Oncorhynchus tshawytscha (Chinook salmon): 112249527
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Entry
112249527 CDS
T05605
Symbol
abca2
Name
(RefSeq) ATP-binding cassette sub-family A member 2
KO
K05642
ATP-binding cassette, subfamily A (ABC1), member 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw02010
ABC transporters
otw04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112249527 (abca2)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
112249527 (abca2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
otw02000
]
112249527 (abca2)
Transporters [BR:
otw02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
112249527 (abca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DUF4162
Motif
Other DBs
NCBI-GeneID:
112249527
NCBI-ProteinID:
XP_042176685
UniProt:
A0AAZ3REU3
LinkDB
All DBs
Position
LG04:complement(42485298..42564794)
Genome browser
AA seq
2534 aa
AA seq
DB search
MGFLHQLQLLLWKNVSLKRRGPWVLAFEIFIPLVLFFILLGLRQKKPAIPVKEAFYSAAP
LTSAGIIPIMQSLCPDGQRDEFGFLQYKNSTVTQLLERIREVVLQNHLFTADRPGLGQEL
ESLQQHLESLSTSAGPYPLDNNFNTSQGFTVASVLKNQSVFHQFLVRNLSLPNDTASLLL
STPVNLKEVFNLIFGLYPRTGGGSSHSSGGEKETTHTPAEKILQLEEKMLGVMQSLDGGL
IHKALRDPTKAAHRQALLKLMSQALGLAGGGAGQRYDPQGLKEVEGVLLTGAMLEMLTCG
EDGTSELSKILLFPEKQQSLLQAYRSAACGGGAGQRTERFGEMSQELREQIDTQSLIDKL
RLEPANSSAPLSQSHLGALLKDLADVEKLLRDVDLLSGLARLLPKGACAGHVPPGAPANT
TTSWSLNATTWGPNTTENPWEEGGEEGRGREKENVKEENPHSFSTFVQLWAGLQPILCGN
NRIIEPEALKQGNMSSLGFTSKEQRNLGLLVHLMTTNPKILYSPIGSQVDKVIQKANETF
AFVGNVTHYARVWLNISAQLRTYLEEGKLHHHLAWMQQLTSDLRGHPELLNGTDSDLLRG
LLEGNYTLPNTSTLLEQLDTIDNAACGWTHFMSKVSVDIFKGFPDEDSIVNYTLNQAYHD
NISVFASVIFQTNLDGSLPPHVLYKIRQNSSFTEKTNEIRRAYWRPGPNTGGKFYFLYGF
VWIQDMMERAIINTFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVISWVYSV
AMMIQHIVAEKEHRLKEVMKMMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGRVLLH
SDIFIIWLFLSIYAIATIMFCFLVSVIYSKAKLASACGGIIYFLSYVPYMYVAIREEVAH
DKITAFEKCIASLMSTTAFGLGSKYFALYEVAGVGIQWRTINQSPVEGDDFNLGLSMMML
IIDASVYGVLTWYIEAVHPGMYGLPRPWYFPLQKSYWLGSGRVETWECPWGGGARLSVME
EDQACAMEHRRSEEMRGIEEEPSHLPLVVCIDKLTKVYKMGNKLALNKLSLNLHENQVVS
FLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTDMERIRQNLGMCPQHNVLFDKLSV
EEHLWFYSKLKGMAEEDIRKEMDKMIDDLELNNKRHSLVQTLSGGMKRKLSVAIAFVGGS
RAVILDEPTAGVDPYARRAIWDLILKYKQGRTILLSTHHMDEADLLGDRIAIISHGKLKC
CGSPLFLKSTYGDGYKLTLVKKQSESGDQVTQPQPPSTVSPSSSSLSPSSSSLSPCSETR
VTQFIRQFVGSCLLVSDSNTELSYVLPSEAVKKGCFERLFQALEQNLAILALTSFGVMDT
TLEEVFLKVSEEDQSLENSDADMKDSLGGISVGKPAAAVGVGGSGKPEPGAPAGSSSSVE
RPEVELSNLVMCSRLSQSQSSLCSSSSLGSVLGDEEGLYTDFYGDYCRLFDNGRDPHSTS
LREDVEEASPEPVVLEGQGSFKLEGWWLKLRQFHGLIVKRFHCAKRNTKGLFSQILLPAF
FVCVAMTVALSVPSIGDLPPLILSPSQYHNYTQPRGNFIPYANEDRPQYRSKLSPDASPQ
KIANTLRLPSGVGATCVLKTPFNSTLDQLAQTLNPSANNSKTLAARYFDSMCLDSFTQGV
PLSNFVPPPPSPAPSDDPDTHFEDGLWNFTATTPTTVRETVTSPPTLPLFIRELVRCICS
MQGTGFSCPSGVGGRPPLMKVVTGDILVDITGRNVSEYLLYTSDRLRLHRYGGLTVGNIQ
KSVPASFGKKTPPMVRKIAVRRSAQVLFNNKGYHSMPTYLNVLNNAILRANLPPGKGNPA
AYGITLTNHPMNRTSASLSLDYLLQGTDVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKH
LQFVSGCDPVIYWLANYIWDMLNYLVPATCCVLILFVFDLPAYTSPTNFPAVLSLFLLYG
WSITPIMYPASFCFEVPSTAYVFLIVINLFIGITATVATFLLQLFEHDKDLKLVNSYLKS
CFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQFDKIKSPFEWDIVTRGLVAMTIEGFVGF
FITILCQYNFLRKPLRVPVSSQLIEDDDVDVACERRRVLRGDADNDMLKIDNLTKVYKSR
KMGRILAVDRLCLGVRPGECFGLLGVNGAGKTTTFKMLTGDESTTGGEAFIGGNSILREL
LRVQQSIGYCPQFDALFEDLTAREHLELYTRLRGIPWKDEQRVVSWALEKLELSKYADKP
AGTYSGGNKRKLSTAIALIGYPSLIFLDEPTTGMDPKARRFLWNLILDVIKTGRSVVLTS
HSMEECEALCTRLGIMVNGRFKCLGSIQHLKNRFGDGYMITVRTRTSSNVKEVVRFFNRN
FPEAVLKERHHTKVQFQLKSDRISLAQVFSKMEQVVGVLGIEDYSVSQTTLDNVFVNFAK
KQSDNLEQQESSPPGGGQSPLQRLLNLLRPRPANTELSALVSEEQEELESDDDEGLISFE
EERVQLSFNTDTVC
NT seq
7605 nt
NT seq
+upstream
nt +downstream
nt
atgggattcctccaccagttacagcttctgttgtggaagaatgtttctttgaagaggaga
ggaccgtgggtgttggcctttgagatcttcatccctctggtcctcttcttcatcctgctg
ggcctgcgccagaagaaacctgccatccccgtcaaggaagccttctacagcgcagctccc
ctcacctcagcaggcatcattcccatcatgcagtctctgtgccccgatggccagagggac
gagtttggattcctacagtacaagaactccactgtcacccagttgttggagcggatccgt
gaggtggtgttacagaaccacctgttcacagcagacaggccaggactgggccaggagctg
gagtccctacagcaacacctggagagtctcagcacatcagcagggccctacccactggac
aacaatttcaacaccagccaagggttcacagtagccagtgtgttgaagaaccagtcagtg
ttccatcagttcctggtcaggaatctgtccctccccaatgacaccgccagcctgctgctc
tccactcctgtcaacctcaaagaggtattcaacctgatctttggcctgtaccccagaact
ggaggggggagtagtcacagttctggaggggaaaaagagaccacacatacccctgcagag
aagatacttcaactggaggagaagatgctgggagtcatgcaaagtctggatggtggactg
atccacaaagctttacgagacccaaccaaagcagcccatcggcaggccctactcaaactc
atgtcccaggctttaggcctagcaggaggaggggcaggccagagatatgacccccaggga
ctgaaggaggtggagggcgttctcctgactggtgccatgttggaaatgcttacctgtggg
gaggatgggactagtgagctgagcaagatcctattgtttcctgagaagcagcagtccctg
ctccaggcctatcgcagtgcagcatgtggaggtggggcgggacaaaggactgagcgcttt
ggagagatgagccaggagctccgagagcagatagacacacagagcctcattgacaagctg
cgtctggagccagccaactcctcggcccctctgtcccagtcccacctgggtgctctgctg
aaggacttggctgacgtggagaagctcctcagggatgtagacctgctgtcaggcctggct
cgcctgctccccaagggggcctgtgctggccacgtcccccctggggctccagccaacacc
accacttcctggtccctcaacgccaccacttgggggcccaacaccaccgagaacccctgg
gaggagggcggagaggaggggagaggacgagagaaagagaatgtgaaagaagagaaccct
cactcgttttctacctttgtgcagctgtgggcagggctgcagcctattctgtgtgggaac
aacagaatcattgagccagaggctttaaagcaagggaatatgagctctctgggctttacc
agtaaagagcagcgcaatctgggcttactagtgcatctgatgactacaaatcccaagatc
ctctactcccccatcggttcacaggtggacaaagtcattcagaaggccaatgagacattt
gcgtttgtggggaacgtgactcactacgcccgggtgtggctcaacatctctgcccagctc
aggacttatctggaggagggcaagctgcaccaccacctggcctggatgcagcagttgacc
tctgacctacgtggtcacccggaactgctgaatgggacagacagtgatctgctgcgtggg
ttgctggagggcaactacaccctgcccaacacctccaccctgctggagcagctggacacc
attgacaacgccgcctgtggctggacacacttcatgtccaaggtcagtgtggatatcttc
aagggttttccggatgaggacagcatcgtcaactacacactgaaccaagcttaccatgat
aacatctcagtgtttgccagtgtgatattccagaccaacctagatggctccctgcctcct
catgtcctctataagatcaggcagaactccagcttcacagagaaaaccaacgagatccgc
cgggcctactggcgcccagggcccaacacggggggaaagttctattttctctacggcttt
gtgtggatccaggatatgatggagagagccatcattaacacgtttgtgggccatgacgtg
gtggagcctggcaactatgttcagatgttcccttacccctgctacacaagagacgacttc
ctgtttgtgatcgagcacatgatgcctctgtgcatggtgatctcctgggtctactctgta
gccatgatgatccaacacattgtggcggagaaggagcaccggctcaaagaggtgatgaag
atgatgggcctgaacaacgcggtccactgggtggcctggttcatcactgggtttgtccag
ttgtccatctcagtgacggccctgacggccatcctgaagtacggtcgggtgctcctccac
agcgacatcttcatcatctggctcttcctctccatctacgccatcgccaccattatgttc
tgcttcctggtgtcagtgatctactccaaggccaagctggcgtcagcgtgtggtgggata
atctacttcctcagctatgtcccatacatgtacgtggccatcagggaggaggtggcccat
gacaagatcacggccttcgagaagtgtatcgcttctcttatgtcgaccacagcgttcggc
ctgggctctaagtactttgccctgtacgaggtggctggggttggaatccagtggcgcacc
atcaaccagtcacctgtagagggcgatgacttcaaccttggcctgtccatgatgatgctc
atcatcgatgctagtgtgtatggagtactcacctggtacatagaggctgtgcatccaggg
atgtatgggctgcctcggccgtggtacttccccctgcagaagtcctattggctgggcagt
gggcgtgtggagacatgggagtgtccctgggggggaggggccaggctgagtgtcatggag
gaggaccaggcgtgtgccatggaacaccggcgatctgaggagatgcgtggtattgaagag
gagcccagccacctgcctctggtggtttgtatagacaagctgaccaaggtctacaagatg
ggcaataagctggccctcaacaagctgagcctcaacctccacgagaaccaggtggtgtcc
ttcctgggacacaacggagccggcaagaccaccaccatgtctattctgacaggtctgttc
ccgcccacctctggctcagccaccatctacggccatgacatccgtactgacatggagcgt
atcaggcagaacctgggcatgtgcccccagcacaatgtgctctttgacaagctcagcgtg
gaggagcacctgtggttctactccaaactcaaaggcatggccgaggaggacatccgcaag
gagatggacaagatgatagacgatctagagttgaataataagcgtcacagcctggtgcag
actctgtctgggggaatgaagaggaagctgtccgtggccatagcgtttgtgggcggctcc
cgggccgtcatcctggatgagcctacggcgggggtggacccctacgcacgcagagccatc
tgggacctcatcctcaagtacaaacagggtcgcaccatcctgctgtccacccaccacatg
gatgaggctgacctgttaggagaccgcatagccatcatctcccatgggaaactcaagtgc
tgcggctccccactctttctcaagagcacctacggagacggctacaaactcaccctggtc
aagaaacagagtgagagcggggaccaggtcacccagccccagcctccctccaccgtgtcc
ccttcctcctcctccctgtccccctcctcctcctccctttctccctgctcagagacccgg
gtcacccagttcattcgtcagtttgtggggtcctgtctgctggtgtctgactccaacact
gaactatcctatgtgttgccctctgaggctgtcaagaagggctgcttcgagaggctattt
caggcattggagcaaaatctggccatcttggctctgaccagcttcggagtgatggacacc
actctggaggaggtcttcctcaaggtgtcggaggaggaccagtccctggagaacagtgat
gccgacatgaaggattccctaggcggtatctcagtggggaaacctgctgctgcagtgggt
gtgggaggctctggaaagccagagccgggggctcctgcggggagcagcagcagtgtggag
aggccagaggtagagctctctaacctggtgatgtgctccaggctcagccagagccaatcc
tccctgtgctcctcctcctccctggggtccgtgctgggggatgaggaagggctctacaca
gacttctacggagactactgccgcctcttcgacaacggacgggaccctcactctaccagc
ctgagggaggacgtggaggaggcctcccctgagcctgtggtcctggaggggcagggcagc
ttcaagctggagggctggtggctgaagctacgccagttccacggcctcatcgtcaagagg
ttccactgtgccaagaggaacaccaagggcctcttctcacagatcctgctgcccgcgttc
ttcgtctgcgtggccatgactgtagcactctctgtgccttccatcggagatctgccacca
ctgatcctgtccccatcccagtaccacaactacacccagccccgtggcaacttcatcccc
tacgccaacgaagaccgcccacagtacaggagtaaactgtccccggatgccagccctcag
aagatcgccaacacgctgcgtctgccatcgggcgtgggcgccacctgcgtcctcaaaacg
cccttcaacagcaccctggaccagctggcacagacgctcaaccccagcgccaacaacagc
aagaccctggccgcccgctactttgactccatgtgtctggactccttcacccagggagtg
ccactgtccaacttcgtaccccctcccccctcgccagccccctccgatgaccccgacact
cactttgaggatgggctgtggaacttcactgccaccactcccaccactgtcagggaaacg
gtgacgtctcctcccaccctgcccctgttcattcgggagctggttcgttgtatctgctcc
atgcaggggacgggcttctcctgccccagcggggtgggggggcggccgccccttatgaag
gtggtcaccggggacattctggtagacattactgggcgcaatgtgtcagagtatctcctc
tacacctctgacagactgcgcctgcacagatatggaggactcacagtaggcaacatacag
aaatcagtcccagcatcctttgggaaaaagactccgcccatggttcgcaaaatagcagtc
cgccgatcagctcaggtgctgttcaataataaagggtaccacagcatgccaacctatctc
aacgtcctcaacaatgccatcctgcgtgccaacctgcctccaggcaagggcaaccctgct
gcatacggaatcacactgaccaaccaccccatgaaccgtaccagtgcaagcctctctctg
gactacttgctccagggcactgatgtggtgatagctatcttcatcatcgtggccatgtcc
tttgtaccagccagctttgtggtctttctggtggcagagaagtcgaccaaggccaagcac
ctgcagtttgtgtctggatgtgaccctgtcatatactggctggctaactatatatgggac
atgttgaactacttggtgcctgccacgtgctgtgtccttatcctgtttgtctttgacctt
cctgcgtacacatccccaaccaacttccctgcggtcctgtctctcttcctcctctatggg
tggtctatcactcctatcatgtacccggcctccttctgtttcgaggtgcccagcacggcc
tatgtgttcctcatcgtcatcaaccttttcataggcatcactgccacagtggccaccttc
ctgctgcagctctttgagcatgacaaggatctgaaactggtgaacagctacctaaagtcc
tgtttccttatcttcccaaactacaacctgggtcacggcctgatggaaatggcctacaac
gaatacatcaatgagtactatgctaaaataggtcagtttgacaagatcaagtctcccttt
gagtgggacattgtgactcgagggctggtagccatgacaatcgagggctttgtaggattc
ttcatcaccatcctgtgtcagtacaacttcctcaggaaacccttgagagtaccagtgagc
agccagctcatagaggatgatgatgtggatgtggcctgtgagagacggagagtactgaga
ggagatgctgacaacgacatgctgaagattgacaacctcaccaaggtgtacaagtcgagg
aagatgggtcgtatcttggctgttgaccggttgtgtctgggcgtgcgtcctggggagtgt
tttggcctcctgggggtgaacggagcagggaagaccaccacctttaagatgctgactggt
gacgagagcaccacgggaggggaggccttcatagggggaaacagtatcctgagggagctg
ttgagagtgcagcagagcattggttactgccctcagtttgatgccttgtttgaagacctg
acagccagagagcacctggagctgtacacacgcctccgaggcatcccctggaaggacgag
cagagggtggtctcgtgggccctagagaaactggagctctccaagtatgcagacaagcct
gctggcacctacagtgggggaaacaagcgcaagctgtctactgccatcgccctcatcgga
tacccctctctcatcttcctggatgaacctactacagggatggaccctaaggcccgcaga
ttcctctggaacctcatccttgatgtcatcaagacgggacgctctgtggtgctgacgtca
cacagtatggaggaatgtgaggctctgtgcaccagactgggcatcatggtcaacggcagg
ttcaaatgcctgggcagcatccagcacctcaagaacaggtttggtgatggttacatgatc
acagtgcggactagaaccagttccaatgtgaaggaggtggtgagattcttcaacaggaat
ttccctgaggctgtactaaaggagcgccaccacaccaaagtccagttccagctgaagtcc
gacaggatctccctggcccaggtgttcagtaagatggagcaggtggtgggggtgctgggg
atagaggactactctgtcagccagaccacactggacaatgtgttcgtgaactttgccaag
aagcaaagtgacaacctggagcagcaggagagttccccccctggtggaggccagtcaccc
ctgcagcgcctgctcaacctgctgaggccccggccagccaatacagagctcagcgccctg
gtcagcgaagagcaggaggaactggagagtgatgacgatgagggcctcatcagctttgaa
gaggagagggtgcagctctcctttaacacagatactgtctgttga
DBGET
integrated database retrieval system
