Oncorhynchus tshawytscha (Chinook salmon): 112249945
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Entry
112249945 CDS
T05605
Symbol
capn3b
Name
(RefSeq) calpain-3b isoform X1
KO
K08573
calpain-3 [EC:
3.4.22.54
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112249945 (capn3b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112249945 (capn3b)
Enzymes [BR:
otw01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.54 calpain-3
112249945 (capn3b)
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C2: calpain family
112249945 (capn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
Calpain_u2
EF-hand_1
EF-hand_6
EF-hand_7
CAPN13-like_C_EFh
EF-hand_5
EF-hand_8
Motif
Other DBs
NCBI-GeneID:
112249945
NCBI-ProteinID:
XP_042177438
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All DBs
Position
LG05:complement(12894796..12927849)
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AA seq
768 aa
AA seq
DB search
MALVEETSVKVALETEASPDVPEGKTDYPFTASNSIYTAILSRNEAVKDAKRLKNFLELR
DKYVHKKVLFEDPLFPPNDSSLWYSSKFPIEFEWKRPTEICDNPQFIIDGASRTDICQGE
LGDCWLLAAIACLTLNDKLLYRVIPSDQSFTENYAGIFHFQFWRYGEWVDVVVDDRIPTS
NNQLVFTKSFRKNEFWSALLEKAYAKLHGSYEALKGGNTLEAMEDFTGGVTEFFEMSEAP
KELYKIMKKALERGSLMGCSIDALLPSHCETETANGLVRGHAYSITALEECDKLKVTKDT
KIRLVQMRNPWGMVLWKGPWNAKSKEWSTISSSDKARLKKKTVETSETWISFEDFKKNFT
KLEICNLTPDTLLDDRSHSWTVAVNEGRWVRGSSAGGCRNFPDTFWTNPQYRMRLYEEDD
DPDDPEHVACTVMVALMQKGRRKDRSKGAKLYTIGFSIYEVPKEMIGSQQHLQKDFFLYN
ASKAKCKSYINLREVSERFCLPPGEYVIIPSTFDPHEEGEFILRVFSEKNSTSEETENTI
RSDHIEQGKNRTKKGKPIVFVSDRAKANKEIEQDDIEVQKEKKEKPKPQQPDEESGEHKM
FRAIYQQIAGEDMQICANELKVVMKRVLEKHNDMKTDGFSLESCRSMIALMDTDGTGKLN
LQEFKHLWSKIKAWQLIFKKYDKDKSSTISSFEMRNAVNDAGFRLNNQLYDIITMRYADE
HLNIDFDSFICCFVRLEGMFRTFHAFDKNGDGTIKLNVLEWLQLTMYA
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggcccttgttgaggaaacgtcagtgaaggtggcgttggaaactgaggcatcacctgat
gtacctgagggtaagactgactaccccttcacggccagcaacagtatctacactgccatt
ttgagcagaaacgaggccgtcaaagatgccaagcgcctgaagaacttcttggaattgcga
gacaaatacgtacacaagaaagtcctgtttgaagaccctctgttcccacccaatgattcc
tctctttggtacagcagcaaatttcccattgaatttgagtggaagcgcccaacggaaatc
tgtgacaacccccagttcatcatagacggagctagtaggacagacatctgtcaaggagag
ctgggtgactgctggctgcttgctgctattgcctgtctgacactgaatgacaagctgctg
tacagagttatcccatcagaccagagtttcacagagaactacgctggtatcttccatttc
cagttctggcgttatggcgaatgggtggacgtcgtggtggacgaccgtatccccacctcc
aataaccagctggtgttcaccaagtccttcaggaagaacgagttctggagcgctctgctg
gagaaggcttacgccaagttgcacggttcctacgaggccctgaaaggtggcaacaccctg
gaggccatggaggatttcactgggggtgtgacagagttctttgagatgtccgaggctcca
aaagaactctacaagatcatgaagaaagccctggagagaggctctctgatgggctgttcc
atagacgccttgctgccaagtcactgtgagactgaaactgcgaatggactggtcagaggc
catgcctactctatcactgcactagaggagtgtgacaagcttaaggttaccaaggatacc
aagattcgcctagttcaaatgcggaacccctggggaatggtgctatggaaagggccgtgg
aatgccaagtccaaagaatggtccaccatctccagctcagacaaggccaggctgaagaag
aagacggttgagacgagcgagacttggatatcctttgaggacttcaaaaagaacttcacc
aagctggagatctgtaacctgacccctgacacacttctggacgacaggtcccatagctgg
acggtggcggtcaacgagggccgctgggtacgaggcagctccgccggaggctgcaggaac
ttcccagacacgttctggaccaacccgcagtaccgcatgcgtctgtatgaggaggacgac
gaccccgacgaccccgagcatgtggcgtgcaccgtcatggtggccctgatgcagaagggc
cggaggaaagaccgcagcaagggtgccaagctttacaccatcggattctccatctacgag
gtgcccaaagagatgattgggagccagcagcacctgcagaaagacttcttcctttacaat
gcctccaaggccaaatgcaagtcctacatcaacctgcgtgaggtgagcgagcgattctgc
ctgccccctggggagtacgtgatcatcccttcgacctttgacccccacgaggagggagag
tttatcctcagagtcttctccgagaagaacagcacctcagaggaaactgaaaatacaatt
aggtcagaccatatagagcaaggcaaaaacaggacaaagaaaggaaagcccatcgtgttt
gtatcagacagagcgaaggccaacaaggagattgagcaagatgacatcgaggttcagaag
gagaagaaagagaaaccaaaaccacagcaaccggatgaggagagcggagaacacaaaatg
ttcagggccatttaccagcagattgctggggaggacatgcagatctgtgccaacgagctc
aaggtggtcatgaaaagggtactggaaaaacataatgacatgaagacggacggcttcagc
ttagagagttgccggagcatgatcgctttgatggatacggacggcacaggaaaactgaac
ctgcaggagttcaaacacctgtggagtaagatcaaagcctggcagctgatcttcaagaag
tatgacaaggacaaatccagcaccatcagcagctttgagatgaggaacgcagtcaatgat
gcagggttccgcttaaacaaccagctgtatgacatcatcacaatgcgctacgctgacgag
cacctcaacatcgactttgacagcttcatctgctgcttcgtcaggctagaaggcatgttc
aggacgttccatgcctttgacaaaaacggagacggcacaatcaagctcaacgtcctcgag
tggctccagttgaccatgtatgcttag
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