Oncorhynchus tshawytscha (Chinook salmon): 112249571
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Entry
112249571 CDS
T05605
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112249571
04091 Lectins [BR:
otw04091
]
112249571
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
112249571
Lectins [BR:
otw04091
]
C-Type lectins
Others
112249571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
SUEL_Lectin
Ion_trans
Lectin_C
GPS
Pectinesterase
Motif
Other DBs
NCBI-GeneID:
112249571
NCBI-ProteinID:
XP_024275138
LinkDB
All DBs
Position
LG04:63029531..63057538
Genome browser
AA seq
2159 aa
AA seq
DB search
MDSTKLSVLLLNAFLLCLSCAEDEIAPLSCPEYQESFDGSCYEFVGPPRSRSFLSAQGWC
ERGGGHLAFILNDETQQFLQKHLQMEQDWWLGLAPASPNLTLDSAAAEGPLSWLDGSDVS
YSNWVNDPDPGAGCGHILRSSGFQWEATSNCSQELHFICQFESGRSIACAAHNATLQCGS
GQVIEIDDSFYGRKTVHYCRTSPTSSATSTQEECSWIDVVDSVTGDCHGLQACQAMADVA
SFGEPCPGLGSYLSVEYNCKDGLHLLMSKLAAVFDNVSITVKWLLHPFQGNLTCTLSAGD
GHNIDPYSPEELESSVVHKYTRPGVFIVGVECTTSEWHVTAQKAITIQEPIGEFGVIKCY
SMNQSTDGANCKALYGSPLQIQVEVESGTNVTYKVHRGEMLVANSSAVRGIVPHNITMGP
EVEQQLGSGCHQLTLHASNGVSVLGVSTELQVCLLEPVEGLQGSVMAEEGECPDSDLYVS
VSLDRGSPVKLLFQVSGANDSISETRDMQNRSMQVYNISTTIQGDLQVKVRAWNVFSHMD
VDVGNTAAVWPANSSSSVENLQSVVENTVAQLEQQGLLTGETLGQMFKSVSDILNKGSSE
DQKGAREELREQMLSTMTAVLKNVPNNTPQEVQLTARAVAGITKRREEVNSAAQLEASSL
VAELSSSLLYMNVSEHGGQEMVQAATPIVEAASNILGVSSNASTQRKVSKTLLNSMDNVQ
SALLNGKKVGQEPAIIKSPEISVYANRMSPNSIQMQSINIPDSSSASFSFPPLGADVLSP
EEPVDVRMLSFEKNPYSWSEGGNISGAMASVTLTRQDGSAIPVENLSEEIEILLPRLEGG
QVNSTILELGNYSTLMIDVPSPDITLVLKMEPSEDIPFVLLLGYKDYPKDKQYVAKTQMP
HQGNSQERYTWVLGPNDLTGKVGVHYLVVRPIVEAGVKSVNATMTVTSIAAQCKYWNETL
STWSEDGCRVGPLTTSLVTQCLCNHLTFFGSSFFIMPNLVDVSRTTELFATFSDNPVVVC
FVGAIFIAYLLVVVWARRKDIKDIAKVKVTLLEDNDPLAEYRYMLNISTGHRRGASTSSQ
VTVTLLGTEGESEPHHLADPDKPVFERGAVDTFLLTTPFSLGELQSIRLWHDNSGGHPAW
YINKVTVQDLETGQKWHFLCNSWLAIDMGECILDKVFPVASDIDLKKFSNLFFMKTAKDF
RDGHIWFSVISRPPTSTFTCVQRVSCCFSLLLCTMLTSIMFWGIPTDPSEQTMDLGHIEF
TWQQVMIGVQSSIIMFPINLLIVSIFRNTRPRETKPGKPKAEVSKQGKTGRVTPSQPPSP
QRERELTPDTVIKDIKKIAQSLSKAMKSPIPHLELEMKPGQQTDINSLLSLVEDIIRQQN
RASGEFYTDASKKEGSLILSLEVANLQETSLCGSPEKTGDGRQKRINNSQYLYRQLRHVE
KELSLLGPSRFPNPDSYCRAVQQVQGMRGLLESHLSSSSLGGDQLSQSPSPAESSEGDSS
SKKQGGLPWWFVFIGWILVLATSGVSGYFTMMYGLTYGKDRSISWLISMVVSFFESLFIT
QPLKVLGFAAFFALVLKKVDQEEYGDAKFEGELRNPDDPDVVRAVRRDSTCSFYQPPPPT
DIERMRSNMIKEQKVFALIKEILTYMGFMWMLLLVAYGQRDPNAYFLTQHIRQSFSQGIS
DSMSHKDVFTWANTALLSNLFGEYPGFITDGNSKLVGNARLRQVRVQKNSCRIARSMRQA
VPDCHAPYSWEVEDMGSYGPGWNRSASENASKTLHSPWQYQTQARLRAQPTWGSVVLYKG
GGFVVDLGPESQNASSTLQYLFDNTWLDMFTRAVFVEFTVYNANVNLFCTVTLMLETTAV
GAFQFRSELQSVRLYQSTGGLHIFVMASEVIYFLFILYYMYVQGKLMKLQKWAYFKTKWN
LLELAIILLSWSALSVFIKRTLLGNRDMEYYHNHKDQFASFHETATADAVLGYLIAFLVL
LATVKLWHLLRLNPKLHMITATLQRAWTDISGFLVVITIMFLAYSIASYLMYGWKLYSYR
TLLDAALTMVSLQLGIFNYDEVLDYNPVLGAFLIGSCIIFMTFVVLNLFISVILVAFTQE
QIHHKPSEEEEIVDLMLMKLCSLFGIKMMKKEEKEDSDNPKENGMTASATNKGFSTISS
NT seq
6480 nt
NT seq
+upstream
nt +downstream
nt
atggacagcactaagctctctgttttactcttgaatgctttcctcttatgcctgtcttgt
gctgaggatgagatagcacctctatcctgcccagagtaccaagagagctttgacggctcc
tgttatgagtttgtgggtccacctcgttcgcgttccttcctcagtgcacagggttggtgt
gagcgaggtggtggacacctggccttcattttaaacgacgaaacccagcagttcctacag
aagcacctgcagatggagcaggactggtggctgggtctggcacctgcctccccaaaccta
acactggactctgctgctgctgagggtcctctctcctggcttgatggctctgatgtcagc
tactctaactgggtgaacgaccctgatccaggggctggctgtggtcacatactgaggagc
tcagggtttcagtgggaggcaacaagcaactgtagccaggagctgcacttcatctgccaa
tttgaatctgggcgctccattgcttgtgctgcccacaatgcaacactacagtgtggttct
ggtcaggtgatagagattgatgacagcttctatggtcgtaagacggttcactactgccgg
acgagtcccacttcttcagccacctccacacaggaggagtgtagctggatagatgttgta
gattcagtgacaggagactgccatgggctgcaggcgtgccaagccatggcagatgtggcc
tcttttggtgaaccatgcccagggcttggaagctacctgtctgtggaatacaactgcaaa
gatggtctccacttattaatgagcaagttggctgccgtctttgacaatgtctccataaca
gtgaagtggcttctccatcccttccagggcaacctgacctgcactctaagtgctggagat
gggcacaacattgatccttatagtccagaagagttggagagcagtgtggttcataaatac
acccgtccgggtgtcttcatagttggggtggagtgtaccaccagtgagtggcatgtgaca
gctcagaaagcaatcaccattcaggagcccatcggggagtttggcgtcattaagtgctat
agcatgaaccaatcaacagatggagcaaactgcaaggccctgtatggtagtccccttcaa
atccaggttgaagtagaatctggtacgaatgtgacctacaaagtccaccgtggtgagatg
ttggtggccaattcatcagcagtcagaggaatcgtcccccacaacatcacaatgggacca
gaggtggagcaacaactgggctctggctgccaccagctgaccctgcatgcctctaacggg
gtctcggtcttgggcgtgtccactgagctgcaggtgtgtctgctggagcctgtggagggc
ctgcagggatcagtgatggctgaggagggagagtgtccagactcagacctctacgttagt
gtctccctggaccgggggtccccggtgaagcttctcttccaggtgtctggagccaacgac
agcatctccgagaccagagacatgcaaaacagaagcatgcaggtttacaatatctcaacc
actatccaaggagatttgcaagtgaaagtcagggcctggaatgtcttctcacacatggac
gtggatgtggggaacacagcagcagtgtggccagccaactccagttcctcagtggagaat
ctgcagtctgtggttgagaacactgtcgctcagctagagcagcaggggttgctcactggg
gagaccctaggacagatgttcaagtctgtgtctgacattctgaacaagggctccagtgag
gatcagaaaggtgccagggaggagctgcgagaacagatgctgagcaccatgactgcagtg
ctgaagaatgtccccaacaacactcctcaggaagtgcagctgacggccagagcagtggca
gggatcaccaagaggagggaagaggtcaattccgctgctcagctagaagctagctccctg
gtggcagagctcagctcttccctcctctatatgaatgtcagtgagcatggtggacaagag
atggtgcaggcagctacaccaattgtagaggcagccagcaatatcctgggagtctcttca
aatgcaagcacacagagaaaggtctcaaagactctcctgaacagtatggacaatgtgcag
agtgcactgttaaatggtaaaaaggttggccaggagcctgccattatcaagagccctgag
atcagtgtgtatgctaacaggatgtctccaaatagcattcagatgcagtctataaacatc
ccagatagctcctctgcaagcttttccttccctcccctgggtgctgatgtcctttctcca
gaggaaccagtggatgtgcgaatgctgagttttgagaagaacccttattcttggagtgag
gggggtaacatcagtggtgccatggcgtctgtgacactcaccagacaggatggatcagcc
atccctgtggagaacctgtctgaggaaattgagatcctcttgccgagacttgaaggcggg
caggtaaacagcacaatccttgaactgggaaactacagcacactgatgattgacgtccct
tcaccagacataacactggtgctaaagatggagccctcagaggacataccatttgtactg
ttgctggggtataaagactacccaaaggacaagcaatatgtagccaagacgcagatgcct
catcaaggcaattcacaagagagatacacctgggtcctgggtcccaatgatttgacagga
aaagttggggtgcattaccttgtggtgaggcccattgtagaagcaggggttaaatctgtc
aatgccactatgactgtcacctccattgctgctcagtgcaagtattggaatgaaacctta
tccacctggagtgaagatggctgcagggttggtcctttaaccacgtcattggtcactcaa
tgcttatgtaaccatttgaccttcttcgggagctctttcttcatcatgcccaaccttgtg
gatgtgtcccgtaccactgagctctttgccaccttctcagacaaccctgtggtggtgtgc
tttgttggtgccatcttcattgcttatctcttggtggtcgtgtgggcacgcaggaaggac
atcaaggacatagccaaggtgaaggtaacattgttggaagataatgaccccttggctgaa
taccgttacatgctgaatatcagcactgggcatcggcgtggtgcttccacctcctctcag
gttactgtgactctgctgggcacggagggagagagtgagccacaccacctcgctgaccct
gacaagcctgtgtttgagaggggggcagtggatacgttcctgttgaccacacccttctct
ctgggggagctgcaaagcatcaggctgtggcacgacaactcaggggggcaccctgcctgg
tatataaacaaagtgacggtgcaggatctagaaactggacagaagtggcacttcctgtgt
aactcatggctggccatagatatgggcgagtgcatccttgataaagtcttccctgttgcc
tctgacatagatttgaagaaattcagtaatctgttcttcatgaaaacggcaaaggatttc
cgtgatggccacatctggttttctgtgattagccggcctccaacgagcaccttcacatgt
gtccagcgagtctcctgctgtttctctctgctgctgtgtaccatgctgaccagcatcatg
ttctggggcatccctaccgacccctctgagcagaccatggacctgggtcatatcgagttc
acctggcagcaggtgatgatcggcgttcagagttcaatcataatgtttccaattaatctc
ctcattgtgagtatcttcagaaacacccgcccccgagagacgaagcctggaaagcccaag
gcagaggtatccaagcaggggaagactggcagagtgactccttcacagcctccgtcccca
cagagggagagagaactcacaccagacactgtcataaaggacataaagaagattgctcag
tcactctccaaggctatgaagagccccattccacacctggagttagagatgaagcctgga
caacaaactgatatcaactctctgctctctctggtggaggacatcatccggcagcagaac
agagccagtggagagttctacactgatgcctccaagaaagagggatcgctcattctctca
ctagaggtagccaatctgcaagagaccagcctgtgtgggagccctgagaagactggggat
gggagacagaaaaggatcaacaacagccaatatctgtacaggcagctacgccatgtagag
aaggagctgagcctactgggaccttctcgcttccccaacccagacagctactgccgggca
gtgcagcaggtccaaggcatgaggggtctgctagagtcccacctctcctcttccagcctg
ggaggggaccagctgtctcaaagccccagcccagcagagagcagtgagggagacagcagt
agtaagaagcagggcgggctgccctggtggtttgtgtttattggctggattctggtgtta
gccaccagcggagtatcaggatacttcaccatgatgtatgggttgacctatgggaaggac
cgctctataagctggctcatctccatggtcgtgtctttctttgagagcctctttatcact
cagccgctgaaggtgcttggttttgcagccttctttgctctcgttctaaagaaagttgat
caggaggagtatggggatgcaaagtttgagggggagctccgaaacccagatgaccctgat
gtggtgcgggctgtcaggagggatagcacatgcagcttctaccagccccctcctccaaca
gacatcgagaggatgaggagcaacatgatcaaggagcagaaggtctttgccctcatcaaa
gagattctcacctacatggggttcatgtggatgttgctcctggtggcatatggccagcgg
gaccctaatgcttacttcctgactcagcacattcggcagagtttcagccaagggatctca
gacagcatgagtcacaaagatgtgttcacctgggcaaataccgctcttctcagcaacctc
ttcggagagtacccaggtttcatcactgatgggaactccaaactggttggtaatgcccga
cttcgccaggtgagggtgcagaagaactcctgccgcatcgcccgctccatgcgccaggct
gtacctgactgccatgctccatactcatgggaggtggaggacatgggctcctatgggcca
ggctggaaccgctctgcgagcgaaaacgcctcaaagaccctccacagtccctggcagtac
caaacccaggccagactcagagcccaacccacctggggcagtgtggtcctctacaaggga
ggggggtttgtggtggacctgggcccagagtcacagaatgctagcagtacccttcagtat
ctgtttgacaacacctggcttgatatgttcacccgagcagtctttgtagagttcacagtg
tacaatgccaatgtcaacctcttctgcactgtcacactcatgctggagaccacagctgta
ggagcgttccagtttcgcagtgagctgcagagtgtccgactataccagtccaccggtgga
ctccatatctttgtcatggcatctgaggtcatctatttcctctttatcctctactatatg
tatgttcagggaaagctgatgaagctgcagaagtgggcttacttcaagacaaagtggaac
ctgctggagctcgccatcatcctcctgagctggagcgcgctgtctgtcttcattaagagg
accctgttagggaaccgggacatggagtactaccacaaccataaagaccagtttgccagt
ttccatgagacagccacagcagatgcagtgctggggtatctgatcgcattcctggtgcta
ctggctacagtcaaactgtggcatctgctgaggctcaaccccaagctacacatgatcaca
gccacactgcaacgggcctggactgacatatcaggcttcctcgtggtcatcaccattatg
ttcctggcctattctatcgcttcttatctaatgtatggctggaagctgtactcatatagg
actctcctggatgctgctctgaccatggtcagcttacaactgggcatcttcaactatgat
gaggttcttgattacaacccggtgcttggtgcgttcctcatcggctcctgcattatattc
atgacctttgtggttttaaacctgttcatctcagtcatcctggtggcgttcactcaagag
caaatacatcacaagccctcagaggaggaggagatagtggatctgatgctgatgaagctc
tgcagcttgtttggaatcaaaatgatgaagaaggaggagaaagaagacagtgacaacccc
aaggagaatggcatgactgcctcagcaactaacaaaggattctccactatatcctcatag
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integrated database retrieval system
