcgctcttctggcctcaatgtggat
tcacctgatgttaaaaagaagttcaagttcctgggccacaagcgcacaggcagcaatgac
agcaaagtgtctacaggacctttttctcttctgggcagatccaagcagaaagaagaccca
aacagcacgtgcatcaacggcaatcatgtgtatgcagaggaggtagaacccatgtctggg
tccaccctcagccttaacagctctggtcagggctcagtggaggatgtacgaagccacagg
caaccttctgacgccgccgtagactccctcaagggcgcccctgtcaacacctacagaaag
gagtctgcagatagggatagggctctgctggagcaaaggcgccttcaggaagagggagag
aagaggcaggctgaggagaagaggcataatgaggagaaacaaagagtgcagctcaaggta
ctgcaggaggaggaacgcaagaaacaggaggagcaggagagaaggttccaggaggatgag
gcaaggaggaagaagcagcaggaagaggaagaggaccggaagcggctagcggaagaaaga
aggcagctgaaggcgggtgagcttcagaggctgggggaggagcagaggcagcaggaggat
gccaagaaggcagaggagcagaaacaacaggaggaggcctctgtgactgagaggctgtcc
tctctgtttggtatgatcaggaagaaggaagagctgcagcagagtgtcgccaatgaggtg
aggcccaacccatctcccagtcacagcaccagagatttggaggtccctgttcctgcccct
cgccatgctgccaacccattcaaggatattctcctcagtccagaccctccaatcccattt
gaggagagcccggtggaccaccagaagggtgtttgcggcaccaacaccccgagcgctgca
gtcttcaactccaaccgcactgccaaggtgtctgcagtcaagcccagattggagtctctg
aagcagcctgaaacccccaactcagactcccataggcaacaatctccctccctgtcctgc
gccgaatcccctctctctagcgtcccttctgagtctcctgatatgttctcaaaccttcac
tcctccctggctccacctaagacacggaggagcacctctgagtccccctgcagcagcact
gagaacctgactgccataggatcttcccctatcggatctgagaggaagcggcaagctcct
ctgccccccagcccaatggaactgcatggaaatcccaatgcaggctccagaagtgtgtct
gctaattgtggctctcttgtgtcaattaaggaggttgaggccaaaagacctcctctacct
cttcctgactatgatcgcctgttcccacagaagaggcatggagtacaaggacagactcaa
tgggaccatatcattgcagaagtgaatcagagacagcaggaatacacatctcagctcatt
ggagaagagatgagtgttgatggcccaggcctcgactccccagcacctccacacaatgac
aaatatttgtacttgaaggagagggcagcagaacgccttaaccagcaacagacacaagtt
caggaagttcaatcttcatcttggaggagagtggggcccaacagtttgccagcgctcatc
ccccctcccaaacctggagctgcagctccccctagactagtgatggactcaaacaaaaag
caaggccagaacactgcacaggctaatccatctgttgaaagacacaatgccttcgtctcc
aaagtcttgggctctaccattcctatggctcaaagcagcaacgtaccctcagtgaaacct
tgggaggatgcaaggaaggtgcctaaaacatcagttgctttagccagtgaaggccattct
gttctcccaatagaaaagcctactagacttacattaacagaagttttggtgtcaagttgt
acagatgaacgtaaaggactgccaaactctctcaaagagatccccgcaaccaaacccaga
caaaggttaaccagcaaagagccagtgagacaagtggattctgagccaaaagcagcagag
tctactaccaatgtacagcaggagaacagatcagaaatgagtgcagcctccatagacatg
agagtgagtagtccagtcatggcaaagaacacagaggtaactgctaacagtgaaaagcaa
ccctcacctgattctgtagaaagcgacaataacaaaaaacaactggaacgctttatgaaa
gagacattttctgaacctgacccttttcccattgcggaggtcctgcctaaatacccatgg
gctcaaccagagcagagccacagtggagatgacctgttctctggaggaccacagaaagag
gacaagcttgaactgggaatgaaaactgacttggataaacattttacgccaaacaattca
acagatccgtcctccagctgtaatgacagtgactcagaaaagcatccagaggaaaaacca
gaagagcccagtcctacttttcaaaggggattttcacaaaggaaaaaggaacgcgcagac
ttcgaccccccagcacctccacttactgacaaatattcctacttgcaggagagggcagca
gaacgcctaaaccagcaacggacacaagttcaggaagttcaatcttcatcttggaggaga
gtggggcccaacagttcaccagcgcttatcccccctcccaaaccccgtagactagaggcc
gactcaaacaaaaagcaaagccagagcactgcacagaataatccatctgttgaaagacac
aacaccttcgtctcagtctctacaaatcctatggctcagagcagagatgtaccctcagtg
aaacctcgggaagatgcaaggaaggtgcttaacacatctgtttcgtcagccaatgatggc
aaatctgttctccgactagaaaagcctaatagacctacacaagttttggtgtcaagttct
acagatgaacctaaaggactgccaaacactctcaaagagatcccctcagccaaacccaga
caaagtttagtcagctcaggatctgctttctctttgctaacatcagcagagcataccact
gtacagcaggagaacagatctgagatgagggcagtctcaaccccggacatcatggaaagt
agtccaacgatggctaaagctactgactctgtagaaagcgacattcacaaaaaacaactg
gaactcattatgaaagacacgtttgatgaccctttccccattgctgagatcctgcctaaa
gacccatgggctcaaccagagcagagccacagtggcgatgacttgttctctgtaggacca
cagaaagacgacaagcttgaacagagactgacaaatgacgatttggttaagctttttgtg
ccaaacaacccaaccgatctgttctccagttgtaatgacaggtactcagaaaaacatcca
gaggaagaaaaaccagaagggcccagtcctgcttttcaaaggttattttctcaaaggaaa
aataaacgagcagcacctcagcctccagctaatttgagcaataaaggagccatgggaaag
ggtgagctggttaaacaagacccttcacccagagaaaacgagacaatcaggttagccact
acgggatctgtcaaacttgagccgcaagccaaaaatactagacagagaaatctctatagt
agagaaaaggtagaaacccaagccaggaaagagaagtggacagcagacccttttaccttc
tcccgcatgtcttctgacctgacttctcctgagcctccccagtcagtaggtgagcccaaa
ccccaggcaggggctgagggtaagaccctgctacgggcctgggtctcaacctctgaggtg
cagccactcactgttctgagtagcaatggagatcggccagacttaacaccactcaggcct
cacccagtgaagcccatgagctccatggagagccatgctctcaacaccccagtggtgaga
gagatgaagacctatgacagctcactgggaaatatgaaggcaccaggtaaggtggagagt
gggccatacacccagctgacccaggaggagctgattaccctggtggtgaagcagcagacg
gagctctccaagaaggacttcaagatcgttgagttggaggagtacatagacaacctgctg
gtgcgtgtcatcgaggagaagcccagcatcctgcaaggcctcaactctcccaagcaggcc
ctgtga
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