Oncorhynchus tshawytscha (Chinook salmon): 112249110
Help
Entry
112249110 CDS
T05605
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha isoform X1
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04020
Calcium signaling pathway
otw04144
Endocytosis
otw04510
Focal adhesion
otw04540
Gap junction
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112249110 (pdgfra)
04020 Calcium signaling pathway
112249110 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112249110 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
112249110 (pdgfra)
04540 Gap junction
112249110 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
112249110 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
otw01001
]
112249110 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
otw04090
]
112249110 (pdgfra)
Enzymes [BR:
otw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
112249110 (pdgfra)
Protein kinases [BR:
otw01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
112249110 (pdgfra)
CD molecules [BR:
otw04090
]
Proteins
112249110 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
VEGFR-1-like_Ig-like
V-set
Receptor_2B4
Kinase-like
Motif
Other DBs
NCBI-GeneID:
112249110
NCBI-ProteinID:
XP_024274534
LinkDB
All DBs
Position
LG01:30114249..30134822
Genome browser
AA seq
1466 aa
AA seq
DB search
MDEMKRCLIIGVVLFGLLSVTCGLTPPTIVSTEDEFVLEPLSVFNISCTSKRNVAWVEPL
PVNTFVLPGFYMATLFIYNASVTHTGYYICKYQDEEGDEEDDEDNEAVIYVFVPDPKVPF
VPEEPGSMVVLVYPGETIIPCRVSDPRSPVVLKSVPSGVEVDAAYDNKIGFIGNLDAGLY
VCETIVNGVTMTSDIYTVKDNKLMEDFHVEVKASEEAVRLGEPFNITCVAPPGLPYQQQW
LHPMKQAVDAVQLKQALPDRVVYTLSIPAASSQDSGVYECSITNNFSGEIRANMVAVTVF
EENSFVMLDHSGIGAVEFVSMMEDTEFTISIEAFPAPKVTWLKDGIAITENSYFLTKTRR
LAGNHYQSTLTLRQSLEKDSGNYTVVVLSSAHTAQFSFTLKVKESGPVLFQPASAPVLFP
QREEWIVPLHTPFTLTCRGEAELAWDTPVYLSEQTEEDNSGLFITTVTVENATAGHTGFY
TCFYKGGNSTEEGEDSSIYIYVPDPEVPFVPSLVPFGNHVLNGHDEMEIQCRVSDPGANV
TLVNADTQQAVPMVVYDSKRGAVGFFSAGTYVCKALVNGEEHLSEEYIVHGWAGGSELRV
ELKAQKTALLVGDTITVICVARGSEILEDHWKYPGKLVDRGLKSVRENKRDQEIQYTLTV
PQASAKDSGIYVCSITDIISNENQTKKLAITVYERPFVSLRPAFSSQESADLDEVRQFQA
DIDSFPSAQVTWLKDGLPLNDVAAEITTSLRQVSETRYQSVLTLIRAKEEDSGNYTIRVQ
NGNQTHSHNFSLQVKVPAVIVDLMDLHHGSASGQSVVCIAGGMPTPKVEWFICKNIKHCA
NDSSEWVPLPTNNTEITVEAHIDQDNQLESQVIFGHLENTLAVRCLARNEMATVSREVKL
VSQDPHSELTVAAAALVLLVFVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEYIYVD
PMQLPYDSRWEFSRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSS
EKQALMSELKIMTHLGPHLNIVNLLGACTKSGPTYIITEYCFYGDLVNYLHKNRENFVSV
HPEKTKKDLDIFGINPADESSRSYVILSFESGKGDYMDMKQADTTQYVPMLEMSDASKYS
DIQRSEYNHPPSQKGDSEMDNMLSGDGNEGLSTTDLLSFTYQVARGMEFLSSKNCVHRDL
AARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNMYTTLSDVW
SYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMAKPEHAPTDVYEMMMKCWNSEPEK
RPSFFSLSESVASLLPSGYKRCFERVNHEFLKSDHPAVTRVQVENDDTYVGITYKNQGKS
KDRESGFDEQRLSSDSGYIIPLPDLDPLSDDEYCKRNRHSSQTSEESAIESGSSSTLAKR
EGETLEDITLLDEMCLDSELVEDSFL
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaatgaagagatgtctcatcattggggtggtcttgtttggattgttatcggtt
acctgcggactgacgccaccgaccattgtatcaactgaagatgagtttgttctcgagcca
ctctctgttttcaacatcagctgcactagtaaaaggaacgttgcttgggtcgagccctta
ccggtcaacacattcgttttgcctggattttacatggccacgctcttcatctataacgct
tccgtgacacacaccggatattacatctgcaaataccaagacgaagagggcgatgaagag
gatgatgaagacaatgaagcagtcatatacgtttttgtcccagatcccaaggttccgttc
gtgcccgaggagccaggtagcatggtagttctagtctatcctggtgaaaccatcatccca
tgcagggtgtcagaccctcgatccccggtggtcctaaagagtgttcccagtggagtagag
gtggacgctgcttatgacaacaagatcggcttcattggcaacctggacgctggactctac
gtctgtgagaccatcgtgaacggcgtgacaatgaccagtgacatctacaccgtgaaggac
aacaaactgatggaggacttccatgtggaggtgaaggccagcgaggaggcagtgagactg
ggggaacccttcaacatcacctgtgtggcacctccaggactgccctaccagcagcagtgg
cttcaccccatgaaacaggctgtggatgcagtccagttgaagcaggctctgcctgataga
gtggtctacaccctcagtatcccagcagcctcctctcaggacagtggggtgtatgagtgc
tctatcaccaacaacttcagtggagagatcagagccaacatggtggctgtcactgtcttc
gaggagaactcctttgtgatgttggaccacagtgggattggagcggtggagtttgtcagt
atgatggaggacacagaattcaccatcagtattgaagccttccctgctcctaaagtcacc
tggctgaaagacggtatcgccatcactgagaacagctacttcctcaccaagaccagacgt
ctggcgggcaaccactatcagagcactctgactcttcggcagtcactagagaaggacagt
gggaattacaccgtcgtggtcctcagcagcgctcacactgcccagttctccttcaccctc
aaagtgaaagaatcaggcccagtactgttccagccagcctcagcgccagtgctgttcccc
cagagagaggagtggattgttcccctccacacccccttcaccctgacctgcaggggcgag
gccgagctggcctgggacacgcccgtctacctatcggagcagaccgaggaggacaacagc
ggcctgttcatcaccactgttaccgtagagaacgcgacagcagggcacactggcttctac
acctgcttctacaaaggagggaactccactgaggaaggagaggacagcagcatctacata
tatgtgccagatccagaggtgcccttcgtaccctcgctggtgccctttggaaaccacgtc
ctgaatggtcatgatgagatggagatccagtgtcgcgtatcagaccccggtgccaatgtg
accctggtcaacgctgatacccagcaggccgtgcccatggtggtttacgacagcaagagg
ggtgccgtgggcttcttcagcgcaggaacctacgtctgtaaggccctcgtcaacggagag
gagcacctcagtgaggagtacatcgtccacggctgggcaggggggtcggagctgcgtgtg
gagctgaaggcccagaagacagccctcttggtgggagacaccattactgtcatttgtgtg
gcccgggggtctgagatactggaagaccactggaagtaccctggaaaactggtggaccgg
ggcttgaagtcggtgcgtgagaataagagggaccaggagatccagtacacattgactgtc
ccccaggcctcagccaaagacagtggcatctatgtctgctccatcactgacatcatcagc
aacgagaaccagaccaagaagctggccatcactgtctatgagaggccattcgtgtcgctg
cgcccggcgttcagttcacaggagtcagcagatttggatgaggtcagacagttccaggct
gacattgactcctttcccagcgctcaggtcacatggctcaaagatggcctccctctcaac
gacgtggcggctgagataaccaccagcctccggcaggtcagcgagaccaggtaccagagt
gttctgaccctgattcgggccaaagaggaggacagtggaaactacaccatcagagtgcag
aacgggaaccagacccacagccacaacttcagcctgcaggtcaaagtgcctgcagtcatt
gtggacctgatggacctccaccatggctcagcctcaggccagtctgtagtgtgtatcgct
ggaggcatgcccactcctaaggtggagtggttcatctgcaagaacatcaaacactgtgcc
aacgactcgtctgagtgggtgcccctgcctaccaacaacacagagatcactgtggaagcg
cacatcgaccaggacaaccagctggagagtcaggtgatctttgggcatctggagaacacc
ttggctgttcgctgcctggccaggaacgagatggccaccgtcagcagggaggtcaaactg
gtgtcacaagaccctcactcagagctgactgtagctgctgctgccctggtgctgctggtc
tttgtcatcatctcactcattgttctggtcattatctggaaacagaagcctcgctatgag
atccgttggagggtgatagagtcagtgagccctgatggtcatgagtacatctacgtggac
cccatgcagctgccctatgactccagatgggagttctctcgtgatgggctcgtactggga
cgtatcctgggctctggggcgtttgggaaggtggtggagggaactgcatacggactcagc
cgctcccagcccgtcatgaaggtggccgtgaagatgctgaaacccacggcccgctccagt
gagaaacaggccctgatgtcagagctgaagattatgactcacctgggccctcacctcaac
atcgtcaacctgcttggggcctgtaccaagtcaggccccacctacatcatcactgagtac
tgcttctatggagaccttgtcaactacctgcacaagaacagagaaaactttgtcagcgtg
cacccagagaagaccaagaaagacctggacatctttggcatcaaccctgcagacgagagc
agcaggagctatgtgatcctgtcctttgagagtggtaaaggggactacatggacatgaag
caggcagacaccacgcagtacgtgcccatgctggagatgagtgacgcctccaagtactcc
gacatccagaggtccgaatacaaccacccgccatcacagaagggtgatagtgagatggac
aacatgctgtcaggggatggtaacgagggcctcagcaccacagacctgctcagcttcacc
taccaggtggccagaggcatggagttcctatcctctaagaactgtgtgcatcgggacctg
gctgccaggaatgtcctgctctctcaggggaagatagtaaagatctgtgactttggcctg
gccagagacatcatgcacgacaacaactacgtctccaaaggcagcaccttcctgccagtg
aagtggatggccccggagagtatctttgacaacatgtacaccaccctcagtgacgtctgg
tcctacggcatcctcctctgggagatcttctctctaggtggcaccccatacccagggatg
gtagtggactccagcttctacaacaagatcaagagtggctacaggatggccaaacctgag
catgcccccactgatgtgtatgagatgatgatgaagtgttggaatagtgagcctgagaag
aggccttccttcttcagcctgagtgagagcgtggcctcactgctgccttccggctacaag
aggtgtttcgagagggtgaaccatgagttcctgaagagtgaccacccggcagtgaccagg
gtccaggtggagaatgacgacacctacgttgggatcacctataagaaccagggcaagtcg
aaagacagggagagtggcttcgacgagcagcgcctcagctctgacagtggttacatcatc
ccccttcctgacctggaccccctgtctgatgacgagtactgcaagaggaatcgccacagc
tctcagacgtctgaggagagtgccatagagtcgggctccagctccacgctggccaagaga
gaaggagagaccctggaggacatcaccctattggatgagatgtgtctggactcagagctg
gtggaggacagctttctgtga
DBGET
integrated database retrieval system
