Oncorhynchus tshawytscha (Chinook salmon): 112249192
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Entry
112249192 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase NEDD4-like isoform X1
KO
K10591
E3 ubiquitin-protein ligase NEDD4 [EC:
2.3.2.26
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04120
Ubiquitin mediated proteolysis
otw04144
Endocytosis
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112249192
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112249192
09144 Cellular community - eukaryotes
04530 Tight junction
112249192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112249192
04121 Ubiquitin system [BR:
otw04121
]
112249192
03029 Mitochondrial biogenesis [BR:
otw03029
]
112249192
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112249192
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
112249192
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
HECT type E3
112249192
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Morphogenesis factors
112249192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
Motif
Other DBs
NCBI-GeneID:
112249192
NCBI-ProteinID:
XP_024274692
LinkDB
All DBs
Position
LG04:64921727..64968415
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AA seq
1268 aa
AA seq
DB search
MARRLRLHFASRRSNTDPLSERLSSHGEESGLCVSTRSPAEILAHSSVQMKAIPGKLALA
LPPLSPEYGNLQRYSSVFIPKVNTVSKKSTLQISLQPRGKLNGELENSTEGGEPGVCEVG
AGSGSDGVSCSSSTASDAGYCSSSSIFEPEFPDQRRASHERTLPRRKARVPLRRCSSLVI
FPRSPCNTPPASPVSPVALPALPLARGSYQTSHQLQLSPSEPPQEDETGTSKASIATAMN
GMRLSKSSFPSAEFRDARPMVHFNIPLPDRPKDKMEECEKTDHSATLDRPCRDKADLSAN
LDQHSSVLLHFAHQRPMSGKASRNRTTVNVECPKSPTQAPQSEGECGPRHIKLFRSTSAC
FLPSTKLSERSHIAGLADNGNGQEMPEENHCHHALQRSFSLEVPYHNTGISCHVSNQNLS
NSPHVHIHVSHGSGARVSSPVIDVNTNHKRDHMQKSPARKTTTRDDFLGQVDVPLHQIPT
ENPNIERPYTFKDFLLHPRSHKSRVKGHLRLKMTYLPKNNSEDAAEQTEDMDPSWEFLEG
QDMSGPRHNHLLPAMPPGWEERQDNLGRTYYVNHETRTTQWHRPIVQDSQVEAEQRQNIH
MEAQHAFTARRQISDQEDSNDRHESPESWEIMTEDESTLYNSQRSPPPPHSPLEFHSFCD
ELSRLQASGATSGNRRTSLQLQGPSSHSSHSSRRGSAQTLTVEEHPVHPVLLATSAGLPP
GWEEKQDSKSRPYYVNHNSRITTWTRPLIQITSEAAAQALLSQNATVYQPPMLPPEGSPQ
HSPGSQRECGFMPAGWEVRNAPNGKPFFIDHNTKTTSWEDPRLKIPVHMRRRPSLDPTDL
GPMPPGWEERVHSDGRIFYIDHNTKNTQWDDPRLQNSAITGPAVPYSRDYKQKYEYFRKK
MKKPADIPNRFEMKLRRNAVLEDSYRRILSIKRADFLKARLWVEFEGEKGLDYGGMAREW
FFLISKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLL
DAFFIRPFYKMMLQKPITLQDMESVDSEYFNSLKWILENDPIDLDLRFTIDEELFGQTHQ
HELKPGGSEIVVTDDNKKEYIHLVMQWRFVNRILKQMTAFKEGFYELIPQDLIKIFDENE
LELLMCGLGDVDVNDWRENTKYKNGYCPNQPVILWFWKTVLLMDAEKRIRLLQFVTGTSR
VPMNGFAELYGSNGPQLFTIEQWGTRDKLPRAHTCFNRLDLPPYESFEELREKLHIAIEN
AQGFDGVD
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtcggctccgcttgcactttgcgtcgagaagaagcaatacggatcctctgtca
gagagactgagcagccatggtgaggagagcggtctctgtgtgtcaacccgcagccccgca
gagatcctagcacacagctctgtccaaatgaaggcgattccagggaagctagccttggct
ttgcctcccctgtccccggaatatggtaatttacagcgctactcatccgtatttataccc
aaggtgaacaccgtcagcaagaagagtactctgcagatctccctgcagccccgtggcaag
ctgaatggagagctggagaacagcactgagggcggcgagccaggggtctgcgaggtggga
gcaggcagtggctcagacggggtatcctgtagcagcagcacggccagcgacgcaggctac
tgcagcagcagcagcatctttgagccagagttcccagatcagcgtagggcatcccatgag
agaactctgccccgtaggaaagccagggtccccctgagacgctgctcatccctggttata
tttccaaggagcccctgtaatacaccaccagcctccccggtcagccctgtggcactaccc
gccctgcctctagccaggggctcctaccagacttctcaccagctccagttgtcccccagt
gagcccccgcaggaggacgagacggggacctcaaaagcgtccatcgccacggcgatgaac
ggcatgcgactctctaagagcagctttccgtcagcggagttcagagacgccaggcccatg
gtgcattttaacattccccttccagatagacctaaagacaaaatggaggagtgtgagaag
actgaccactcggctaccttagacagaccgtgtcgcgacaaggccgacctatcggcaaat
ttagaccaacactccagtgtgctactgcactttgcccaccagcgaccaatgtctgggaag
gcatctagaaacagaacaacagtcaatgttgaatgtcctaaatctccaacccaggcccct
cagtcggagggtgaatgtggccctcgccacattaagctgtttcgcagcacctctgcttgc
tttctcccctcaactaaactttcagagaggagccacattgccggactcgcagacaatgga
aatggacaggaaatgcctgaggaaaaccattgtcatcacgccttacaaaggagcttttct
ctggaagtcccctaccataatactggtatttcatgtcacgtttccaaccaaaacctatct
aactctccacatgtgcacatccatgtgtcccacggctctggggcaagggtctctagccct
gtcattgatgtaaacactaaccacaaaagggatcacatgcaaaagagccctgcaagaaag
accacgacacgtgatgactttctggggcaggtggacgtgccattacaccagataccgaca
gaaaatccaaacattgaaaggccatacacattcaaggattttctacttcacccgagaagt
cacaaatccagggtcaagggtcatctccgtctgaagatgacctacctacccaaaaacaac
tcagaggatgctgcagaacagactgaagacatggatcctagctgggagtttctagagggc
caggacatgtccggtcccaggcacaaccacctgctgcctgcaatgccccctggctgggag
gagaggcaggacaacctgggcaggacctactatgtcaaccacgaaaccaggacgacacag
tggcacaggcccatagtacaagacagccaggtagaggcagagcaaaggcagaacatccac
atggaggcccagcacgccttcaccgcccgcaggcagatctccgaccaagaggactccaac
gacagacacgagtctcctgagagctgggaaatcatgacagaggatgagtccaccttgtac
aacagccagcgctccccccctccaccccactcccccctggagtttcactccttctgtgat
gagctcagtcgcctccaggcctcgggtgccacatccggcaaccgacgtacctccctccag
ctgcagggcccttccagtcattcaagtcactccagtcgcagaggcagtgcccagactctg
accgtagaggaacaccctgttcatcctgtgttgttagcaacctcagcggggctgcctcca
ggctgggaggagaagcaggacagtaagagcagaccctactacgttaatcacaacagcagg
ataaccacttggacacggccactcatccagataacctcagaggcagcagcccaggctctt
ctgtcccagaacgccactgtgtaccagccccccatgctccctcctgagggctccccccag
cactcccccggctcacagagggagtgtggtttcatgccggcgggctgggaggtccgcaat
gccccaaacggaaaacccttcttcatcgaccacaacactaagaccacttcctgggaagac
cccagattgaagattcctgtgcacatgaggaggagaccttcgctagacccaactgacctc
gggccaatgccgcctggctgggaggagagggtccacagtgatgggaggatattctacata
gatcacaatacgaagaacacacaatgggatgatcccagattgcagaattcagccataact
ggaccagctgtgccttactccagagactataaacagaagtatgaatacttccggaagaag
atgaagaaaccggctgacatccccaatcgctttgagatgaagctcaggcgcaacgccgtg
ctagaggactcctacagacgaatcctgtcaatcaagagggccgacttcctgaaggctcgg
ctgtgggtggagtttgagggagagaagggcttggattacggtggcatggccagggagtgg
ttcttcctcatctccaaggagatgttcaacccctattatgggctgtttgagtattctgcc
acggacaactacactctgcagatcaaccccaactcaggcctctgcaatgaggaccacctg
tcctacttcaagttcattggccgtgtggcaggcatggctgtctaccatggcaagctgctg
gatgccttcttcatcaggcctttctacaagatgatgttgcagaagcccattactctacag
gacatggagtctgtggacagtgagtacttcaactccctgaagtggatattggagaatgac
ccgatagacctggatctgaggttcaccatagacgaagagctctttggacagacacaccag
catgagctgaagccaggaggatctgaaatagttgtcaccgatgacaacaagaaggaatac
atccatcttgtcatgcagtggaggttcgtgaacaggatactgaagcagatgaccgcattc
aaggagggattctatgagttgataccccaggatctcatcaagatatttgacgagaatgag
ctggagctcctgatgtgtggcctgggagacgtggatgtgaacgactggagggagaacacc
aagtacaagaatggctactgtcccaaccagcctgtcatcctgtggttctggaagactgtt
ctgctgatggatgcagagaagcgtatccgcctgttgcagtttgtgactggcacctcccgg
gtcccaatgaatggctttgcagagctctatgggtctaacggaccacagctgtttaccatt
gagcagtggggaacacgagacaaactacccagagcccacacatgcttcaaccggctggac
ctgcctccctatgagtcgtttgaggagctgagggagaagctacacatcgccatagagaat
gcacaaggctttgatggagtagattag
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