Oncorhynchus tshawytscha (Chinook salmon): 112249461
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Entry
112249461 CDS
T05605
Name
(RefSeq) vacuolar protein sorting-associated protein 13A-like isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112249461
Membrane trafficking [BR:
otw04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
112249461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
DUF5764
RRM_fung
DUF7006
Motif
Other DBs
NCBI-GeneID:
112249461
NCBI-ProteinID:
XP_042176346
LinkDB
All DBs
Position
LG04:complement(18581845..18662167)
Genome browser
AA seq
3268 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDTSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQENPALEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDDVTNPKCPLSFGMSLQ
NLSLQTADENWKPCLLNEKAKLFFKLVQLDNLFAYWNVNSMLYSNHMPDEALRCLQNSMD
IYSSTPMKHDFIFRPITANAKLSMNPRSDVNFSSPKVDLVVNLREVAVELNRPQYISILE
LLGSVDMMSRNLPYRKYRPQFHVHTNAYIWWQYVIMGIMEVDVKPRLHMWSWQRIHRHRQ
TVKCYRALYKSKITNKKPTEKLLREVEETERTLDIFNITLARQQAEMEASKAGLRIFRPG
VKVEEESQGWLGWMWSGWSGDDGAKSKEVKTGAFGELMTPAEKAKLYTAIGYSEVAVNHN
LPKNFEDIKIHFHMKRMSFSMKDNKDQNEILKVTVEDLKSMLTQRPGAQAIKLSAQLSLF
EVKGLANNRPAPTLLSSRKAATVTGTPLLDILFETNPLDESADQRLHVESQPLEIIYDAV
TVNSMSAFFLPPDDLQLDELTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYV
IVPQTGFYDSTQNLMLLDLGHFKVSSLSRKGLPQLSVGSRTIQDIMSQAYDSFNIKLSSL
QFLYSKPDGDWRKARKLKQSALHILEPVDVKVVFSRAMVVTDSRMPKFKIFGEMPLLSLR
ISDDKVRAVLELINSIPLPESRPAPRSTNTHSTPKAPKQSYTPQLTPRQPTMSELRNSLI
WESGSEEDLFYDAPSSPIGDSPFFPDNMPSPLQRSDSVKKRGLVKKDPKKNMTEFLMTFE
INKLSVQLCRLSRGQEVTVLHLDVERLGTELKIRTFDMTSNTFLREICLECSEYMDSEEK
KVHLITTLDNTEEDLLTLEYTKADKNGPEFKSQYKNTEQTVKVNFSSLDVHLHTEALLNA
MNFLNSLLPPTKEAVPSKEELPKIAEEDEGEGEEGEGDEGEKEESAVAKRTSSKKSKFED
VVNLHIRADLNCLKVFIRGHSHMIAEICIEGLVSEVLMRRKAVEVLANLKNIVILDCDKE
ALYKQCVSIADKEVFAFRMVNHTDATEGDAYLDMGKVDTSITLTVGCIQVIFLNKFVSSI
LAFINNFQVAKEALAEVTVQAAEKAATGVMELAERSVRISLDVDFKAPLVFLPQSSSSTN
VTVADLGMVTVKNCFALVDSQTHVKIPPIIDTMTVVLSDLKMYRTTFEKGRFQGEIQVLK
PVNLDLSIQRNLSASWYHSIPDIKITAHLKPMNLILSQDDMTVVLRTLGENMSETSDAAS
SRPPPSTVDHSDTATTKGSQGTGGTGTISTSGNIVVTAAVVETQKSTKLKNILKVDFKFD
SMTLVLYSPNGTEVQVLDSRDDQLMLAEFTLGTISTSVHMFSDGSMKASVKLTDCLLDDK
RRRVKNITARMMAIRPSAERNVMVEVNYNQGREGTSLETVVQDVYLCASMEFLLTVADIF
LKASQQGFSSAAPKNSSTKPTVTATTAFKEPAPVAVKSEMNVLVKNPEIVFVADLTRADA
PALVMTMECELVMKSNPDGQLMTAVVKELKVVACPFLREKRRNKETTVLQPCQVFFKSAQ
SSTSPQAMEVSIKALTLKVSPIIINTVITIQSVLSPAGADMPQSELESPVPPDLWERRSW
RDLKLWFLEEEGKDEDAQSLVRLIPQGESLQVAISSICLTLEAGVGHRTVPMLLAKSSFH
GDVKNWSTLINLHSQLNLEVHYFNEVMGLWEPLLEPLEDDIRDGFRSWTLGLKMKKKPVK
YSGISDEVDYSIPDYKTIISISSKDQLNITLSKCGLGMLSNLGTAFAEAAKQTSESFQED
EAPFVVKNRLGLTVSVVYSEMFCPLGCEATENRVELQNGESVNMDYRRTTTHSDQFSAMT
SLVAKDYYIQPTPAGHTSASMIPLIKVGRGMYSVMHKVSGVTRFLVCQIYSVQGSKHIKI
RSPFQIINHFSIPFRVMEGSMCLGMSLPTEEFCVPLDSYRSKLSLQPVTEGDNQYDSSEG
FSYESVSQQPGARVQQTCHRHGNSASVLMVNIVPLKDTVTSQHTGVAGEHFDEPYILHLW
PSVLLRNLLPYPITYRLQDSEEPAPITLMDGHSAELHTAVMDLSSLELRLLNYLGQDWKA
HYGLRGDQDEITFIVFHSLRDEDEEVRLGEGGERKRAELDIAVHVKYDAGLTEVAIHSPY
WMVNKTGRLLQYKADDIHRKHAMDYDMPLLFSFKPRNFLHNNKVRLMISDSELSDDFSLD
TVGSYGEVKCKGRLKDYLIGVKIDRSSFSLTRIVSFVPYYLLVNRTKHVIWVGEEGQEHW
TKAKPHQAAIPFWPEKDSKKLKIKVEGCQSTPQTMDFTKPENCLLLHLDNTLGGVIVDVN
LSDHSIIIRFSDYHDGAAPFLIINHTLEQTLEFYQRLRRDSSKCLADELLKLSFSLEETQ
RSSQKEKDKLSPGKAVYYTWAEPTGSRSLAWQCGSYSGELKSEEDLRLDVNEEGKLYLIS
FYEGLQRVALFTEDRRIYKLLCESEKAELAEQEIILSLQDVGVSLVNNSNHQEVSFIGIT
GSDVVWEFKPKKKSRWKPLSFKYAALLETHFREYTESGSVDNAILDLESNFQVSLTPNRQ
DMRMMKPCDAPIRRNFLPGVKVEYSVSARQSAYRVQINRIQIQNQLPGAIFPYVFYPIKL
PKSVTMDSEPKPLTDISIVTRAAGHSDISRIKYFMVLIQEMDLKLDLGFLYAILDLFTPE
NASVMTSEQMVELFEKDIKYLKTELNNISAADTSPISLYEYFHISPIKLHLSLSLSSGGE
DGNKEKRETEVIPVQSLNLLLKSIGATLTDVQDVVFKLAYFELTFQFRTRQQLQWEVIRH
YSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVK
ALVGGAVGGIAGAASRITGAMAKGVAAMTMDEEYQQKRREAMNKQPSGLREGLTRGGKGL
VSGFVSGITGIVTMPIRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRA
AETSQDVESLRPPRFIHEDGVIRPYKEREGIGSQMLQKIENGQFAKYRYFAHAKVNESDF
LMITKSGIFFVTKGTFGQLTCEWQYLFDEFTKKPMIVEGRRLRIEAKERVKSVFHAKEFG
KIINFKSPEIAKWVLTKLEDARENLHKY
NT seq
9807 nt
NT seq
+upstream
nt +downstream
nt
atggtattcgaaagcgtggtggtagatgtcctaaacaggtttctgggggactacgttgtg
aaccttgacacctcacaactcaagctcgggatttggggaggtgatgctgtgctcagaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtaagagccgga
catataggacgtttggagctgaagattccatggaagaatctgtacacccagtcagtggaa
gctacactggatggagtttacctgctcatcgtgcccacagccagtataaagtatgatgca
gagaaggaggagaaacagctccaggaggctcgtcagagggagctgcagaggatcgaagag
accaaacagaaagcagcggaacaagaaaacccagcacttgagaaacaagacacctttgtg
gagaaactggtgacacaggtgatcaagaaccttcaggtgaagatctccaacatccacatc
cgctatgaggatgacgtcaccaatcccaaatgcccattatcatttggaatgtctctacag
aacctcagccttcagaccgcagatgagaactggaaaccttgtcttctgaatgagaaagcc
aagctgtttttcaagcttgtccagttggacaatctctttgcctactggaacgtgaactca
atgctgtactccaatcacatgccagacgaggccctgcgatgcctccagaacagcatggat
atctacagttctacccccatgaaacacgatttcatttttcgtccgataacggccaatgcg
aagctgagcatgaacccccggtcagacgtaaacttctcttcacccaaggtagacttggta
gtcaacctgagagaggtggccgtggagctgaacaggccacagtatatcagcattctggag
ctcctgggctcggtggatatgatgtcacgcaacctgccgtacaggaaataccggccgcaa
ttccacgtgcacaccaacgcctacatatggtggcagtatgtgattatgggcatcatggag
gtggacgtgaagccacggctgcacatgtggtcgtggcagcgcatccaccgccaccggcag
acagtcaagtgttacagagcgctctacaagtccaagatcaccaacaagaagcccactgag
aagctgctcagggaagtggaggagactgagcggactctggatatttttaacatcacgctg
gccaggcagcaagctgagatggaggcgagcaaggcgggtctgcgtatctttcgtccgggg
gtgaaggtggaggaggaatctcagggctggttgggctggatgtggtccggctggtcagga
gatgacggcgccaagtccaaggaggtcaagaccggagcttttggtgagcttatgactcct
gccgagaaggccaaactctacaccgccattggctacagtgaggtagctgtcaatcacaac
ctgccaaagaactttgaggacataaagatacattttcacatgaagaggatgtctttctca
atgaaagacaacaaggatcagaatgaaatcctcaaggtcacagttgaagacctgaaatcc
atgctgacccagaggcccggagcacaagccattaagctgtcggcccagcttagtctgttt
gaggtgaaaggactggccaataatcgtccggcgcccacgctgctgtcgtcgaggaaggct
gccacggtaacagggacccccctgcttgacatcctgtttgagaccaaccctctggatgag
agtgctgaccagcggctccacgtcgagtcccagcctctggagatcatctatgacgctgtg
acggtgaacagcatgtctgcgttcttcttgccgcctgatgacctccagctagacgagctg
accaacgccactctcatgaagctggaacagttccgagaccgcacctccacagggctgatg
tacgtgattgagacccagaaggttctggatctgaacgtcaacctcatggcctcctacgtg
atcgtgccccaaaccggcttctacgactccactcagaacctcatgctattggacctgggt
cacttcaaggtgtctagtctgagcagaaaggggctaccccagctctctgtagggagcagg
actatacaggacatcatgtcccaagcctacgacagcttcaacatcaagctcagcagccta
cagttcctctacagcaaaccagacggggactggaggaaagcccgtaagctgaagcaatcg
gccctccacatcctggagcctgttgatgtcaaggtggtgttcagcagagccatggtggtc
acagactcacgcatgcccaagtttaagatcttcggggagatgcctctcttgtctctgagg
atctctgatgataaggtgcgggccgtgctggagctgattaacagcatcccgctgccggag
agcaggccggccccgcgcagcaccaacacacactctacacctaaggctccaaagcagtcg
tacacccctcagctaacccccaggcaaccaaccatgtctgaactgcgcaactccctcata
tgggaatcaggctcagaggaggacctgttctacgatgctcccagctctcctataggcgac
agtccgttcttccccgacaacatgcccagccccctgcaacgctccgactcggtcaagaag
agaggtctggtcaagaaagaccccaagaagaacatgacagagttcctcatgacgtttgag
atcaacaagctgtctgttcagctgtgtcgtctgtctagaggccaggaggtcacagtgtta
cacctggacgtcgagcgtctcggcaccgagctaaagattcgcaccttcgacatgacatct
aacacctttctacgcgagatctgcctagagtgctcagagtatatggattcagaggagaag
aaagtgcacctgatcacaactctagacaacacagaggaggacctcctcacattggagtac
acaaaggctgataagaacgggccagaattcaagtctcagtacaagaacactgaacaaaca
gtaaaggtgaacttctcatctctggatgtacacctgcacacggaggctttgctcaacgcc
atgaacttcctgaacagcctcctccccccgaccaaggaggcggtgcctagcaaggaggag
cttcccaaaatcgcagaggaggacgagggagagggggaggagggagagggggatgagggc
gagaaggaggaatcggccgtggcaaaaagaacatcttctaagaagtcaaagtttgaggac
gtggtgaatttgcacatcagagctgatctcaactgtctgaaggttttcatccgaggccat
agccacatgatagcagagatctgcattgagggcctggtgtcggaggtgctgatgaggaga
aaggcggtggaggttctggccaacctgaagaacatagtcatcctggactgtgataaggag
gcactgtacaagcagtgtgtgtccatagctgataaggaggtgtttgctttccgcatggtg
aaccacacggacgccactgagggcgatgcctatctagacatgggtaaagtggacaccagc
atcaccctgacagtgggctgcatccaggtcatcttcctcaacaagtttgtctcctccatc
ctggctttcatcaacaatttccaggtggccaaggaggccctggctgaggtgacggtgcag
gcagcggaaaaggcagccacaggggtgatggagctggctgagcgcagcgtgcgcatctct
ctggatgtagacttcaaagctcctcttgtcttcctgccgcagtcgtcctcctccaccaac
gtcactgtggctgacctcggtatggtcacggtcaagaactgctttgccttggtcgactcc
cagacgcatgtcaagatccctcccatcatcgacaccatgaccgtggtcctcagtgacctg
aagatgtacagaaccacctttgagaaggggagatttcagggggagatccaggttctgaag
ccggtcaacctggacctgtccatccagaggaacctgtcagcctcctggtaccacagcatc
cctgacataaagatcactgcccacctcaaacctatgaatctgatcctgagtcaggatgac
atgacggtggtgttgaggactctgggtgagaacatgtcagagacgtcagacgctgcttcc
tctcgtcctcctccgtctacagtggatcactccgacactgccactaccaaaggctcgcag
ggcacaggaggtactggtactatctccaccagcggaaacatagtggtaactgctgcagtg
gtcgagacccagaagagcactaagctgaagaacatactcaaagtagacttcaagtttgac
tccatgactctggtcctgtacagccccaatgggactgaggtgcaggtgttggactccagg
gatgatcagctgatgctggctgagttcaccttgggaacaatctctacatctgtccacatg
ttctcagacggatccatgaaggcctccgtcaaactcacagactgcctgctagacgacaag
agacgcagagtcaagaatatcactgccaggatgatggcgattcgtccgagcgctgagagg
aacgtgatggtggaggtgaactacaatcaggggcgtgaaggcacctctctggagacggtg
gtgcaggatgtctacctctgtgccagcatggagttcctgctaaccgtggccgacatcttc
ctcaaggccagccaacaaggtttctcctcagccgcccccaagaacagcagcactaaaccc
acagttacagccaccaccgctttcaaggaacctgctccagtggcagtcaagtcggagatg
aatgttctggtgaagaacccagagattgtctttgtggctgacctgacgcgtgccgacgcc
ccagccctggtcatgaccatggagtgcgagctggtgatgaagagcaacccggatggtcag
ctgatgacggcagtggtcaaggaactgaaggtagtggcctgccccttcctgagggagaag
aggaggaacaaggagaccactgtgctgcagccctgccaggtgttcttcaagagcgcccag
tcctccacctccccgcaggccatggaggtctccatcaaggcactgacactcaaggtgtcg
cccatcatcatcaacacagtaatcaccatccagtcggtgctgagcccggccggtgcagac
atgccccagtcggagctggagagccccgtgcccccagacctgtgggagcgccggtcctgg
cgggatctcaagctgtggttcctggaggaggagggtaaagacgaggatgcccagtccctg
gtccggctgattccccagggtgagtccctgcaggtggccatttcctccatctgcctgacc
ctggaggcaggggtgggccaccgtaccgtccccatgctgctggccaagtcctccttccac
ggggacgtcaagaactggagcaccctcatcaacctgcacagccagctcaacctggaggtt
cactacttcaacgaggtgatggggttgtgggagcctctgctggagcccctagaggacgat
atcagagacggcttcagatcctggactctgggattaaagatgaagaagaagccagtaaaa
tactcaggtatatcagatgaagtagactacagcatcccagattacaagactatcatcagc
atcagcagcaaggaccagctcaacatcaccctctccaagtgtggactgggcatgctcagt
aacctgggaacggcctttgcggaggcggccaagcagacatcagagagtttccaggaggac
gaggcgccgttcgtggtgaagaaccgtctgggtctgactgtgtcagtggtgtacagtgag
atgttctgccccctgggctgtgaggccacagaaaaccgtgtagagctgcagaacggagag
agtgtcaacatggactatcgtcgcaccaccacccactcagaccagttctctgccatgacc
tcgctggtggccaaggactactacatacagcccactccggcgggccacacttcagccagc
atgattccgttgattaaagtggggcgtggtatgtacagtgtcatgcacaaagtctctggg
gtcacccgcttcctggtctgtcagatctactctgtgcagggaagcaagcacatcaagatc
cgctctcccttccagatcataaaccacttttccatcccgttcagagtgatggagggctcc
atgtgtctggggatgtcattacctacagaggagttctgcgtgcctctcgactcctacagg
tcaaagttgagcctgcagccggtaaccgaaggagacaatcaatatgattcttccgagggc
ttcagctacgagtcagtgagtcagcagcctggcgcacgtgtacagcagacctgtcatcga
catggcaacagcgccagcgtgctaatggtcaacatcgtacctctgaaagacacagtgaca
tcacaacacactggagtggccggggagcactttgatgagccctacatcctgcacctgtgg
ccctccgtcctgctccggaaccttctaccctaccccatcacctatcgcctacaggatagt
gaagagcccgcccccatcacattgatggacggccactcagcagagcttcacaccgccgtc
atggacctgtcaagcctggaactccgcctcctcaactacctggggcaggattggaaggcc
cactatggtctccgtggcgaccaggacgagatcaccttcattgtgttccactccctgcgc
gatgaagatgaggaggttaggttaggggagggtggagaaaggaagcgggcagagctggac
attgcggtgcatgtgaagtacgatgcgggcctgactgaggtggccatccattctccctac
tggatggtgaataagacgggtcgcctgctacaatacaaggccgacgacatccaccgcaaa
cacgccatggactatgacatgcccctgctcttctccttcaagccacgcaactttctgcac
aacaacaaggtgcggctgatgatctcggacagcgagctgtctgatgatttctccctggat
accgtgggtagctatggtgaagtgaagtgcaaagggaggctcaaagattacctgatcggg
gtgaagattgaccgcagcagtttcagcctgacccgtatcgtgagctttgtgccatactac
ctgttggtgaacaggaccaagcatgtgatctgggtgggagaggagggccaggaacactgg
accaaggccaaaccacaccaggcagccatcccattctggcccgagaaggactccaagaag
ctcaaaatcaaggtagaaggctgtcagtcaacccctcaaaccatggacttcaccaaacca
gaaaactgcctgttgctgcacctagacaacactctgggcggagtcattgtggacgtgaac
ctatcagaccactcgatcattatccgtttttcggactaccacgatggagccgcccccttc
ctcatcatcaaccacaccctggagcagacgctggagttctaccagagattgcggagagac
tcgtcaaaatgcttggcagacgagctgctcaaactctccttctcactagaggagacccag
cgcagcagtcagaaggagaaggacaagctgagcccggggaaggcggtgtactatacctgg
gctgagcccaccgggtcacgctccctggcctggcagtgtggtagctacagtggcgagctg
aagagtgaagaggacctgcggttggacgtgaatgaggagggtaagctgtacctcatctca
ttctacgagggcctccagcgggtggcgctgttcaccgaggacaggcggatctacaagctg
ctgtgtgagagtgagaaggccgagctggctgaacaggagatcatcctctccctgcaagac
gtgggtgtctccctggtcaacaacagcaaccaccaggaggtgtccttcattggcattacc
ggttcagacgtggtgtgggagttcaagccaaagaagaagtctcgctggaaacccctgagt
tttaaatatgcagcgctgctggagacccacttcagagagtacaccgagagtggatcagtg
gacaacgccatcttagacctggagagcaacttccaggtgtctctgacgccaaataggcaa
gacatgaggatgatgaagccatgtgatgctccaatcaggaggaacttccttccgggggtg
aaggtggagtacagcgtatcggcccgccagagtgcctaccgtgtccagatcaaccgcata
cagatccaaaatcagctgcctggagcaatctttccctatgtcttctacccaataaaacta
ccaaagtctgtcaccatggactcagagcccaaacctctgaccgacatcagcattgttacc
agggcagccggacactcagatatctcccgcatcaagtatttcatggtgctgatccaggag
atggacttgaagttggacctgggtttcctctacgccatcttggatctgttcaccccggag
aatgccagcgtgatgacatcagagcagatggtggagttgtttgagaaggacattaagtat
ctgaagactgagctgaacaacatctcagccgctgacacgtcccctatcagtctctatgag
tacttccacatctctcccatcaagttgcacctgagtttgtctttgagttctggaggagag
gatggtaataaggagaagagggagactgaggtcatccctgtccaatccctcaatctgctg
ctgaagagcatcggagcaaccctcactgatgtgcaggacgtcgtcttcaaattggcctat
ttcgagctgacattccagtttcgcactcgccagcaactacaatgggaggtcatcagacac
tactcgaagcaggcgataaagcagatgtatgtgctggtattgggcttggacgtgctggga
aacccctttggactgatccgaggtctgtctgagggagtggaggctttcttctatgagccc
tatcagggagctatccagggaccagaggagtttgtggagggtatggcactgggggtgaag
gcactggttggaggagcagtggggggcattgcgggcgctgcctccaggataacaggcgcc
atggcgaagggtgtggctgccatgacgatggatgaggaataccagcagaagagacgagag
gctatgaacaagcagcccagcggcctgagagagggcctgactcgtggaggcaaaggactg
gtttctggcttcgtcagtgggatcacagggattgtcaccatgcccattagaggtgctcag
aaggagggtgcggcaggcttctttaagggtgtcgggaaggggctggtgggggctgtggcc
agacccacaggaggtatcatcgacatggccagcagcactttccagggcatcaagagggcg
gctgagacgtcccaggatgtggagagtctgcgtccgcctcgcttcattcacgaggacggg
gtcatccgaccatataaggagagagaaggcattggcagccagatgctacagaaaattgag
aatggacagttcgccaagtacagatactttgctcacgccaaagtaaacgagtcagatttc
ttgatgatcaccaaaagtggaatctttttcgtgaccaaaggcacatttgggcagcttacc
tgtgagtggcagtatctgtttgacgagttcaccaagaagcccatgatcgtggaggggagg
aggcttcggatagaggcaaaggagagagtaaagtctgtgtttcatgccaaagagtttggg
aagattataaacttcaaaagtccagaaatagccaagtgggttcttaccaagctggaggac
gccagggagaatctacacaagtactga
DBGET
integrated database retrieval system
