Oncorhynchus tshawytscha (Chinook salmon): 112249018
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Entry
112249018 CDS
T05605
Symbol
atg13
Name
(RefSeq) autophagy-related protein 13 isoform X1
KO
K08331
autophagy-related protein 13
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04136
Autophagy - other
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112249018 (atg13)
04136 Autophagy - other
112249018 (atg13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112249018 (atg13)
03029 Mitochondrial biogenesis [BR:
otw03029
]
112249018 (atg13)
Membrane trafficking [BR:
otw04131
]
Autophagy
Autophagosome formation proteins
ULK complex
112249018 (atg13)
Atg1 complex
112249018 (atg13)
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
112249018 (atg13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
112249018
NCBI-ProteinID:
XP_024274364
LinkDB
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Position
LG04:54493096..54502869
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AA seq
549 aa
AA seq
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MMDSDLSPQDKKDLDKFIKFFALKTVQVIVQARLGEKVCTRSLSSPTGSDWFNLAIKDIP
EVTHEAKKALSGQLPGIGRSMCVEISLKTSEGDSMELETWCLEMNEKCDKDIKVSYTVYN
RLSLLLKSLLAITRVTPAYKLSRKQGHDYVILYRIYFGEVQLTGLGEGFQTVRVGVVGTP
IGTITLSCAYRTNLAFMSTRQFERTAPIMGIIIDHFVERPFGNMGHMRPCNYRAPGEDEG
AYNGVEDSQEVCTTSFSTSPPSQCVFTVSKAHLKTPKPAVMDTLKVPMMGLAFSHQLYCS
RLSYQPPVLVGAADFCHPSTLNAANPHQVTTQMGIPGKEGGVPQQVPVQPCHGAQAEHGR
VSSCPPADHVPATPSSSGEGAETLSRSIEVKGVSPCDVLETTFTRKVGAFVNKPGTQVTT
ASLDLPFAAFAPRAYDLEENDPMVQPPESPATSSPLQGSLHSQGSGESGGPAQDDFVMVD
FKPAFSKDDLLPMDLGTFYREFQNPPQLASLTIDVSSQSMAEDLDSLPEKLAVYEKNIDE
FDAFVDTLQ
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgatggacagtgatctaagtcctcaggataaaaaagacttggacaagttcataaagttt
ttcgctttgaagacagtgcaggtgatagtccaagcgcgacttggggaaaaagtatgcaca
cgctccttgtcttcacctactggctctgattggttcaatctggcaatcaaagatatccca
gaagttacacacgaggcaaagaaagctctgtccgggcagcttcctggcatcggacgatcc
atgtgtgttgagatctccctcaaaacctcagagggagactcaatggaattggagacatgg
tgtctcgaaatgaacgagaagtgtgacaaagatattaaggtgtcctacactgtctacaac
cgcctgtcattactgctcaagtcactgctggccattacaagggtaaccccagcctacaaa
ctctcacgaaagcaaggccatgactatgtcatactgtacaggatatattttggagaggtt
caactcacaggattgggagaagggttccagacagtgcgtgtaggagttgtgggaactccc
attggcacaatcaccttgtcttgtgcttacaggacaaacctggccttcatgtccaccagg
cagtttgagaggacggctccgattatgggcataattattgaccacttcgttgagcgcccc
tttggcaacatgggacacatgcgtccatgtaactacagagcacccggggaagatgaagga
gcatacaatggggtggaagattctcaggaagtgtgcaccacgtccttctccacttctcca
ccctcacaatgtgtgttcactgtaagtaaggcacatttaaagacccctaaacctgcagtg
atggacactctgaaagtccccatgatgggcctggccttctcacaccaactctactgctct
cgtctttcttatcagcctcctgttcttgtcggagctgctgacttctgccacccttccacc
ttaaacgctgccaacccacaccaggtaaccacccagatgggaatcccagggaaggagggg
ggcgtaccccagcaggtgcctgtgcagccttgtcatggtgcccaggcagagcatggacga
gtgtcctcatgcccccccgctgatcatgttcccgccactccctccagcagtggtgagggt
gcagagaccttgtcgaggagcattgaggtgaagggtgtctctccctgtgatgtactggag
accaccttcaccaggaaagtgggtgcctttgtcaacaagccaggcacacaggtaaccaca
gcaagcctggacttaccatttgcagcgtttgctcccagagcctatgacctcgaggaaaat
gaccctatggttcagccgccggagtccccagccacgtcctctcccctgcagggcagttta
cactcccagggctctggtgagagtggtggcccggcacaggacgactttgttatggtggac
tttaagcctgcgttctctaaggatgacctgcttcccatggaccttggcacattctacaga
gagttccagaaccccccacagctcgccagcctcactattgatgtcagttctcagtccatg
gcagaagacctggactctcttcccgaaaaacttgcagtatacgagaagaacattgatgaa
tttgatgcatttgtggacacattgcagtag
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