Oncorhynchus tshawytscha (Chinook salmon): 112248537
Help
Entry
112248537 CDS
T05605
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3 isoform X1
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112248537
03036 Chromosome and associated proteins [BR:
otw03036
]
112248537
Spliceosome [BR:
otw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
112248537
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
112248537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
HAT_PRP39_N
LSM_int_assoc
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
RRM_occluded
HAT_Syf1_M
FAT
Lsm_interact
Motif
Other DBs
NCBI-GeneID:
112248537
NCBI-ProteinID:
XP_024273428
LinkDB
All DBs
Position
LG04:complement(31812328..31831001)
Genome browser
AA seq
958 aa
AA seq
DB search
MAATGDADETQLQEMEEEAVMENEMDSDEEEGLGIENSDDETDNSSEDEKENEAEIQRLE
EQLSINAFDYNCHVDLIKLLRQEGELPRLRKARQKMSELFPLTEEIWLDWLKDEIHLTEE
EPNREKVYELFETAMKDYICPEIWVEYAQYSIGGMGLPGGIEKVRSIFERALTAVGLHMT
KGATVWEAYREFENAILATVQPPPGSVPTREQQELLNAQLERIHTLFRRQLSIPLMDMDG
TYAEYEEWSDQGVSDTVSQKYKGALQEMEKSKPYEETLMIAEPPKLAEYQTYIDYEQKEG
DPARIQIIFERALSENCLVPDMWAKYTKYLDRQLKIKDLVLSSHDRAVRNCPWTMGLWKN
YLLALERHGADHHTISDVFERALNAGFIQATDYVNIWEAYLDYLRRRVDFSKGESTLTLE
SSRELEELRAAFTRSLDYMKQDVEERFSESGDPSCTIMQVWAKIEALHCKNMQKARELWD
SIMTKGNAKFANMWLEYYNLERSYGDALHCRKALHRAVQCTSDYPEHVCEVLLTFERVEG
SLEDWDAAVQKTETRLNRVNEQRAKVTEKEAHVARQVEEKTEQRRRAKADKKNQKKGQKG
SRPGEKRKAEDKDYEDEWGEESEQPPKRHRREGDQGFRGGCGGAEEFMGTESGLFGRRAP
PGRRQEPPGTKRGQQVAPATVWKTQEDDPELRKDDCSVFISNLAFTMEDPEKRLKQLFEP
CGPVQSVRPVYAAKGFRGYCYVQFEGKASVVEALKMDRQEVEGRPMFVSPCVDKNKNPDF
KVFKYNTNLEKHKIFISGLPFSCTKEQLEELCKVHGTIKDIRLVTNRSGKPKGLAYVEFG
DEAQASQAVLKLDGTVLQEHTLSVAISNPPRRNTADKPGFSRPMGAMMPRSMVYGSRGKG
RTQLSLLPRSLHRQTGSESKAENGTAPKPTGGASGDAGIKAQTKPLSNSDFAKMLFKK
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaacgggggacgcagatgagactcagttgcaagagatggaggaagaggcagtg
atggaaaatgaaatggattcagatgaagaggagggtttgggaatagaaaattccgacgat
gaaacagacaattcatcagaagacgaaaaagagaatgaagccgaaattcagcgtttggag
gagcagctgtccatcaatgcttttgattacaactgtcatgtggacctcataaaactcctg
aggcaggagggggagctgcctcggctgcgtaaggcaaggcagaagatgagtgagctcttc
ccactcactgaagagatttggctggactggctcaaggatgagatccacctaacagaagag
gagccgaaccgggagaaagtctatgagctctttgagacggctatgaaagattatatctgc
cctgaaatctgggtggaatatgcccaatactctatcgggggcatgggactgcctggtggg
atcgagaaggtgaggtccatcttcgagagagccctgacagctgtggggctgcacatgacc
aagggggcgacagtgtgggaggcctacagggagtttgagaacgccatactggcaacagtt
cagccgccccctggcagcgttcccacccgcgagcagcaggagcttctgaacgctcagctc
gagcgcatccacactctgttccgccgccagctgtccatccccttaatggacatggatgga
acatatgcagagtatgaggagtggtctgaccagggagtgtctgatacagtctcccagaag
tacaagggggccctgcaagaaatggagaagagcaagccttatgaggagactctgatgata
gccgagccacccaagctggcagagtatcagacctacattgactatgagcaaaaggagggt
gacccagcacggatccagatcatctttgagcgggcattgtcagaaaactgcctggtacca
gacatgtgggcaaagtacaccaaatacctggaccgccaactgaagatcaaagacctggtc
ctgtcctctcacgaccgtgcggtcaggaactgcccctggaccatgggcctgtggaagaac
tacctgctggccctggagaggcatggggctgaccaccacactatctcagatgtttttgaa
agggccctgaatgctggtttcatacaagccacagattacgtgaatatctgggaagcatac
cttgattacctgaggcggcgcgtcgatttcagtaaaggtgaaagcaccttaacattggag
tcgagcagagagctggaggagctgcgggcagccttcacccggtccctggactatatgaaa
caggatgtggaagagaggtttagtgaaagtggagacccctcttgtactatcatgcaggtc
tgggcaaagatagaggccttgcattgtaagaacatgcagaaggccagagaactgtgggac
agcatcatgaccaaagggaacgccaaattcgccaacatgtggttggagtactataacctg
gagaggtcgtacggagatgctctccactgcaggaaagccctccacagggccgtccagtgt
acctccgactacccagagcatgtgtgcgaggtcctgctcacctttgagagggttgagggt
tctctggaggactgggatgcagcggtgcagaagactgagacacggctgaacagagtcaat
gagcagagggccaaggtgacagagaaagaggcccatgtggctcgacaggtggaggagaag
actgaacagcggcggagggccaaggcagacaagaagaaccagaagaagggccagaaaggc
agcaggcctggagagaagcggaaggcagaggacaaggattacgaggatgagtggggagag
gaatcggagcaacctccaaagaggcaccgaagggagggcgaccaaggcttcaggggggga
tgtggtggtgctgaggagttcatggggacagagagtgggctgtttgggaggagagccccc
cctggccgcagacaggaaccccctggtactaagaggggccagcaggtggcgccagccacc
gtatggaagacccaggaagatgaccccgagctacgcaaggacgactgcagtgtgtttatc
agtaacctggccttcaccatggaggatccagagaagaggctgaagcagttgtttgagccc
tgtggtcctgtccagtcagtgcgccccgtctatgctgccaagggcttcagagggtactgc
tacgtacagtttgagggcaaggcgtctgtggtcgaggccctgaagatggaccggcaagag
gtggaaggcagacccatgttcgtatcaccctgtgtggataaaaacaagaaccctgatttt
aaggtgtttaagtacaacacaaacctagagaaacacaagatctttatctcgggcctgccc
ttttcctgcaccaaggagcagctagaggagctgtgcaaggttcatggcaccattaaagac
atccgcttggtcaccaaccgctcaggcaaacccaagggtctggcgtacgtggagtttggg
gatgaggctcaggcctcccaggccgtgctgaagttggatggcacagtactacaggaacac
acactctctgttgccattagcaacccgcctcgcagaaacactgccgacaagcctggcttc
agcagacccatgggagccatgatgccccggtctatggtctatggatcgaggggaaaaggg
cgcacccagctctcattactccctcgttcactacatcggcagactggatcagaaagtaaa
gcagagaatgggactgcacctaaacccacagggggcgcatctggagatgctgggattaaa
gcacaaaccaagcccttgtctaattcagactttgctaaaatgcttttcaaaaagtga
DBGET
integrated database retrieval system
