Oncorhynchus tshawytscha (Chinook salmon): 112249094
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Entry
112249094 CDS
T05605
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X4
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112249094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112249094
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112249094
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
112249094
NCBI-ProteinID:
XP_024274514
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All DBs
Position
LG01:29828201..29869465
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AA seq
512 aa
AA seq
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MSAEMDKTTDASGGDEEEWLYGDEIEEKAEEEAPNSAKAQPTAEEVHENGVVKQDTGQED
EESDSEDDDDVCVTIGDIKTGGSSQPFNAFGSTPVNLNIKAAGRTHASVGPKAKGVDLDA
LGSVNGIPVLEVDIESFEEKPWRKPGSDLSDYFNYGFNEDTWKTYCEKQRRIRMGYEGMN
HASATKIMVHQGRSAHGDRDGALSCFRSDYSSPSNHYNSGSSSRKPSGTIDVIGGQTGTI
SRVEGRRRHNIEGNNIQVLSEPPSDAEPTPTKMPPFFPPNIPPPPFPPPPHNVSSAPPLI
PPPRIPINVPPPGYPPGAPPPSLIPTLDSGRSGGYDGRSAPPYPPFPPGVYPPPPPGSAA
ASWAGVFDSAKAWEYYAQRDNERERHKERDRTRERGHEKEREREREHNPSSQVVNSEEDR
HRHRDYGERGYDRHHHERSSREKEERHREKRHRDKEEGRHKSSSSSSRRRHESEEGDSHR
RHKHKKVKRSREDKEPSQELSADQENQSEPTE
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaaatggacaaaacaactgatgcaagcgggggcgatgaagaagaatggtta
tatggagatgagattgaggagaaggcagaggaagaggcacctaatagtgcaaaggcccag
ccgactgctgaagaggtccatgagaatggagtagtgaagcaggatacaggccaggaagat
gaagaaagtgacagtgaggatgatgatgacgtgtgtgtaaccattggcgatataaagacc
ggaggctcgtctcagcctttcaatgcttttggatccacaccagttaatctcaacattaag
gctgcagggagaacacatgcgtcagttggccccaaagccaaaggagtggacctggatgca
ctgggcagtgttaacggaatccctgtgttggaggtcgacattgagtcctttgaagaaaag
ccgtggagaaagcctggttcggacctctcagactactttaactatggctttaacgaggac
acctggaagacctactgtgagaaacagaggagaatacgcatggggtatgagggcatgaac
catgcttcagccactaaaatcatggtccaccagggacgttcagcccatggtgatagggat
ggggccctttcctgctttaggtctgactattcctcccccagcaaccactacaattcaggc
tcctccagtagaaagccgagcggcaccattgatgttattgggggacaaactggtaccatc
agccgggtagagggacgaagacgtcacaatatagaaggaaataacatccaggtgctttct
gagcccccctctgatgctgagcctactcccactaagatgccccccttttttcctcccaac
atccccccgcctcctttcccgcctccaccccacaatgtcagctccgcccctccactcatt
cctccaccacggatccccatcaatgttcctccacctggctaccctcctggcgcaccacct
ccttctctgattcccaccttagacagtggacgctctggaggctatgatggtcgctcagct
ccaccgtacccccccttccctccaggtgtgtaccctcctcctcccccgggtagcgcagca
gcctcctgggccggggtattcgacagtgccaaggcctgggagtactacgcgcagcgggac
aatgagcgagagcgccacaaggaaagagaccgaaccagagaacgtggacacgagaaagaa
agagaaagggagagagagcacaacccttcctcccaggtcgtcaacagtgaggaggatcgg
caccggcacagggactatggggagagaggatatgaccgccaccaccacgagagatccagc
agagagaaagaagagagacaccgagagaagagacacagagacaaagaggaggggagacac
aagtcctcaagcagtagcagcaggaggagacatgagagtgaggagggggacagtcatcga
agacacaaacacaagaaggtcaagaggagcagagaggacaaggagcccagccaggaactc
tctgctgaccaggagaaccaatcagagcccacagagtga
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