Oncorhynchus tshawytscha (Chinook salmon): 112248557
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Entry
112248557 CDS
T05605
Symbol
tfip11
Name
(RefSeq) tuftelin-interacting protein 11
KO
K13103
tuftelin-interacting protein 11
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112248557 (tfip11)
Spliceosome [BR:
otw03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
112248557 (tfip11)
Other components
Complex C specific factors
112248557 (tfip11)
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Ortholog
Paralog
GFIT
Motif
Pfam:
GCFC
TIP_N
G-patch
G-patch_2
SARAF
Motif
Other DBs
NCBI-GeneID:
112248557
NCBI-ProteinID:
XP_024273464
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Position
LG04:32356813..32364538
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AA seq
844 aa
AA seq
DB search
MSMSHLYGRQGEEEDEGVEVEKFEVTEWDLANEFNPERRRHRQTKEEAVYGIWAERGDSD
DERPSFGGKRSKDYSAPVSFVSAGLRKSAAEEKQQQQQQQIDGGSDDSDNDNSPPAQPPP
RDTAPKKLQTGGHFRGNSQSQRTGFAAGIRAGGDLGTWEKHTKGIGQKLLQKMGYVPGKG
LGKNAQGILNPIEAKLRKGKGAVGAYGNERTKQSLQDFPVVDSEEEEEKEFQRELGQWRR
DPAGGGGKKKPKYSYRTVEELKAKGKLAGRTTQTPAGELAQVKVIDMTGREQKVYYSYSQ
MTNKLSVPEEAPLSVATREQKTSGFALPELEHNLQLLIDLTEQDILQSSRRLQHERDVVV
TLSHESSGLQTRLGTERDAIQRLEAVLQLVDRFQSGETAPGVGPSLQECAGVFETLQSEF
YEEYKTLGLGDLAAAVVHPLLREKLRTWDPLKDSSYGLEEVGQWRAILESDQLHHANAPE
AHMDPYHRLLWEVWIPVLRVCVSGWQPRMVGPMVDCVEVWAPLLPLWILNHLLEQLLFPR
LQREVDSWNPLTDTVPIHSWLHPWLPLLQSRLEPLYPPIRSKLANALQRWHPSDGSARLI
LQPWRDVFTPGAWEAFMVKNIIPKLALCLGELVINPHQQQMEPFNWVLDWEGMLSPSSLV
SLLDKHFFSKWLQVLCSWLSNSPNYEEITKWYLGWKSIFSDAVLAQPLVKDKFNEALDIM
NRAVSSGLGGGYMQPGARENIAYLTHTERRKDFQYEALQERRDAESVAQRGIGASLPTNF
KDLIQTKAEENNIVFMPLVAKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLI
DMAK
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgtcccacctgtacggacggcagggagaggaggaggatgagggggtggaggta
gagaagtttgaggtgacagaatgggacctggccaatgagtttaacccggagcgtcgcaga
cacagacagaccaaagaggaggccgtctatggcatctgggcagagaggggagactccgac
gatgagagacccagcttcggagggaagaggtctaaggactactctgcccctgtgagtttt
gtgagtgctgggctacgcaagtctgcagcagaggagaagcaacaacaacaacagcagcag
atagatggagggtcagatgactctgacaatgacaactctccccctgcccaacccccaccc
cgcgacactgcacctaagaaactgcagacgggcggtcatttccgtggcaatagccagtcc
cagaggacggggtttgcggccggtatccgtgctggaggagacttgggcacttgggagaaa
cacaccaaggggattggccagaaactcctccagaagatgggctatgtaccagggaaagga
ctggggaaaaacgcccagggtattttgaatcccatcgaggcaaagcttcggaagggaaag
ggggcggtgggcgcctacggcaacgagagaaccaaacagtcactacaggacttccctgtg
gttgactccgaggaggaggaggagaaggagttccagagggaactaggtcagtggcgtagg
gaccctgcaggtggtggagggaagaagaaaccaaagtattcctacaggactgtagaggag
ctgaaggctaaaggcaagctggctggacggaccacacagacacccgctggagaactggct
caggtcaaggtaatagatatgacaggcagggaacagaaggtgtattacagctacagtcag
atgactaacaaactcagtgtaccagaggaggctccactgagcgtggctacacgtgagcag
aagacgtctggctttgccctgccagagctggaacacaacctgcaactactgatcgacctg
acggaacaagacatactacagtcctcacggcgtctgcagcatgagcgtgacgtggtggtg
actctaagccacgagagctccggtctgcagacgaggctcgggacggaacgggatgccatc
cagaggctagaggcagtactgcagctggtggatcgctttcagagcggggagactgcaccc
ggggtaggacccagcctgcaggagtgtgctggtgtttttgagactctacagagtgaattc
tatgaggagtacaagactctaggtttgggagatctggctgcagctgtagtacatccacta
ctcagagagaaactacgcacatgggatcctctcaaggacagttcatatggtctggaggag
gtgggtcagtggcgagccatcctggagtctgatcagcttcaccacgccaacgcccctgaa
gcacacatggacccctaccacaggctgctgtgggaggtgtggatccctgtgctgcgagtg
tgtgtgtcggggtggcagcctcgtatggtaggacccatggtggactgtgtggaggtctgg
gcccctctgctgcccctctggatactaaaccacctcctggaacaactcctcttccccagg
ctgcagagagaggtggatagctggaaccccctgaccgacacagtgcccatccactcctgg
ctccacccctggctgcctctgctccaatcacggctggagcctctctacccgcccatccgc
agtaaactggccaatgcgctgcagcgctggcacccgagtgacggctccgcccgcctcatc
ctccaaccatggagagacgtgttcacgcccggtgcctgggaggccttcatggtcaaaaac
ataatccctaaactagctctgtgtctgggggagctggtaataaatcctcaccagcagcag
atggagccgttcaattgggtgttggactgggagggcatgctgtctccctccagcctcgta
tcactgctggacaaacacttcttctccaagtggctacaggtgctgtgttcgtggctcagt
aacagtcctaactatgaggagattacaaagtggtacctgggctggaagtccatattcagt
gatgctgttctggctcagccactcgttaaggacaagttcaacgaagctctggacatcatg
aaccgcgctgtctcctctggccttggtggggggtacatgcagcctggtgcccgtgagaac
atagcatacctcacacacacagagcgtcgtaaagacttccagtacgaggctctgcaggag
cgccgggatgctgagagcgtggcgcagcgaggcatcggtgccagcctgcccaccaacttc
aaagacctgatccagaccaaggctgaggagaacaacattgtcttcatgccgctggttgcc
aaacgccacgagggcaaacagctgtacacctttggacgtatcgtcatctacatagacaga
ggagtggtcttcgtacagggagagaagacctgggtccctacgtccctacagagtctcata
gatatggccaagtga
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