Oncorhynchus tshawytscha (Chinook salmon): 112248575
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Entry
112248575 CDS
T05605
Name
(RefSeq) thrombospondin-4-B
KO
K04659
thrombospondin 2/3/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112248575
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112248575
09144 Cellular community - eukaryotes
04510 Focal adhesion
112248575
09142 Cell motility
04820 Cytoskeleton in muscle cells
112248575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112248575
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112248575
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112248575
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112248575
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112248575
Exosomal proteins of colorectal cancer cells
112248575
Exosomal proteins of bladder cancer cells
112248575
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112248575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_CA
COMP
EGF_3
EGF
cEGF
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
112248575
NCBI-ProteinID:
XP_024273488
LinkDB
All DBs
Position
LG04:complement(32893891..32906021)
Genome browser
AA seq
947 aa
AA seq
DB search
MGVWIRKVVLSLLMLQLATTVTAQGIVYDLLVSPDCLPDLTQGGLKNKGLDEAFLLSSFR
LHSKSPSHLYSIINPRDNSKYLEFTLQAKLNKVTIRYQKTDGRAGTTSFSHPSLADGKEH
HVMIHASGLQRGPGRMAVYVDCRLAHTVDELPAAFGSLTPGHNKVALRTLQPTGQDELTD
LKLVIEDTLDNVATLQDCSIQQSESLGTIQILGLQAGGQDPSQMLELHKMMSEMKDLLLQ
QIKETTFLRNTISECLACGLGDNMASGPGTGPRSGPSKCSPGMCFNQDMCIPAEGGRFTC
APCPDGYTGDGVHCDDVNECQFNPCFPGVRCVNTAPGFRCERCPLGYTGLEINGVGVSYA
QSHKQVCDDIDECQGPPDNGGCTANSHCHNTRGSFRCGECKSGFSGDQVSGCSGGRLCGN
GQPNPCDSNAQCVVERDGSVSCECDIGWAGNGYVCGKDTDIDAYPDDKLRCRDNNCKKDN
CMFVPNSGQEDADRDGLGDACDDDADSDGIVNIEDNCWLHPNVNQKNSDKDLHGDVCDNC
LTTENPDQRDTDKDGLGDNCDDDMDGDGLKNILDNCQRVANLDQRDRDNDGVGDACDSCP
DMVNPNQSDVDDDLVGDTCDTNIDSDGDGHQNTKDNCPTVINSSQLDTDKDGQGDECDDD
DDNDGILDQADNCRLVVNPDQTDEDNDGVGDACAGDFDQDKVIDRIDNCPENAEVTLTDF
RAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTV
TDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQAVPFRAVAEPGIQLKAVKSKTGPGEYLR
NSLWHTGDTNDQVRLLWKDKRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGPNLVADSGV
KIDNSMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDYQEYSAQNTE
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgtggatcagaaaagtggtcctctctctgctgatgctacaactggccacgact
gtcacagcacaaggcattgtgtacgacctgctggtgtctccagactgcctgcctgacctg
acgcagggagggctgaagaataaaggtctggatgaggccttcctcctctcctccttcagg
ctccatagcaagtccccctctcatctctacagcatcatcaaccccagggacaacagcaag
tacctggagttcaccctgcaggccaaactcaacaaggtgacgatccgttaccagaagact
gatggtagggctggcaccaccagctttagccacccctctctggcggacggcaaggagcat
catgtgatgatccatgccagcggtctgcagagaggaccaggtcgtatggcggtctacgta
gactgtagactagctcacactgtggacgagctgcctgctgccttcgggtcgctgacacct
ggacacaacaaggtggcgcttaggaccctgcagcccaccgggcaggatgagttgacggac
ctgaaactggtgatagaggacacgttagataacgtcgctacgctccaggactgcagcata
cagcagagcgagtctctgggtactattcagatactgggcctccaggcaggcggacaggat
ccgtctcagatgttagagctccacaagatgatgtcagagatgaaggacctgctcctccag
cagattaaggagaccacattcctcagaaacaccatctcagagtgtctggcatgtggtctg
ggtgacaacatggcgtcaggcccaggtacaggtccacggtcaggcccgtccaagtgtagt
ccaggtatgtgtttcaatcaggacatgtgtatcccggccgagggaggacgcttcacctgc
gccccctgccccgacggttacactggagacggagttcactgtgatgacgtgaacgagtgc
cagtttaacccctgcttccccggcgtgaggtgtgtgaacacagctcctgggttccgctgt
gagagatgccctctgggatacactggtcttgagatcaacggagtgggagtgtcctacgca
cagtcacacaaacaggtgtgtgatgacatagatgaatgccagggtcctccagacaacgga
ggctgcaccgccaactctcactgccacaacaccaggggttcattccgttgtggggagtgt
aagagtggcttctctggggaccaggtgagcggctgcagtggtgggaggctctgtgggaat
ggccagcccaacccctgtgacagcaatgcacagtgtgtagttgagagagacgggagtgtt
agctgcgagtgtgacatagggtgggcaggtaatggctatgtgtgtgggaaggacacagac
atcgatgcttacccagacgacaagctaaggtgcagggacaacaactgtaagaaggacaac
tgtatgtttgttcctaactctggccaagaggacgcagacagggacgggctcggggacgcc
tgtgatgatgacgctgatagcgacggcatcgttaacatagaggataactgttggctgcat
cctaacgtgaaccagaagaacagcgataaggatctccatggtgacgtgtgtgacaactgc
ttgacgacggagaaccctgatcaacgagacactgacaaggacgggctaggcgataactgt
gacgatgacatggatggagacggcctgaagaacattctggataactgccagcgtgtggcc
aacctagaccagagggacagagacaacgatggggtgggagacgcctgtgacagctgtcct
gacatggtcaaccccaaccagtcagatgttgatgatgatcttgtaggagacacatgtgac
accaacatagacagtgatggggacggtcaccagaacactaaggacaactgtcctacagtc
atcaactcctcccagctggacacagataaggacggacagggagacgagtgtgacgatgac
gatgacaacgacggtatcctggaccaagcagacaactgcagactggtggtcaaccctgac
cagacagatgaggacaatgacggcgtgggtgatgcgtgtgcaggggactttgaccaggac
aaggtgattgacaggatagacaactgtccagagaatgctgaggtcaccctgacagacttc
agagcctatcagacggtagtactggaccctgagggtgacgcccagattgatcccaactgg
gtggttctcaaccagggtatggagatagtccagactatgaactctgaccctggcctcgct
gtaggctacacagcgttcagtggggtggactttgaggggacgttccacgtgaacacggtg
actgatgatgactatgcaggcttcatcttcggctaccaggactcctcctccttctacgtg
gtcatgtggaaacagactgagcagacctactggcaggctgtacccttcagagctgtggct
gagcctggcatacagctcaaggcagtgaagtctaagacaggtccaggggagtatctgagg
aactccctgtggcatacaggagacaccaacgaccaggtacgcctgctgtggaaggacaag
aggaacgtgggttggaaggacaaggtgtcctaccgctggtatctacagcacagaccacag
gttggatacatcagggcgcgtttctatgagggtcccaacctggtagcagactctggggtg
aagatagacaacagtatgcgaggagggagactgggagtcttctgtttctcccaggaaaac
atcatctggtccaacctcaagtaccgctgcaatgacaccatccctgaagattaccaggag
tacagtgcccagaacactgaataa
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