Oncorhynchus tshawytscha (Chinook salmon): 112248562
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Entry
112248562 CDS
T05605
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04137
Mitophagy - animal
otw04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112248562
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
112248562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112248562
03009 Ribosome biogenesis [BR:
otw03009
]
112248562
04131 Membrane trafficking [BR:
otw04131
]
112248562
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112248562
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
112248562
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
112248562
Membrane trafficking [BR:
otw04131
]
SNARE
SNARE associated proteins
Others
112248562
Autophagy
Aggrephagy
Other aggrephagy associated proteins
112248562
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112248562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
TIP49
AAA_22
AAA_14
RNA_helicase
AAA_28
Vps4_C
nSTAND3
Parvo_NS1
AAA_18
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_7
ATPase
Bac_DnaA
DUF815
ABC_tran
AAA_24
NB-ARC
ResIII
TsaE
Viral_helicase1
Zeta_toxin
Sigma54_activat
NACHT
SLFN-g3_helicase
bpMoxR
KAP_NTPase
UFD1
Zot
Motif
Other DBs
NCBI-GeneID:
112248562
NCBI-ProteinID:
XP_024273471
LinkDB
All DBs
Position
LG04:32414877..32429520
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKNDDLSTAILKQKTRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLMK
GKKRRESVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPNPYCIVAPDT
VIHCEGEPIRREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDAALRRF
GRFDKEVDIGIPDATGRLEILQIHTKNMKLNDDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPNITWGDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRINILKAN
LRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRECIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSNAAGG
SGPSQGTGGTGGGPVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgggaggagaatccaaaaatgatgacctttccactgcgattctgaagcagaag
accagaccaaacagattgattgtcgatgaatccatcaatgaggacaacagtgtggtttct
ctctctcaggcaaagatggatgagctgcagctgttccgtggcgacacagtgctgatgaag
gggaagaagcgcagggagtctgtgtgtattgtcctgtccgacgacacctgctctgatgag
aaggtccgcatgaaccgtgtggtccgcaacaatctccgtgtccgtctgggggatgtcatc
agtatccagccgtgtcctgatgtaaagtatgggaagaggattcatgtgctgcctattgat
gacacagtcgaagggatcactggcaacctgtttgaggtctacctcaaaccctatttccta
gaggcctacaggcccatccgcaagggtgatatcttcctggttcgggggggtatgcgtgcg
gtggagttcaaggtggtagagaccgaccccaacccctactgcatcgtcgccccagataca
gtcatccactgcgagggagagcctatcaggagagaggatgaggaggagtccctgaatgag
gtgggctatgatgatatcggaggagtgaggaagcagctagctcagatcaaggagatggtt
gagctgcctctcagacaccctgcactgttcaaggctataggagtcaagcccccccgtggt
atcctgctatacggacctcccggtacaggaaagaccctgattgccagagctgttgctaac
gagaccggagccttcttcttcctcatcaacggtcctgagattatgagtaagctggctggg
gagagtgagagcaacctgaggaaggcctttgaggaggctgagaagaactctcctgccatc
atcttcattgatgaactggacgctatcgctcccaagagagagaagactcatggagaagtg
gagaggcgtatcgtgtctcagctgctgaccctgatggacgggctgaagcagagagctcat
gtcatcgtcatggcagccaccaacagaccaaacagcatagatgctgcacttagaagattt
gggcgttttgacaaggaggtggacattggtatccccgatgctacaggcagactggagatc
ctgcagatccacaccaagaacatgaaactgaatgacgatgttgaccttgagcaggtggct
aatgagacccacggccacgtgggtgctgatctggctgccctgtgctcagaggctgctctc
caggccatcaggaagaagatggacctcatcgacctggaggacgagaccatcgatgcggag
gtcatgaactcccttgcagttaccatggatgactttaggtgggctctaagccagagtaac
ccatcagctctgagggagacagtggtggaggttcctaacatcacctggggggacatcgga
ggactggaagacgttaagcgggagctgcaggagctggtgcaatacccagtggagcaccca
gataagttcctgaagttcggtatgactccttcaaagggagtgttattctacgggcctccg
ggttgcggtaagaccctgctggccaaggccattgccaacgagtgccaggccaacttcatc
tccattaaaggacctgagcttctcaccatgtggtttggagagtcagaggctaacgtcagg
gagatctttgacaaggctcgccaggcagccccatgtgtgttgttctttgacgagctggac
tccatagcaaaggcccgtggaggtaatgtgggagacggtggcggtgcggccgaccgtgtc
atcaaccagatcctgactgagatggacggcatgtccagcaagaagaacgtcttcatcatt
ggagccaccaatcgccctgacatcatcgaccctgccatcctccgacccggccgcctggac
cagctcatatacatccctttgcctgacgagaagagcaggatcaatattctcaaggctaac
ctccggaagagccccattagcaaggatgttgatctggacttcctggctaagatgaccaat
gggttctcgggtgctgaccttacagagatctgccagcgggcctgtaagctggctatcaga
gagtgcattgagaacgagattcgccgagagagggagaggcagaccaacccctctgctatg
gaagtggaggaagacgaccctgtgcctgagatcaggaaggaccactttgaggaggccatg
cgattcgcccgccgctctgtcagtgacaatgacatccgcaaatacgagatgtttgcgcag
acactgcagcagagccgaggatttggcagcttcaggttcccctccaatgctgcagggggc
agcggtcccagccagggtactgggggcactggtggggggccagtgtttaacgaggataat
gatgatgacctgtacggatag
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