Oncorhynchus tshawytscha (Chinook salmon): 112249169
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Entry
112249169 CDS
T05605
Symbol
clocka
Name
(RefSeq) circadian locomoter output cycles protein kaput
KO
K02223
circadian locomoter output cycles kaput protein [EC:
2.3.1.48
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112249169 (clocka)
03036 Chromosome and associated proteins [BR:
otw03036
]
112249169 (clocka)
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
112249169 (clocka)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
112249169 (clocka)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
112249169 (clocka)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_11
PAS_3
HLH
PAS
PAS_9
TraS
Motif
Other DBs
NCBI-GeneID:
112249169
NCBI-ProteinID:
XP_024274645
LinkDB
All DBs
Position
LG01:complement(30346551..30407903)
Genome browser
AA seq
936 aa
AA seq
DB search
MTSSIGGDDASSIFDGLMEEDEKDKAKRVSRNKSEKKRRDQFNVLIKELATMLPGNTRKM
DKSTILQKSIDFLRKHKEIAAQSESSEIRQDWKPPFLSNEEFTQLMLEALDGFFLAIMTD
GNIIYVSESVTSLLEHLPSDLVDQNLLNFLPLGEHSDVYKALSSHILEGETLTPEYLKTK
NQLEFCCHMLRGTIDPKAPPVYEYVKFIGNFKALNNVPNSTRNGLEGMIQRSLRPAFEDR
VCFIATVRLAKPQFIKEMCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTS
GYDYYHVDDLESLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEF
IVCTHTVVSYAEVRAEQRRELGIVESPPPEIFAVDKDSGSESQHQLNTSSLKEALERFDR
SRTPSTSSRSSRKSSSHTAVSNPASPKLKSDRGTPGCQSVSAIEMTSQRRSSVSSQQSMS
SQHTQNTGQNMAPSIVSQQHHQQQQQRQQQPQPQRQQQQPPPPQQQQPPPPQQQQPPPPQ
QQQPPPQQQQQPPQEQQPPQQQLQIQPSVQPMVQFSTQLDAMQHLKDQLEQRTRRIEANI
QRQQQELRQIQEELQKVQGQGLQMFLQQGAGGLSLSSVQLAQGTTMQPGDALNMQGQVVS
AGNLQGSTQQQHTVQRQPQQQAQPQQQNLLQDTSSVLSQSSVRSTHSLPPQQSALPASLY
NTMMISQPNQANVVQIANSLAQNSSNNTATVATFAQDRSGQIRFPAGSQLLTKLVTGPMA
CGAVMVPTTMFMGQVVTAFAPQQGQTQTISIAQQQPQQQEQQTQAQSQALATQHGQVQQQ
TQFLQGPRLLHGNQSTQLILQAAFPLQHQGAFATTQLQQQQQQQQQLQQQHQQQQQQLQQ
QQQQQQQQLQQQQQQEQQLASHRAGSMSGRSSTQPQ
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgacttccagcataggcggggatgacgcaagcagtatctttgatgggttaatggaagaa
gatgaaaaggacaaagcaaaacgagtatcccgtaacaagtctgagaagaagcgcagagac
cagttcaatgtcctcatcaaggagctggctaccatgttgccaggcaacactcggaagatg
gacaagtctaccatcttacagaagagcatcgatttcctgcgcaagcataaagaaatcgct
gcgcagtcagagtcaagtgagatccgacaggactggaaacctccttttcttagtaatgaa
gagttcacacagctgatgctggaggcgttagacggcttcttcctagcaattatgactgat
gggaacataatctatgtctcagagagtgttacatctctactggaacatcttccttctgac
ctggtggatcagaacctattgaacttcctgcccctgggggaacattcagacgtgtataaa
gccctgtcgtctcacatactggagggcgagacgctaacgcctgagtatctcaagactaaa
aaccagttagaattctgttgccacatgctcagagggacgattgaccctaaagctccccct
gtgtacgagtatgtcaagttcatcggaaacttcaaggccctgaataatgtacctaactca
actcgaaacggcttggaagggatgatccagcgttcactccggcccgcttttgaggaccga
gtctgtttcatagcaactgtgagattagctaaaccacagtttattaaggagatgtgcact
gtggaagaacccaatgaagaattcacctccagacacagcttagaatggaagttcctcttc
ttggaccacagggctccgcccataataggttacctgccgtttgaggttctgggtacatct
ggttatgactactaccacgtggatgacctggagtcactggccaaatgccacgaacactta
atgcagtatgggaaggggaagtcgtgctactacaggtttctcaccaaagggcagcagtgg
atctggctccagactcattactacatcacctaccaccagtggaactcaaggcccgagttc
atcgtctgcacgcacactgtcgtcagctatgctgaggtaagggctgaacagcgcagggag
ctggggattgttgagtcaccgccgccagaaatctttgcggtagataaggactctggttct
gagtctcaacaccagctcaacacctccagcctgaaggaggccctggagcgatttgaccgc
agccgcacgccctccacctcctcacgcagctcccgcaagtcctcgtcccacaccgccgtc
tccaatccagcctcacctaagctaaagtcagacaggggtacaccaggatgccagtccgtc
tctgctattgagatgacatcacagcgaaggtcgtccgtcagcagtcagcaatcaatgagc
tcccagcacacccagaatacagggcagaacatggccccgtccattgtttcacaacaacat
catcaacagcaacagcagaggcagcagcaaccacaaccacaacggcaacagcagcaacca
ccaccaccacaacagcagcaaccaccaccaccacaacagcagcaaccaccaccaccacaa
cagcagcaaccaccaccacaacagcagcagcaaccgccacaagagcagcaaccgccacaa
cagcagctgcagatccagcccagtgtccagccaatggtacagttctccacccagctggat
gccatgcagcacctgaaggatcagctggagcagaggaccagaaggattgaggccaacatc
cagaggcagcagcaagagctcaggcagatccaggaggagctccagaaggtgcagggccag
ggcttacagatgttcctccaacagggtgcaggtgggctgagcctgagctctgtgcagctg
gcccaggggaccaccatgcagccaggtgacgctctcaacatgcagggtcaggtggtgtct
gcaggcaacctgcagggcagtactcagcagcagcacacggttcaacggcaacctcagcag
caggcccagcctcaacaacagaacctgctacaagacaccagctctgtcctctcacagtct
tctgtgaggtcgactcactctctgccaccccagcagagtgccctgccggcctccctctac
aacaccatgatgatctctcagcccaaccaggccaatgtggtccagatagccaacagcttg
gcccagaacagcagcaacaacactgcaactgtagcaacctttgcccaggaccgctcggga
cagatcaggttcccagctggctctcagttgctgactaagctggtgactggtccgatggcg
tgtggagcggtcatggtccctacgaccatgttcatgggccaggtggtgacagcgttcgct
cctcagcagggccagactcagacaatcagcatcgcccagcagcagcctcagcagcaggag
cagcagacgcaggcgcagtctcaggccttagccacacagcatggacaggtccagcaacaa
acccagttcctccagggccctcggctgctccatggaaaccagtccactcaattgatcctg
caggcggcgttcccactgcagcatcaaggcgctttcgccaccacgcaactgcagcagcag
cagcaacaacaacaacagttacaacagcaacatcagcagcaacagcaacagctccagcag
cagcaacaacaacagcaacagcaactccaacaacagcagcaacaggagcagcagctggcc
tctcacagggcaggtagcatgtcaggtcgctccagcacacagccccagtaa
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