Oncorhynchus tshawytscha (Chinook salmon): 112249993
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Entry
112249993 CDS
T05605
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112249993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112249993
03021 Transcription machinery [BR:
otw03021
]
112249993
03036 Chromosome and associated proteins [BR:
otw03036
]
112249993
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
ARID
112249993
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112249993
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112249993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
112249993
NCBI-ProteinID:
XP_024275541
LinkDB
All DBs
Position
LG05:complement(15256616..15349065)
Genome browser
AA seq
2250 aa
AA seq
DB search
MAAQVATAPTSTVKKRSSLTSSVSQDFKSAKPGVVGGAVLGVGNGTIVHAINVERNHHEL
NPNRARVFPVNNNSSQREKESGDSRSESFSTSNCSVSSGSMETGTLVSHKVKIVGVGDPP
PPHHHTPPQQQPFNQFIQHQQRQIHNSQQSIHGESGNRQHGGKENVVLGNQVELHQQQQM
LNKSEEEDQPGKTEDRINSRYDHASLGTTNNINPSQSGNSSVLEINNSYYGKGRGGPCFD
QHGGQQSPESGIIHSVQQNNMDQLQQNSHEGYQNNPYNHYPNYRPGYGNSGYGMMSPSRH
GNNMMGPVSNTAAANHSRAAMAAASSSGSANIGGFHRFPGQSQQHPSGATPTLNQLLTSP
SPMMRGYGSGYQDYTNPSAEQQQSSMGLTKDLSSQYGSTTHSWGGQERNHPAMSPGNNGQ
GSGRSQVPPIDAMAMKRSQLYGMGNNPYSQQQQGGGGSYPGQPYGSPSPHRYPMGMPGRG
QMGMSGMQYPQQQQQMAAQYRQQQGGMSGYCQPQGQPPYSSPPQQQPAAPTQPPYMQARP
LPQQEVSQEGYVNRAQSPMTPGKLNHEEMGLSQQDRPSSLPDLSGSIDDLPTGTEVAISS
AVSASGSTSSQGEQSNPAQSPFSPHMSPRLRSGPSPSPVGSPVGSSQSRSGPISPASVPG
TQMAPQTPGNMSDVGSHSTLSQSPMSQERGFPPAMQRNTTVPQQSVQGPAMSPHSSPGGS
MHPQSSYHQQQLQGGPGPSYGPQASQYGPQGNYPRPPNYGGTPSANYSGPGPGMSNSLGM
NANSPMHGQGPGQPCGSMPAGRGLGPGASGRPHLGANTNTMAPTSPSMPQPAGQGMRPPL
PSVNQEAGLGLGTNAMQGPNAGPNPSAQGRPPYARSPAYPGLSCPGTCPRLSPHHSPSPH
PHHSPSPHLPHHTQVSSAQSHPMMQQADQYGQGMTPMPHHPGMSPRGMSSNPAGPYSQQP
GANTSGRMTPQGHQPPYNAPSGPMLMGGEGMVCPTDPKPRPPEQYRESNTPGPATEPPPK
PKKTSPATMTNEKIRILYEMGVEPERQVWVDRYLAFMEERGTPVPMLPAVGRKPLDLCRL
YLCVREIGGLAMVNKSKKWRELSTHLNVGTSSSSASSLKKQYIQYLFAYECRVERGEEPP
LEIPGETKKQAKIQPPSPANSGSLQGPHTPQSTGSSSMTEMSEGMKLPTPATTPHVTPQP
GNRNSVGIRVQDPFSEVSDPAFHKRGPMPSGAQYQQVGGCADPSMRMQYDANKDPYEGPR
KGPGGSEPYRPGQMPSGAMQDMYPRGPPSVAMPGMGMGPGPRSQYPYGPGYDRRPDHVMG
SEGGAPPPGGQNNMVPSSGDPSMYSANRYPHQRPHGHESYGQQYPHGPMPYSSHQSGMYP
QQGYKRPVGQEGMYGPPAKRHEGEAYDMQQYGGQQPDMHRQYGGGYMGPEHRPMQGQYPY
PYSRDRMGAIQGPQQHGMMSGGPPFPSGASPDGPQANMWHPRTDMGYPGPYPGRQGQGPP
YPVMGRGPGDDPEGRALQDGQWTSGHPGQRQSPCPSSSSMPPMASRQPPSSYQSNPAMAN
HIARAPSPFARPMGGPGPLSPNNGGHYMASLKKAGMPGSMPGSHSGGMSGQGILPLHRDI
SFPMGSVEATLPKLKVRRRLTSKETGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDT
TVSSFTLSQLPGFLELIVEYFRRSLISIFGILDEYEVGTEGQKMLLGPITDQEEGLTVAE
LDSQLDEEQRDSGPEKTTANSNTEEAVPEEKEEPVEVTLKEKVEGEEKEGAATEQSQPPE
PRPKQASKYDKLPVKVEEDQVEEDQELSLSRGFTSGLLHWKAGGGDSTAHIQTHFEIRGE
ETNSKPTEREDKTQMTEEERKAVVEKSMTETATMDDMLSAWPGSLSERNGLPGTQTQSPI
FTLLEDEPRCWDEAPLSTAEPWQDALARRCVCISNIVRGLSFIPGNDNDMSCHPGLVLIL
GRLVLLHHLHPQRRRMPPSYQREEEQGRACSKDQWWWDCLSALRENTLVTLANISGQLDL
SLYPESICLPILDGLLHWMVCPSAEAQDPFTTASCSSSLTPQRLVLECLCKLSIQDNNVD
LLLATPPFSRQEKLYATLVHHVGERKSQVCREMAVAVLSNLAQGDPTAARAIALQKGSVG
ILIGFLEDCVAMCQHQQGPHSLLHPAAHPQPPSVNMMCRAAKALLAMAKEHRTELVLYES
RLLDISLSSVLSSAVAAIMCEVLFKIGRSS
NT seq
6753 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacaagtggcaacagccccaacatcaactgttaagaaaaggtcgagtttaact
agcagcgtgagtcaagattttaaatctgctaaacctggagtagttggtggagctgtactt
ggggtaggaaacgggactatcgttcatgctattaatgtagaacgcaatcaccatgaattg
aacccaaacagagctcgagtttttcctgtaaacaacaattcgagtcaacgtgagaaggaa
agtggagattctagatcggagtctttttcgacttcaaattgtagcgtgagttcgggaagc
atggagacgggaacgcttgtcagtcataaagtgaaaattgttggtgtcggagatcctcct
ccaccgcaccaccacacacctccacagcaacagccattcaatcaattcattcagcaccaa
caacgccaaattcacaacagccaacagtcgatacatggagaaagtggaaaccgccaacat
ggaggaaaagagaacgttgttttagggaatcaagtggagctccatcagcagcaacaaatg
ctaaataaaagtgaggaggaggaccaaccgggcaaaacggaggaccggattaacagcagg
tacgaccatgccagtttgggaacaactaataacatcaacccgtcccaaagtgggaacagt
tcagttttggagataaataatagttattatggaaagggaagaggagggccttgctttgat
caacatggcggacaacaaagcccagagtctgggataatacattcggtacaacagaacaat
atggatcaacttcaacaaaactcccacgaaggataccaaaacaacccgtacaatcactac
ccgaactaccgacctggctacggtaacagtggatatgggatgatgagtccctctcggcac
gggaacaacatgatgggcccagtcagcaacactgctgctgctaatcatagcagagctgcc
atggctgctgcctcttcttctggtagtgcgaatattggagggtttcacagatttccaggg
caaagtcagcagcatccgtcgggggctaccccgactcttaaccagttactgacgtccccg
agccctatgatgcggggctatggcagtggctatcaagattacactaatccttctgctgaa
caacaacaatcaagcatggggctgactaaagacttgagctcccaatacggttcaacaact
catagttggggaggacaagaaagaaatcaccctgccatgagccctggaaacaacggacaa
ggaagcggcagatcacaggtgccaccaatagacgccatggcaatgaagcgctctcagctg
tacggcatgggcaacaacccttactcccagcaacagcagggcgggggcggctcctaccct
ggccaaccatacggatcgccttctcctcaccgctacccaatgggaatgcctgggaggggt
cagatgggcatgagtggaatgcagtatcctcaacagcagcagcagatggcagctcagtat
aggcagcagcaggggggcatgagtgggtactgccagccacaaggccagcccccgtactcc
agccctccccagcagcagcctgcagcccccacacagcccccctacatgcaggcacgtcca
ctgccacagcaggaggtgtcacaagagggctatgtcaatagggcccaatctcctatgacc
cctgggaagctcaaccatgaggagatgggcctcagccagcaggacagaccctccagtcta
cctgacctgtctgggtctatagatgaccttcccacgggcacagaggtggctatcagctca
gcggtcagtgcttcggggtccaccagcagccagggcgagcaaagtaacccggcccagtct
cccttctcaccccacatgtcccctcgcctgcgtagcggcccctccccctcccccgtgggg
tcacccgtgggatccagccaatcacgctccggaccgatctcccctgccagcgtcccaggt
acccagatggccccacagacccctgggaacatgtctgatgtgggttcccattccaccctg
agccagtcccccatgtctcaggagagagggttcccacctgccatgcagaggaacaccaca
gtcccccagcagtcagttcagggacccgccatgtcccctcactcgtcccccgggggctcc
atgcacccccaaagctcctaccaccagcagcagctgcaggggggccccggcccctcgtac
ggaccccaggccagccagtacggcccccaaggtaactaccccagaccccctaactacggt
gggacccccagtgccaactacagcggccccggccctggcatgagcaacagcctgggcatg
aacgccaatagccccatgcacggccagggccctgggcagccctgtggctccatgcccgcc
gggcgaggcctgggcccgggggccagtgggcgaccccacctcggtgccaataccaacacc
atggcccccacctctcccagcatgccgcagcctgccggccagggcatgagaccgcccctg
cccagtgttaaccaggaggcaggtctgggtctgggaaccaacgccatgcaggggcccaac
gctggtcccaacccttctgcacagggcaggcctccctacgcgcgctcccctgcctacccc
ggcctgagttgtcctgggacgtgccctcgcctctctccccatcactctccctcccctcac
ccccatcactctccttccccccatctcccccaccacacccaggtcagcagtgctcagagc
catcccatgatgcagcaggctgaccagtatgggcagggaatgacccccatgcctcaccat
ccaggcatgagccccagagggatgtcctccaaccctgctggcccctacagccagcagcca
ggggccaacacctctgggaggatgaccccacaggggcaccaacctccctacaacgcaccc
tccgggcccatgcttatgggaggagaggggatggtgtgtcccactgaccccaaaccgaga
cctccagagcagtacagggagagcaatactcctggtcctgccaccgagcccccacctaaa
cccaagaagaccagcccggccaccatgaccaatgagaagattcgcatcctgtacgagatg
ggcgtagagcccgagaggcaggtgtgggtggaccgttacctggccttcatggaggagaga
ggcacgcctgtacctatgctgccagccgtgggcaggaagcccctggatctgtgccgcctc
tacctgtgtgttcgagaaataggaggactggccatggtgaacaagagcaagaagtggagg
gagctgtccacccatctcaacgtgggcacgtccagcagctctgccagctctctgaagaag
cagtacatccagtacctgtttgcctatgagtgcagggtggagcggggagaggagccgccg
ctggagatcccgggggaaaccaagaaacaggctaagatccagccaccctcaccggccaac
tctggctccctgcagggtcctcacaccccccaatctacaggtagcagctccatgactgag
atgtcagagggcatgaagcttcccactcctgccaccacaccacacgtgaccccccagcca
ggtaacaggaacagtgttggtatccgtgtccaggatcccttctcagaggtcagtgaccct
gccttccacaagcgagggcccatgccctctggcgcccaataccagcaggttggcggttgt
gcagacccctccatgaggatgcagtatgacgccaacaaggacccctatgaagggccccgg
aaggggccagggggcagtgagccctatagaccaggtcagatgcccagcggtgccatgcag
gacatgtacccccgtggtcctccctcagtagccatgccagggatgggtatgggccctggc
ccgcggtcacagtacccctacgggcctggctacgacaggagaccagaccatgtgatgggt
tcggaggggggtgcgcctccccctgggggccagaacaacatggtaccttccagcggtgac
ccaagcatgtactctgccaaccgatatccccatcagcggccacatggacatgaaagttat
gggcagcagtaccctcacggccccatgccctatagctctcaccagtctgggatgtaccca
caacagggctataagaggccagtgggacaagaggggatgtacggtccccctgctaagcgc
catgagggtgaagcctacgacatgcagcagtacggagggcagcagccagacatgcaccgc
cagtatggagggggctacatggggccggagcacaggcccatgcagggccagtacccttac
ccctacagccgagaccgcatgggagccatccaggggccccaacaacacggcatgatgagc
ggaggtcctcccttcccctccggagcctctccagatggcccccaggccaacatgtggcac
cccaggacagacatgggctaccccgggccctaccctggccgacagggccaggggccacct
taccctgttatgggccggggtccgggggatgacccagagggaagggccctccaggacggc
caatggacgtccggacacccgggccaacgccagtccccatgcccctcttcctcctccatg
ccccccatggcttcccgacagcccccctcctcctaccagtctaaccctgccatggccaac
cacatcgctagagcccccagccccttcgcccggcccatggggggacccggacccctttcc
cccaacaacgggggccactacatggcctctctgaagaaggcagggatgcctgggtccatg
ccaggctcacacagtggggggatgtcagggcagggcattctacctctccacagagatatc
agcttccccatggggtctgtggaggccaccctgcccaaactcaaggtccgacgcagactt
acttccaaggagaccggaaccccagaggcgtggcgcgtgatgatgtctctgaagtcaggt
ctgctggctgagagcacatgggcgctggacaccatcaacatcctgctgtatgacgacacc
actgtgtcctccttcaccctgtcacagctgcctggcttcctggagctgatagtggagtac
ttccgccggagtctgatctccatctttgggatcctggatgagtacgaggtgggcaccgag
ggccagaagatgctgctcggaccaatcacagaccaggaagaggggcttaccgttgcagag
cttgacagccagttagacgaagagcagagggacagcggtccagagaagaccacagccaac
agcaacacagaggaggcggtcccagaggagaaggaagagcctgtggaggtgactttgaaa
gagaaggtagagggggaggaaaaggagggggccgccaccgagcagtcccagcccccagag
cccaggcccaaacaggccagtaagtacgacaagctgcctgtgaaggtggaggaggaccag
gtggaggaggaccaggagctcagtctgtccagggggttcacctctggcctgctgcactgg
aaggctggaggaggggactccactgcccacatccagacacactttgagatacgtggcgag
gagaccaacagtaagcctacagagagggaggataagacacaaatgacagaggaggagagg
aaggctgttgtagagaagagcatgactgagacagccactatggacgatatgctgagtgcc
tggccaggctctctgtcagagaggaacggtcttcccgggacgcagacccagagccctatc
ttcaccctgctggaggacgagcctcgctgctgggacgaggcgcccctctccacggccgaa
ccctggcaggacgccctggcccgccgctgcgtttgcatctccaacattgtccgcggcctc
tccttcatcccggggaatgacaacgacatgtcctgccaccctggcctggtgctgatcctg
gggcggctggtcctgctgcaccacctgcacccccagaggaggaggatgcctcccagctac
cagagagaggaggagcagggcagggcctgcagtaaagaccagtggtggtgggactgtttg
tcagccctcagggagaacactctggtcaccctggctaacatctcaggtcaactagacctg
tccctctacccagagagcatctgtctgcccatcctggacgggctcctccactggatggtg
tgtccctctgccgaggcccaggaccccttcaccacggcgagctgctcctcctccctcacc
ccccagagactggtgctggagtgcctgtgcaagctgagcatccaggacaacaacgtggac
ctcctgctggccacgccgcctttcagccgccaggagaagctctacgccaccctggtgcac
cacgtgggtgagcggaagtcccaggtgtgccgggagatggcagtggctgtgctctctaac
ctggcgcagggggacccgaccgcggcgcgcgccatcgcactgcagaagggcagcgtgggg
atactcatcggcttcctggaggactgcgtggccatgtgccagcaccagcagggaccccac
agcctgttacacccagcagcacacccccaaccccccagcgttaacatgatgtgcagggcc
gccaaggctctgctggccatggccaaggagcaccggacagagttggttctctacgagagc
aggctactggatatctccctgtcctctgtgctgagctcagccgtggcggccatcatgtgt
gaagtactgtttaagattggacgctcctcgtga
DBGET
integrated database retrieval system
