Oncorhynchus tshawytscha (Chinook salmon): 112249567
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Entry
112249567 CDS
T05605
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112249567
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
112249567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_16
TPR_CcmH_CycH
TPR_8
TPR_12
TPR_17
TPR_10
TPR_11
TPR_7
TPR_6
ARM_TT21_5th
TPR_Slam
ARM_TT21_4th
ANAPC3
TPR_EMC2
Motif
Other DBs
NCBI-GeneID:
112249567
NCBI-ProteinID:
XP_042176951
LinkDB
All DBs
Position
LG04:62393664..62403052
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AA seq
1149 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQTKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKELITQATLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSTNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMGHCFVKLSKLEKARLAFGRALELNSKCVGALVGLAV
LELNSKEPDSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSTFVLPFFGLGQMYVYRRDKENA
AQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASLER
AKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHK
GYYREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLKKFYKHQNTEVL
LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATLVLKDEKSNLKAVL
SAVKELELAHRYFSYLAKAGDKMRFDLVLASTEARQCSDLLSQAQYHVARARKQDEEEKE
IRAKQDQERDFLRQQMHKEQEEKRTKQEEDQKKLLEQRAMYVEKTKGLLSFADGMKEERK
EKKKGGGRRKKGGDFDEFVNDGSDEDLPVRRRKKRKGGSGSEEEGRKKRRRPNKGGDDGS
DDEEGGSRPKKQRKPRAGGKKFQRAEPVPPSLKGKIKSKAIISSSDSSSDEDGLKIAEDR
NPRDSGSGSDNEGSHKKRIASDSESDGGRNRSGSDAGSPQRSENSGSDSGSDRPVKRKSV
QQSDSEQSDNESKRSRSGSENESRPGSPAAASGSEAGSPAGSPRRSDNGSEPGGSANEAS
NHGSGSDSD
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggggttcaattgaaatccccttacgggacaccgacgaggttattgagcttgat
ttcgaccagttgccagaaggagatgaggtcatcagtatcctgaaacaggagcatacacag
ttgcacatatggattgctcttgctctggagtattacaaacagacgaagacggaggacttt
gtcaagctgctggaggcggcccgtatcgatgggaacctggactacagagaccatgagaag
gaccagatgacctgtctggacaccttggcagcctactatgttcagcaggcacgtaaagag
aagaacaaagatgccaagaaggagctcatcactcaggccaccctgctctacactatggca
gacaagatcatcatgtacgaccagaaccacttgttgggaagagcctgtttctgtctgctg
gagggagacaaaatggaccaggctgacgctcagttccactttgtcttgaatcagtccacc
aataacatccctgctctacttggtaaagcttgcatctccttcaataagaaggattacagg
ggagcactggcctactacaagaaggctctacgcacaaaccctggatgtcctgccgaagtg
aggctggggatgggccactgctttgtcaagctcagtaagctggagaaggcccgtctggcc
tttggccgggccctggagctcaactccaagtgtgtgggagcccttgtgggcttggctgtg
ctggagctcaacagcaaggagcccgactccatcaagaatggagtgcagctcttatccaga
gcatacaccatcgaccccagcaaccccatggtgctcaaccacctggctaaccacttcttc
ttcaaaaaggactacagtaaagtgcagcacctggctctccatgcctttcacaacacagag
gtggaagctatgcaggctgagagctgctaccagttggcccgctcctttcatgtacaagag
gactatgaccaggccttccagtactattaccaggccacccagtttgcctcgtctaccttt
gtgctgcctttctttggcctggggcagatgtacgtgtaccgtagagacaaggagaatgca
gcccagtgctttgagaaggtcctaaaggcctaccccaacaactatgaaaccatgaagatc
ctgggctctctttatgctacttcagatgatcaggaaaagagagacattgccaaaggtcat
ttgaagaaggtgaccgagcagtaccctgatgacgtggaggcttggatcgagctggcccag
atcctggagcagaccgacatccagggcgccctctctgcctacggcacggccacccgcatt
ctgcaggagaaggtccaggctgacgtcccccctgagatcctcaacaacctgggggctctc
cacttcagactggggaacctgggagaggccaagaaatacttcctggcctctttggagcgg
gccaaagctgagggagagcatgacgagcattactacaacgccatctctgtcaccacctct
tacaacctagccaggctctacgaggccatgtgcgaattccacgaggcggagaaactctac
aagaacatcctgagggaacatcccaactacgttgactgttacctgcgtcttggtgcaatg
gctcgtgacaaaggaaacttctatgaagcttccgactggttcaaagaggctctgcagatt
aatcaggatcacccagacgcctggtccctgatcgggaatctccacttggccaagcaggag
tggggtccgggtcagaagaagtttgagcgtatcctcaagcagccgtccactcagaacgac
acctactccatgctggccctgggcaacgtgtggctccagaccctgcaccagcccactagg
gaccgggagaaggaaaagagacatcaggatcgagccctggccatttacaaacaggtccta
cgaaacgactccaagaatctttacgctgccaacggcataggtgccgtcctggcccataag
ggctactaccgagaggcccgtgacgtgtttgcccaggtgagagaagccacagctgatatc
agcgacgtctggctcaacctggcccacatctacgtggagcagaaacagtacatcagcgct
gtgcagatgtacgagaactgtctgaagaaattctacaagcatcagaacactgaggtgctg
ctgtacctggctcgggcactcttcaaatgcgggaaactccaggagtgcaaacagactctg
ctgaaggcgcgtcacgtggcccccagtgacacggtgctgatgttcaacgtggccctggtg
ctgcagaggctggccactctggtgctgaaggacgagaagagtaacctaaaggctgtactc
agtgctgtcaaagagctggagctggcccaccggtatttcagctaccttgccaaggctggt
gacaagatgaggtttgacctagtgcttgcttccactgaggccaggcaatgctctgacctg
ctgagtcaggcccagtaccacgtggctcgggccaggaagcaggacgaggaggagaaggag
atccgggccaaacaggatcaggagagggacttcctgcgccaacagatgcataaagaacag
gaggagaagagaaccaagcaggaagaggatcagaagaagctgctggagcagagagccatg
tatgtggagaagaccaagggtctgctctccttcgctgatggaatgaaggaggaaaggaaa
gagaagaagaaaggtggtggccgacgcaagaaagggggtgactttgatgagtttgtcaac
gatggctctgatgaggacctgccagtgagaaggaggaagaagaggaagggtggcagcgga
agtgaggaggagggccgcaagaagaggaggagacccaacaaagggggtgacgatggcagc
gatgacgaggaaggaggctcacggcccaaaaagcaacgcaaacccagagcgggcggcaag
aagttccaaagggccgagcctgtgccaccgtctctcaaaggcaagatcaagtcgaaagcc
atcatctcatcctctgactcttcatcagacgaggatggactgaaaattgctgaagaccga
aaccccagggacagtggttcaggctctgataatgagggcagccacaagaagcgcatcgcc
tccgacagtgagtccgacgggggccggaaccgctctggcagtgacgctggaagcccccaa
cgctccgaaaactctggtagcgactcaggcagtgaccgtccagtgaagaggaagagtgtg
cagcagtctgactcagagcagtctgataacgagagcaagaggagccgctctgggtcggag
aacgagtcccggccaggctcaccggccgcagcctctggctctgaagcgggctctccggcg
ggctccccacgccgctccgacaatggatcagaaccagggggctctgccaacgaggcctcc
aaccacggctctggctctgacagcgactga
DBGET
integrated database retrieval system
