Oncorhynchus tshawytscha (Chinook salmon): 112249876
Help
Entry
112249876 CDS
T05605
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
otw04148
Efferocytosis
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112249876
04148 Efferocytosis
112249876
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112249876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112249876
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
112249876
Hops complex
112249876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
Vps39_2
zf-RING_16
zf-RING_11
zf-C3HC4_2
DUF5600
DUF2175
DUF1664
zf-ANAPC11
zf-rbx1
zf-RING_UBOX
Apolipoprotein
DUF2229
zf-C3H2C3
DUF4446
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
112249876
NCBI-ProteinID:
XP_042177345
LinkDB
All DBs
Position
LG05:complement(7905476..7935046)
Genome browser
AA seq
984 aa
AA seq
DB search
MSSILDEYEDSLNSRHPVQHSSRLSAANIGMTHSGFVNVRLEEEKPIFNKQRIDFSPPEK
INHFAVCNNQLCMSLGKDTLLRIDLAKPDRPNQVELGRKEDSRVHKLFLDPTGSHLVISL
STSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLRTETNTGPILVGTSQGIIFEAEISA
SEGSLFNTNPDQYFKQVHSLEEDGRPAPVCCIEVERGPESKVVIIATTRKRLFQFVGRVA
EGSEQQGFSAIFSQNQELLPSFQEFPFNMGYSEITFYTPKLRSCPKAFAWMMGNGVLYGQ
LDYVKLDSLLSDVQVWDYTPDIDFSFNKPISIVLTQFHFLLLLPDRVKAICTLNGQVVYE
DVFPDKFGTLKKMIKDPAGGLVWIYTEKAVFRYHIQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDMVLAKEAEHCFQDKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKK
LNNLKQSEKTQITLLVTWLTELYLNCLGLLQSDEGKHGVFQETRDEFRKFLSSSKHKECL
YNNRTTIYDLLASHGNVDDMVYFSVIMQDYERVISHHCQHDDYSAALEVLSKHCDEKLFY
KFSPILMQHIPKKVVDAWIQMGSRLEPKKLIPALVNYSQMGSTQQVNETIRYMEFCVYQL
TVTEEAIHNYLLSLYAKYKPDSLLWYLEQAGSHLSDIHYDLKYALRLCAEHGYLQACVLV
YKIMELYEEAVDLALQVDVDLAKTCADLPEDDEELRKKLWLKIACHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIDELKQEMEEATESAKRIRED
IQEMRNKYGVVENQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQEVTPHLSTYKQTKLD
ELQKKLAAATQTSKSRHRPAPKEEGGDTASLGKGSAGVSREQIKSDIDDIIACECVYCGE
LMIKSIDKPFIDPQKFEEEKSSWL
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctatcctggatgaatacgaggactcgctgaacagcaggcaccctgtgcaacac
agtagccgcctgtctgctgccaacatcggcatgacacactccgggttcgtgaatgtgaga
ctggaggaggagaagccgatattcaacaaacagaggattgatttctcacccccagagaag
atcaaccactttgctgtgtgcaacaatcagctatgcatgagtttagggaaggacacgctg
ctgaggattgaccttgctaaaccagaccggcccaaccaggtagaactggggaggaaggag
gacagcagagtacacaagctcttcctggaccccacagggtcccatctggtgatttctctc
agtaccagcgagtgtctgtatctgaacaggaacacccagaaggtgaggtctctgtcccgc
tggagaggacacctcatagagagtgtaggctggaacaagctgctgaggacagagaccaac
actgggcccatcctagtgggaaccagccagggaattatcttcgaggctgagatctctgct
tcagagggaagcctgtttaacaccaaccccgaccagtacttcaaacaggtccactccctg
gaggaggacgggaggcctgctcctgtgtgctgtatagaggtggaacgaggtcccgagtct
aaagtcgtcatcatcgccaccaccaggaagcgtttgttccagttcgtaggtcgtgtggcg
gaggggtcagagcagcaaggcttcagcgccatcttctcacagaaccaggagcttctgccc
agcttccaggagtttccgtttaacatgggctacagtgagatcaccttctacacccccaag
ctcaggtcgtgccccaaggccttcgcatggatgatgggtaacggagttctctacggtcag
ctggactacgtcaagctggactcgctgctcagtgatgtgcaggtgtgggactacacccca
gacatagacttcagtttcaacaagcccatctccatcgtgttgactcagttccactttcta
ctcctcctcccagaccgcgtcaaagccatctgcaccctcaacgggcaggtggtgtacgag
gatgtgttccctgataagttcggcactctgaagaagatgattaaggacccagcaggaggc
ctggtgtggatctacactgagaaggccgtctttagataccacatccagagagaagccagg
gatgtgtggcagatgtacatgagcatgaacaagtttgacctggctaaggagtactgccgg
gaccggccagagtgcatggacatggtcctggctaaagaggcagaacactgcttccaggac
aaacgttacctggagagcgctaagtgctacgctctgacccagaactactttgaggagatt
gcgttgaagttcatcgaggcgaaacaggaagaagctctgaaagagttccttctgaagaaa
ctcaacaatctgaagcagagtgagaagacccagatcaccttactggtcacctggctgact
gagctctacctgaactgcctggggcttctccaatcagatgaggggaaacatggggtgttc
caggagacgcgtgatgagttccggaagttcctcagtagttccaaacacaaggagtgtctc
tataacaaccgaacgaccatctatgacctgctggctagccacggcaacgtggacgacatg
gtctacttctctgtcatcatgcaggactatgagagggtgatctcccaccactgtcagcat
gatgactacagcgccgccctggaggtgctctctaagcactgcgacgagaagctcttctat
aagttttccccaatcctcatgcaacacatacctaagaaggtggtggacgcctggatccag
atgggttccaggctggaacctaagaaactgatcccagccctggtcaactacagtcagatg
ggctcaacacaacaggtcaacgagaccatccggtacatggagttctgtgtctaccagctc
actgtgaccgaagaggccatacacaactacctgctgtccctctatgccaagtacaaacct
gatagtctcttgtggtacctggaacaggctgggtcccacttgtcagacatccactatgat
ttaaagtatgccctgaggctgtgtgctgaacatggttacctccaggcctgtgttctggtc
tataagatcatggagctgtatgaagaagctgtcgatctggccctacaagtggatgtggac
ttggccaagacgtgtgctgacctgcctgaggatgacgaagagttgaggaagaagttgtgg
ctgaagatcgcctgtcacgtggtgcaagaggagaaggatgtgaagaaggccatgaactgt
ctgtccagctgtaacctgctcaagatcgaagacatactgcccttcttcccggactttgtc
accatagaccacttcaaggaggctatctgcagctctttagaggagtacaaccagcatata
gacgagctgaagcaggagatggaggaggcgacggagagcgccaagcggatcagagaggat
atccaggagatgaggaacaagtacggggtggtggagaaccaggagaaatgtgctgcctgc
gacttccccctcctcaacagacccttctatctgttcctctgtggtcacatgttccactac
gactgccttttccaggaggtgacccctcacctgtccacctacaagcagactaaactagat
gagctgcagaagaagttggctgcagccactcagacctccaagtctcgccaccgccccgcc
cccaaggaggaggggggcgacaccgccagcctggggaaaggaagcgccggggtcagccga
gagcagatcaagtccgacatcgatgacatcatcgcctgcgagtgcgtgtactgcggcgag
ctgatgatcaagtcgatcgacaaaccgtttattgatccacagaagtttgaggaggagaag
tccagctggctctga
DBGET
integrated database retrieval system
