Oncorhynchus tshawytscha (Chinook salmon): 112248792
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Entry
112248792 CDS
T05605
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112248792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112248792
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112248792
mRNA degradation factors
5'-3' decay
Lsm complex
112248792
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
112248792
NCBI-ProteinID:
XP_024273878
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Position
LG04:complement(40521634..40523983)
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIDDIDKKHLVLLRDGRTLIGFLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEIDMDKPCDTVLQQVSIEEILEEQRLQQQAKQETEKAKVTALKDR
GLSIPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactacatgccagggaccgcgagtctcattgatgacatagacaaaaagcatcttgta
cttcttcgcgatggaagaacgctaattgggtttcttagaagcatcgaccagtttgccaac
ctagttttccatcaaacagtcgagcgcatccatgtgggcaagaagtttggggacatcccc
agaggaatcttcattgtgagaggagagaacgttgttttgcttggcgaaatagacatggat
aagccgtgtgacacagtcttgcagcaggtttctatagaggagatcctagaggagcagcga
ttgcaacagcaagccaagcaggagacagagaaagccaaggtgaccgcactgaaggacaga
ggcctatccatccccaaggcagataatcttgatgaatactga
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