Oncorhynchus tshawytscha (Chinook salmon): 112249423
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Entry
112249423 CDS
T05605
Symbol
trim9
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM9 isoform X1
KO
K10649
tripartite motif-containing protein 9/67
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112249423 (trim9)
04121 Ubiquitin system [BR:
otw04121
]
112249423 (trim9)
Membrane trafficking [BR:
otw04131
]
Exocytosis
Calcium ion-dependent exocytosis
Others
112249423 (trim9)
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112249423 (trim9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
fn3
zf-B_box
zf-C3HC4_4
zf-RING_UBOX
PRY
zf-C3HC4_3
zf-C3HC4
zf-RING_5
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
112249423
NCBI-ProteinID:
XP_042186209
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Position
LG11:50947039..51052902
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AA seq
784 aa
AA seq
DB search
MLKDKSAVCAQSHFELSHIANFLELRDTISLRREFKMDEMEEELKCPVCGSFFREPIILP
CSHNICLACARNILVQTPDAESPQSSRASGSGVSDYDYLDLDKMSLYSEADSGYGSYGGF
VSSPTTPCQKSPNGVRVFPPAVPQPPSQHHLLGHPSSLPPIPRNSCLTCPQCHRSLILDE
RGLRGFAKNRVLEGVVDRYQQSKTAALKCQLCEKSPKEATVMCEQCDVFYCDPCRLRCHP
PRGPLAKHRLVPPAQGRVSRRTSPRKISTCTEHELENLSMYCVQCKMPVCYQCLEEGKHG
THEVKALGAMWKLHKGQLSQALNILSDRATEAKEFLVQLRNMVQHIQPTDGPGRPLLVTS
GWGTLKENGVEFEACLVAQCDALIDALNRRKAQLLTRVNNEHEHKLKVVRDQISHCTVKL
RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHMTEGQWGKGTLTPRMTSDFDLTLDSG
PLLQTIHQLDFIQMKVPSAPMLQLEECCTINNSATLSWKQPPLSTIAVDGYILELDDGNG
GQFREVYVGTETICTVDGLHYNSTYMSRVKAFNASGVGQYSKTLAMQTSETGQSPCDMQT
LATVAWFTFDPASAHPDIILSNDNLTVTCNSYDDRVVMGNSGFSRGVHYWEITVDRYDNH
PDPAFGVARGDVLKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTDGGVSEEATVGVLL
DFTRGVLIFLINDEQQGPVAFEGIEGIYYPAVSLNRNVQVTLHTGLPIPDFYTPGEADLS
GSVC
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaagataagtccgctgtctgtgcgcaatcgcattttgagttatcacatatagct
aattttctggaattgagagatactatttcactccgaagagaatttaaaatggatgagatg
gaggaagaattaaaatgccctgtctgcggatcgtttttccgggagccgatcattctaccg
tgctcccacaacatctgcctggcttgcgctcggaatatcctagtgcagaccccggacgct
gaatctccgcagagtagccgtgcttctggctcgggagtctccgactatgattacctggat
ctcgataagatgagcttgtacagcgaggcggacagtggatacggttcgtatggtggcttc
gttagttccccgaccaccccttgccagaaatccccaaacggggtgcgtgttttcccccct
gccgtcccccaacccccttctcagcaccacttgctaggacacccaagttccctacctcca
atcccacgcaactcctgcctcacatgcccgcagtgtcatcgcagcctcatcttggacgag
agggggctccgcgggtttgccaagaaccgggtgctggaaggggtcgtggaccggtaccag
cagagcaaaacagccgctctcaagtgtcagctctgcgagaagagtcccaaagaggccact
gtgatgtgcgagcaatgtgatgtgttctactgtgacccttgtcgcttgaggtgtcaccct
ccccgaggtccgctagccaagcatcgcctcgtacccccggcacagggccgggtaagccgt
cggacaagtccccggaagatctctacttgtacagagcacgaactggagaacctgagcatg
tactgtgttcagtgcaagatgccggtgtgttaccagtgtttagaggaagggaagcacgga
acacatgaagtcaaggctctgggagctatgtggaaactgcacaagggccagctgtcccag
gccctcaacatcctgtcggaccgagctacagaagccaaagagttcctggttcagctgagg
aacatggtacagcacatccagcccactgatggtccagggagacccttactcgtgacatca
gggtggggaacgctgaaggagaacggcgtggagttcgaagcctgtctggtggcgcagtgt
gacgccctcatcgacgccctgaaccgacgcaaggcccagctgctgacccgcgtcaacaac
gaacatgagcacaagctgaaggtggtgagggatcagatatctcactgtacggtgaagctg
cgtcagacgacaggcctgatggagtattgtctagaggtcatcaaagagaacgaccccagc
ggattcctacagatctcagacgccctgatcaggagggtgcacatgacagagggtcagtgg
gggaagggaaccctgacccccaggatgaccagtgactttgacctgaccctggacagcgga
cccctgttacagaccatccaccaactagacttcatacagatgaaagttccgtctgccccc
atgctccagctggaggaatgctgcaccatcaacaacagcgccacgttgtcatggaaacaa
ccacctctctccaccatcgccgtggacggatacatcctggagctggacgatggcaacggg
ggacagtttagggaagtgtacgtggggacggagacgatctgcacggtggatggactccac
tacaacagcacctacatgtccagggtcaaagccttcaacgccagcggagtaggacagtac
agcaagacgctggccatgcagacctccgagactggacaatccccatgtgatatgcaaacg
ctagccacagttgcctggttcacctttgaccccgcgtcggcccaccctgacatcatcctc
tccaacgacaacctgacggtgacgtgcaacagctacgacgacagggtggtcatgggtaat
tcaggcttctcccgcggtgtgcactactgggagatcacggtggatcgctatgacaaccac
ccggaccctgcgttcggggttgcccgcggcgacgtgctgaaggacgtgatgctgggtaaa
gacgacaaggcctgggccatgtatgtggacaacaaccgctcctggttcatgcacaataac
tcacacaccaacaggacggacgggggcgtcagtgaagaggctacagtaggagtgttgtta
gacttcaccagaggggtgctcatcttcctcatcaacgacgaacagcagggtcctgtggcc
ttcgaaggcatcgaggggatctactaccctgctgtcagcctcaaccgcaacgtacaggtg
accctgcacaccggcctgcccattcctgacttctacactccaggggaagcagacctgtct
ggctcagtgtgttaa
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integrated database retrieval system
