Oncorhynchus tshawytscha (Chinook salmon): 112248954
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Entry
112248954 CDS
T05605
Symbol
lrp4
Name
(RefSeq) low-density lipoprotein receptor-related protein 4 isoform X2
KO
K20051
low-density lipoprotein receptor-related protein 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112248954 (lrp4)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112248954 (lrp4)
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
112248954 (lrp4)
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Laminin domain-containing proteins
Laminin EGF-like domain-containing proteins
112248954 (lrp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
Ldl_recept_a
FXa_inhibition
SGL
cEGF
DUF5050
EGF_CA
UPF0113
Motif
Other DBs
NCBI-GeneID:
112248954
NCBI-ProteinID:
XP_024274194
LinkDB
All DBs
Position
LG04:complement(49648120..49874332)
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AA seq
1901 aa
AA seq
DB search
MQVSVVLCSMITFFLRSQGVLGSAECSCGRNHFTCAVSAFGECTCIPAQWQCDGDNDCGD
HSDEDGCMLPTCSPLDFHCDNGKCIRRSWVCDGDNDCEDDSDEQDCPPRECEEDEFHCQN
GYCIRSLWHCDGDNDCGDNSDELCDMRKCSDKEFRCTDGSCIAEHWYCDGDTDCKDGSDE
ENCPSDVMTATCSVEEFQCAYGRCILDIYHCDGDDDCGDWSDESDCSSHQPCRSVEFMCS
SGMCINAGWRCDGEFDCDDQSDEKNCTTSMCTADQFRCASGRCVRLSWRCDGEDDCSDGS
DEDDCEKTDTPPCAPDQFLCGNGRCIGQRKVCNEVSDCGDGTDEHPHQDCRPRSSDGNCN
LNNGGCSQKCQMARGLVQCTCHTGYRLMEDGRACQDVDECAEEGYCSQGCTNTEGGFQCW
CVQGYELRPDKRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHNQ
ELVFWSDVTLDRIMKANLNGSNVEEVVSTGLESPGGLAIDWIHDKLYWTDSGTSRIEVAN
LDGTHRKVLLWQSMEKPRAIALHPIEGKIYWTDWGNTPRIEYANMDGSNRRVIADTHLFW
PNGLTIDYAGHRMYWVDAKHHVIERADLDGRNRKAVISQGLPHPFAITVFEDSLYWTDWH
TKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGGRNRCGTNNGGCSHLCLPGNK
TYTCDCPTGFKKVDQHNCALSLDKFLLFARRTDIRRISFDTEDMSDDVIPLADVRNAVAL
DWHAEEGFIYWTDVTTDSINRAQWDGSRQEVVVDTSLESPAGLAIDWVTNKLYWTDAGTD
RIEVSNADGSMRTVLIWENLDRPRDIVVDPIGGYMYWTDWGVSPKIEQAGMDASSRIVII
SSNLTWPNGLAIDYQTQRLYWADAGMKTIEFGNFDGSDRQVLIGSQLPHPFGLTLHEEKL
YWTDWQSKSIQCANKMTGLGRQTLAENLENLMDIHMFHRYRTTVRTPCAVNNGGCSHLCL
LAPPTKGSSCTCPTGINLQLDGKTCTHGMSSFLIFARRTDIRMVSLDIPYFADVVLAVNR
SMKNTIAIGVDPKEGKVYWSDSTLKKVSRANINGTAHEDIIATGLMTTDGLAVDAVGRKI
YWTDTGTNRIEVANLDGSMRKVLIWQNLDSPRAIALYHEMGYMYWTDWGEHAKLERSAMD
GSDRLVLISNNLGWPNGLAIDSAGSQLLWADAHTERIEAADLNGLNRRTLVSPVQHPYGL
TLLGPHIYWTDWQSRSIQRADKTTGANTITVRSNLPGLMDIQAVDREKPLGFNKCGRRNG
GCSHLCLPRPNGTSCACPTGILLKGDARSCDDSPETYLLFSNRVSVRRISLDTNDHTDVH
VPVPELHNVISLDYDSVDGKLYYTDVSLDVIRRANLDGTGMETVISQGLKTTDGLAVDWV
TRNMYWTDTGRNTIEVARLDGTSRKVLVNNSLDEPRAIAVFPSKGYLFWTDWGHIAKIER
AHLDGSDRKVLINTDLGWPNGLTLDYDTRRIFWVDAHLDRIESSDLNGKLRQILISPVSH
PFALTQQDRWIYWTDWQTKSIQRVDKHTGRSKETVLANVEGLMDIIIVSPQRQSGTNHCG
VNNGGCTHLCFANTNSFVCACPDEPDSRPCSTISGYVPTSPDRETTSTPAPNKIPEAPTD
TPQQGPPLINCTDKSLSVEGCLESNVVTAPHGEGLHISYVIGGALTILAILIIITAFIIY
RHKKSKFADPGVSNLTYSNPSYRTSTQEVKIETSQKPPIYNQLRYKKEGGGDSGYTKEKI
RIVEGVCLLSSEELYWEDLKQLKPSRGGLHTCMRTDTVSLQASSASLDDGETEQLLQEET
SECSSINTLTPVTITPQRHPQHSLPDTGWTPARKPSTESEV
NT seq
5706 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtctctgtggtgctgtgtagcatgataactttctttcttcgcagtcaaggcgtg
ttgggcagtgctgagtgttcatgcgggcgcaaccacttcacgtgtgcagtgagcgcgttt
ggggagtgtacatgtatcccggcccagtggcagtgtgacggggacaacgactgtggagat
cacagcgacgaggatggatgcatgctgcccacctgctctccactggacttccactgtgac
aatgggaagtgtatccgccgctcctgggtgtgtgacggggacaacgactgtgaggatgac
tccgacgaacaggactgtcctcctagagagtgtgaagaggatgagttccattgtcagaac
ggctactgcatccgcagcctgtggcactgtgatggggacaatgactgtggggataacagt
gacgagctgtgtgacatgcgtaagtgttccgataaggagtttcgctgtacagatgggagc
tgcattgctgaacactggtactgtgatggagacactgactgcaaggacggatcagacgag
gaaaactgcccatctgatgtaatgacggccacttgtagtgttgaagagttccaatgtgcg
tacggacgctgtattctggacatttaccactgtgacggagatgacgactgtggagactgg
tctgatgagtccgactgctcctcccaccagccttgtcgttctgtggagttcatgtgcagc
agtgggatgtgcatcaacgctggctggaggtgtgacggggagtttgactgtgatgaccaa
tcagatgagaagaactgcaccacctccatgtgtactgcggatcagttccgctgtgcatcg
ggacgctgtgtcaggttgtcatggagatgtgacggagaggatgactgctctgacggcagc
gatgaagatgactgtgagaagactgacacccctccatgtgctccagaccagtttctgtgt
ggtaacggccgttgtattggccagaggaaggtctgtaatgaggtcagcgactgtggagat
gggactgatgaacaccctcaccaggactgccgcccgcggtccagcgatggcaactgtaac
ctgaataacggaggctgttctcagaaatgtcagatggccagaggtctggtacagtgtacc
tgtcatactggctacagactgatggaggatggcagggcctgccaggatgtggatgagtgt
gcagaggagggctactgcagccagggctgtaccaacacagagggagggttccagtgctgg
tgtgtgcagggctatgagctgaggcctgacaagcgcagctgcaaggcgctgggtcctgag
ccagtgctgctgtttgcgaaccgtatagacatccgccaggtgttgccccaccggtcagag
tacactctgctgctgaacaacctggaaaatgccatcgctctagacttccaccacaaccag
gagctggtcttctggtctgatgtcacgctcgatcgcatcatgaaggctaacctaaacggg
agcaatgtggaggaagtggtttccactggcttagagagtccaggtggtctggctatagac
tggatccatgacaagctatactggactgactcagggacgtcccgtattgaggtggccaat
ctggatggaacccaccgcaaggtcctcctatggcagagcatggagaaaccccgagccatc
gcactgcaccctatagagggtaagatctactggacggactggggtaacactcctcgtatc
gagtatgccaacatggacggctccaaccgccgcgtcatcgccgacacccacttgttctgg
cccaacgggctgaccatcgactacgccgggcaccgtatgtactgggtggacgccaagcat
cacgttatcgaaagagctgaccttgacggacggaaccgtaaggccgtcatcagccaaggt
ttgccccatccatttgccatcacggtatttgaggatagcctttactggacagactggcac
accaagagcatcaacagtgccaacaagttcacaggcaagaaccaggagatcatcagaaac
aagctgcacttcccaatggatatacacacactgcacccgcagagacagcccgcaggtggg
cgtaaccgatgtgggaccaacaacgggggctgcagccacctctgtctccctggcaacaag
acctatacctgcgactgccccacgggcttcaagaaagtggaccagcataactgtgccctg
agtcttgacaagttcctgctttttgcccgaaggacggacatccgacgaatcagcttcgac
accgaggacatgtcggatgatgtcatcccgctggccgacgtacgcaacgccgtggcactg
gactggcatgccgaggagggcttcatctattggacggatgtcaccaccgactccatcaac
cgggcccaatgggacggctcaaggcaggaggtggtggtggacaccagtctggaaagtcca
gccggtctggctattgactgggtgaccaacaaactttactggaccgacgcaggtacagat
cgtatcgaggtatctaatgcagacgggagcatgcgtactgttctgatctgggagaatctt
gaccgacccagggacatcgtggttgacccaattggaggatatatgtactggacagactgg
ggtgtgagtcctaagatagagcaggcagggatggacgcatccagccgtatcgtcatcatc
tcttccaacctgacatggcctaacggactggcaattgactaccaaacacagcgcctgtac
tgggccgacgccgggatgaagaccatcgagtttggcaactttgatggctcagacagacag
gtgttgattggcagtcagttgccccacccctttgggctgactctgcatgaggagaagctc
tattggacagactggcagtcaaagagcatccagtgtgccaacaaaatgactggcctggga
cgacagacactcgccgagaacctggagaacctcatggatattcacatgttccaccgctac
cgcaccaccgtgcggacaccttgtgcggtgaataatgggggctgcagtcacctgtgtctg
ttggctccacccacaaaaggctccagctgtacctgtcctactggcatcaaccttcagctg
gatggaaagacctgcacacacgggatgagtagtttcctgatctttgcacggcggactgat
atcaggatggtctctctggacatcccctactttgctgatgtggtgctggctgtcaacaga
tccatgaaaaacaccatcgccatcggagtggaccctaaagagggtaaagtgtactggtca
gacagcacactgaagaaggtgagtagagctaacatcaatgggacagctcatgaggatatc
atcgctacaggtctgatgaccactgatggtctggcggtggatgcggtgggtcgcaagatc
tactggacggacaccggaacgaaccggatcgaggtggccaacctggacggctccatgagg
aaggttctgatctggcagaacctggacagcccgcgagccatcgccctctaccacgagatg
gggtatatgtactggacagactggggggagcatgctaagctggagcggtcagcgatggat
ggctcagaccgtttggttctgatcagtaacaaccttggctggcccaacggactggccatc
gacagtgccggctcacagctactgtgggctgacgcacacacagagcgcatcgaggcggca
gacctgaatgggctgaaccgccgtaccctggtatccccggttcagcacccgtacggtctg
accctactaggaccacacatctactggaccgactggcagagccgcagcatccagcgggct
gacaaaaccaccggcgccaacaccatcaccgtgcgcagcaacctgcccgggctcatggac
atacaggccgtggatagagagaagccactgggtttcaataagtgtggtagaaggaacggg
ggctgtagccacctgtgtctaccccgccccaacggtacttcctgtgcctgtcccaccggc
atcctcctcaagggggatgccaggtcatgtgacgactcccccgagacctacctgctcttc
tccaaccgggtcagcgtgcgacgcatctccctggacacaaatgaccacacagatgtgcat
gtgcccgtgcctgagctgcacaacgtcatctcactggactacgacagcgtggacgggaag
ctgtactacaccgatgtcagccttgatgttatccgacgggccaacctggatggtacaggg
atggagacagtgataagccagggtctgaagactactgatggtctggctgtggactgggtg
accaggaatatgtactggactgacacaggtcgcaacaccattgaggtggcccgactggac
gggaccagccgcaaagtactagtcaacaacagcctggatgaacccagggccatcgctgtg
tttcccagcaaagggtacctgttctggacagactggggtcacattgctaagattgagcgg
gcacacctagacggatcagaccgcaaagttctgattaacacagacctgggctggcccaac
ggactcacactggactacgacacacgcaggatcttctgggtggatgctcacctggaccgc
attgagagttccgacctaaacggaaagctccggcaaatcctcatcagccctgtgtcccac
cccttcgccctcacacagcaagaccgttggatctactggacggactggcagactaagtcc
attcagcgtgtagacaaacacactggccgcagcaaggagacggtcctggccaatgtggag
ggcctcatggacatcatcatagtctcgccacagaggcagagcggcactaaccactgtggg
gtgaataatggaggatgtactcatctctgcttcgctaatacaaacagctttgtctgtgcc
tgccctgatgaaccagacagcaggccctgctccacaatctcaggttatgtgccaacctca
ccagacagagagaccaccagcaccccagcccctaacaagatccccgaagcccccacagac
acgcctcagcaaggacccccactgattaactgcacagacaagagcctgagtgtggagggc
tgcttagagagcaacgtggtgacggctcctcacggggaggggcttcatatcagctatgtg
attggaggagcgttgaccattctggccatcctaataatcatcactgccttcattatttac
agacacaaaaagtccaagtttgctgaccccggggtgagcaacctgacctacagtaacccc
tcatataggacgtcaacgcaagaggtcaagattgagacctctcaaaagccgcccatttac
aaccagctacgatataagaaagagggtggcggggacagtggctacaccaaggagaagatc
cgcatcgtggaaggagtgtgtctcctctccagcgaggagctgtattgggaggacctgaag
cagctgaagccgtcacgtggtggtctgcacacatgcatgcgcacggacactgtgtccctg
caggccagcagcgcctcgctggacgacggcgagacagagcagttgctccaagaggagacg
tcggagtgttcgtccataaacacgctgacccccgtcaccatcacaccccaacgccacccc
caacacagcctgcccgacaccggctggacccccgcacgcaaaccctccaccgagagcgag
gtgtaa
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integrated database retrieval system
