Oncorhynchus tshawytscha (Chinook salmon): 112249413
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Entry
112249413 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger RNA-binding protein-like
KO
K13203
zinc finger RNA-binding protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112249413
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
112249413
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DZF_N
DZF_C
zf-met
zf-C2H2_jaz
zf-U1
Motif
Other DBs
NCBI-GeneID:
112249413
NCBI-ProteinID:
XP_042176154
LinkDB
All DBs
Position
LG04:2339622..2396669
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AA seq
1120 aa
AA seq
DB search
MYICMQCACAPGPFPGPTFSYKYAGLQDKSSSENTNPMIPICPVVSFTYVPSRLGEDAKM
ATGNYFGFTHGGAAQYSQQPAAGVAYTHPTTVASYTVHQAPMAAHSVAAAYAPTGATVAV
ARPAPVAVAAAATAAAYGGYQAAHATADYGYARQPDXPPPPPVTSQNYQDSYSYVRPTAP
AVTYDPKQYYQQPVASSAVAAAVAVQPQPTAESYYQTASLNTSWDTTWKKSLPAPKTGYS
QASLTPYTQTQQSRQVTAIKPVTPSPASSTFSIYPVSTVQPVAAVASVVPSYSQSPTYST
NAVTYSGTSYSGYEAAVYSAASTYYQQQQQQQKQAVAAVAASAAWTGSSFTKKPPFQSKQ
LKPKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEVALKVSQSSSSSSSGGGSA
RGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPSVVTQTSTTS
SKTPVSSSTTPTGSTSNSSYLKPVNIVSQGGAGAGLGKGLVGNNLSAANATTAVKKVNTP
KINFVGGNKLQTTGKVETSKPPPSSLVPQPQETKNESSDSLSTLAALQNDVQPVGHDYVE
EVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPELQVEVKPSIRARK
IQEEKMRKQMQKEEYWRRREEEERWRMEMRRYEEEMYWRRMEEQHHWDDRRGGPRMPGDG
PYLQGTPGPPGLLGVRPGMPIPQPQGPVPPRRPDSSDDRYVMTKHATIYPSEDELQAIQK
IVSITERALKLVSDIIIDQDKTKETTGEDKDTKEVPKTPQDRALKGVMRVGVLAKGLLLC
GDNNVNLVLLCSEKPTKNLLSRIVEHLPKQLTVVTPEKYEVKGSIENCSIILTSEADPKM
TVTITLTSPSIREEEETPTTPPPRDGDVTLVKDPEDVLDRLKCLAALAALRHAKWFQARA
NGLQSCVIVIRILRDLCQRVPTWSAFPSWAMELLVEKTISSASGPLSPGDALRRVFECIS
SGILLPGGPGLVDPCEKNPTDTLTAMEEQHREDITSSAQFALRLLAFRQIHKVLGMDPLP
QMKPRFNVCTNRKRRRDNSDGTDGFEGEGKKDKKDFDSSC
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgtatatctgcatgcagtgcgcatgtgcgcctggtccatttcctggtccgaccttctca
tataaatacgcagggttacaagacaagagttcgtcagaaaatacgaacccaatgattcct
atatgtccagtggtctccttcacctatgtgcccagccggcttggtgaagatgccaaaatg
gctaccggcaactactttggatttacccacggtggtgctgcacagtacagtcagcagcca
gctgcgggggtggcctacacccaccctaccaccgtggccagctacaccgtacaccaggca
ccgatggctgcccactccgtggcagcagcctacgctcccaccggcgccacagtcgccgta
gccaggcctgcccctgtcgccgtggcagcagcagccactgccgcagcctacggagggtac
caggcggcgcacgccaccgctgactacggctacgcacgccagccagacngtcccccgccg
ccccctgtcacgtcccagaactaccaggattcctactcctacgtacggcccacggcccca
gcggtaacctacgaccccaagcagtactaccagcaacccgtagctagctctgcggtagcc
gctgcggtagccgtacagccccaacccaccgccgagtcctactaccagaccgcctccctt
aacacctcctgggacaccacatggaagaaatccctaccagcccctaagacaggctacagc
caggccagtctgaccccctacacccagacgcaacagtctcgtcaggtgacggccatcaag
cctgtcactccctccccagcttcctccacattctccatttaccccgtgtccaccgtacag
cctgtggctgccgtcgcctccgtcgtcccctcctactctcagagtcccacctactccacc
aacgcggtcacgtactctggtacgtcgtactcgggctacgaggctgcggtgtactctgct
gcctctacctactaccagcaacaacagcagcagcagaaacaggctgtggcggctgtcgca
gcttcagcagcctggacaggcagctccttcaccaagaaacctcccttccagagcaagcag
ctgaaacccaagcagccccccaaaccaccacagatccactactgtgatgtctgcaagatc
agctgcgcaggaccccagacctacaaggagcacctggagggccagaagcacaagaagaag
gaggtggccctgaaagtctcccagagcagcagcagcagcagtagtggaggaggctcagcc
cgggggactcagaaccagctccgctgtgagctctgtgacgtctcctgcaccggggcagat
gcatacgctgcacacatccgaggagccaagcaccagaaggtggtgaagctccacaccaag
ctggggaagcccatcccttccacagaaccaagtgtagtgacccaaacctccacgacctcc
tccaagactcctgtctcctcctctaccacccccacaggctccacctccaactcctcctac
ctgaagccggttaacatcgtgagccagggtggtgcgggggccggactggggaagggtcta
gtggggaacaacctatcagcagccaatgccaccacagctgtcaagaaggtcaacaccccc
aagatcaactttgtcgggggaaacaagctccagactaccgggaaggtggagacatccaag
cctcctccgtcctcattggtcccccaacctcaggagacaaagaacgagtcatctgattcg
ctgtctaccctggccgccttgcagaatgacgtgcagcccgttggacacgactatgtggaa
gaggtgcgtaacgacgaaggcaaggtgatccggttccactgtaagctgtgtgaatgtagc
ttcaacgatcccaatgccaaagagatgcatctgaagggcaggagacaccgcctgcagtat
aagaaaaaggtgaacccggagctacaggtggaggtgaagccctctatcagagccaggaag
atccaggaagagaagatgaggaaacagatgcagaaggaggagtactggaggaggagagag
gaagaggagagatggaggatggagatgagacgttatgaggaggagatgtactggcgtcgt
atggaggagcagcaccactgggacgacagacgtgggggccccaggatgccaggggacgga
ccatacctccaggggacccctggcccacctggtctactgggggttcggcctggcatgccc
atccctcagccacagggacctgtgcctccccgtcggccggactcatcagacgaccgttac
gtgatgacgaagcacgcgaccatctacccctctgaggacgagctgcaggccatccagaag
atcgtctctatcacagagagagccctcaaactggtctcagacatcatcatcgaccaggac
aagaccaaggagactactggggaggacaaggatacaaaagaggttcccaagactccccaa
gaccgagctctgaagggggtgatgagggtgggggtcctggctaaaggactgctgctctgt
ggagacaacaatgtcaacctggtcctgctttgctcagagaaacccaccaagaacctgcta
agccgcatagtggagcatcttcccaagcagctgacggtggtgaccccagagaagtacgag
gtgaagggttccatcgagaactgttccatcatcctgacgtcagaagccgaccccaaaatg
acagtcaccatcaccctgacctcccccagcatccgagaggaggaggagacccctaccaca
cccccgccacgggacggagatgtaaccttggtgaaagacccagaggacgtcttggacagg
ctaaaatgccttgccgctctggcggctctgcggcacgctaagtggttccaggctagagcg
aacggactccaatcctgtgtgattgttattcgtatcctgcgtgacctctgtcagagggtc
cccacatggtccgccttccccagctgggccatggagctgctggtagagaagaccattagc
agtgcctctggccccctgagcccaggcgatgcactgagacgagtctttgaatgtatttcc
tctgggattctgctccccggtggcccgggattggtcgacccgtgtgagaagaaccccact
gataccctgacagccatggaggagcaacacagagaggacatcacctcaagtgcccagttt
gctctgcggctgctagccttccgtcagatccacaaggtgctgggcatggacccactgccc
cagatgaaaccccgcttcaacgtctgcaccaaccgcaagcgtcgccgcgacaacagcgac
ggaacggacggattcgagggtgaagggaagaaggacaagaaagatttcgacagcagctgc
tag
DBGET
integrated database retrieval system
