Oncorhynchus tshawytscha (Chinook salmon): 112250022
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Entry
112250022 CDS
T05605
Name
(RefSeq) cadherin-2-like
KO
K06736
cadherin 2, type 1, N-cadherin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112250022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112250022
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112250022
04090 CD molecules [BR:
otw04090
]
112250022
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
112250022
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Major cadherins
112250022
CD molecules [BR:
otw04090
]
Proteins
112250022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
DUF2304
Cytomega_TRL10
DUF3139
Stevor
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
112250022
NCBI-ProteinID:
XP_024275603
LinkDB
All DBs
Position
LG01:complement(35475437..35564728)
Genome browser
AA seq
925 aa
AA seq
DB search
MFRTLVALLMRLAAVQIAVQGGGAVGSLPWKQGSLPCTRGFSQEEYSVAVDEELREGHAL
LTVRFADCGLGDRVLLEVVDVEDFRLDEDGTVYARHAFRLADRKSALVVRARDLETKEDW
KTHVYLLLRNDGKRETTEHKLIKQVNSSSAAVTQQVREIVFPWHSLVVGDDGSLRRVKRD
WVIPPINVPENSRGQFPEELVRIRSDRDKNSLLRYSVTGPGADQSPTGIFIINPISGQLS
VTKPLDREHISNFHLRAHAVDLNGNQIENPIDIVINVIDMNDNRPEFTHTIYNGSVPEGS
KPGSFVMTVTSLDKDDPKTANGMLRYKIISQNPENPSSNMFTINNKTGGIITVAAGLDRE
KVPQYTLIIQATDMEGNPTYGLSNTATAIIRITDVNDNPPEFTADKFYGEVQENRVNVIV
ANLTVTDKDQPHSAAWSTVYRITAGDPTGRFSIPTDLTTNEGLVTVVKPIDYEVSRSFVL
TVLAENEVSLARGIHLPRQSTATVSVRITDVNESPEFSPNPKVIKLEEGLPGGSLLTTFT
AQDPDRYMQQNIRYAKVFDPANWLKIDPVNGRISTIAVLDRESPYVKNNLYNITFMATDN
GIPPASGTGTLQMYLLDINDNAPRVFPPEVEMCEKPEPNTINITASDPDLTPNAGPFAFE
LAKRPADARRNWTLTRLNGEYAQIRLRIGFLESGIYEVPIIITDSGNLPMSNTSYLQVKV
CQCDHHGDCVDMERIIAAGLGTGAIIAILICIIILLVMVLFFVMWMKRRDKERQAKQLLI
DPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDALETEMVKVGIRRMDERPLHQDHIYP
LRSAAPHPGDIGDFIHEGLKAADNDPTAPPYDSLLVFDYEGSGSTAGSLSSLHSSSSGGD
QDYDYLSDWGPRFRKLADLYGGGDN
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgaaccttagtcgcgctgctgatgcgactggcagctgtgcagattgctgtgcag
ggcggaggggccgtggggtcattgccatggaagcagggatcgttgccgtgcacacgaggc
ttctcccaggaggagtacagtgttgccgtggacgaggagctaagagagggacatgcactc
ctcaccgtgaggttcgcagactgtggcctgggcgacagggttctgttggaggtggttgac
gtggaggacttcaggctggatgaggatggcacggtgtacgcccggcatgccttccgtctt
gccgacaggaagagcgccttggtggtgcgagcgagggatctggagaccaaggaggattgg
aagacgcatgtttacctcctcctccggaacgacggaaagcgagagacgacagaacacaaa
ctcatcaaacaggtgaactccagctctgcagctgtgactcagcaggtgcgagagatcgtg
tttccatggcacagcttggtcgttggggacgatggatctctgaggcgggtgaagagggac
tgggtcattccccccatcaacgtccctgagaactcacgaggacagttccccgaggagcta
gtcaggatccggtcggaccgtgataagaacagtctcctgcgttacagtgtgactggaccc
ggtgctgaccagtctccaaccgggatctttatcatcaaccccatctctggccagctctct
gtgaccaaacccctcgaccgggaacacatctccaacttccatctgcgagcccatgctgtg
gacctgaatgggaaccagatagagaaccccatagacatcgtcatcaacgtcatagacatg
aatgacaacagaccagagtttacacacaccatctacaacggatcagtaccagagggatcc
aaaccagggtcctttgtgatgacagttacgtcactggacaaggatgaccctaaaacagcc
aatgggatgctccgatacaagattatatctcagaatcctgaaaacccctcctccaacatg
ttcacaatcaacaacaagacaggaggaatcatcactgtggctgcagggctagacagagag
aaagttcctcagtacacattaataatccaggctactgacatggaggggaacccaacctat
ggcctgtctaacacagctacggctatcatcaggatcactgacgtcaatgataacccccca
gagtttaccgctgacaaattctatggagaggtgcaggagaaccgtgtgaatgtgatcgta
gctaatctgacagtaacagataaggaccagccccacagtgcagcctggagtactgtgtac
aggatcacagctggagaccccactggacgcttctccatccccactgacctcaccaccaat
gagggactggtcactgtggttaagcctatagactatgaggtgagtcgttccttcgtgctg
acggtactggctgagaacgaggtttccctggcccgtggtatccacctgccccgtcagtcc
accgccaccgtgtctgtacgcatcacagacgtcaacgagagcccagagttctcccccaac
cccaaagtcatcaaactagaggaggggctaccgggcggctcgctactcaccacctttaca
gcacaggaccctgacagatacatgcaacagaacatacggtacgccaaggtgttcgaccct
gctaattggctgaagatagaccctgtaaacgggcggatctccaccatcgctgtactggac
agagagtctccatatgtgaagaataacctctacaacatcaccttcatggccactgacaat
ggcatccccccagccagtggtacaggtacattacagatgtacctgttggacataaatgac
aatgctcctcgtgtcttccctccggaggtggagatgtgtgagaagcctgagcccaacacc
atcaacatcaccgccagtgaccccgatctgacccctaacgccggccccttcgccttcgaa
ctggccaagcggccggcagatgcacgcaggaactggaccctcacacgcctcaatggtgaa
tatgctcagatcaggctgcggataggttttctggagagtggtatctacgaggttcctatc
atcatcacagactcaggcaacctgcccatgtccaatacatcctacctacaggtcaaggtg
tgtcagtgtgatcaccatggagactgcgtggacatggaacgcatcatcgcagcagggctg
ggcactggagccatcatcgcaatcctcatctgtatcatcatactgctagtgatggtgttg
ttctttgtgatgtggatgaagaggagggataaggaacgtcaggccaagcagctgctcatc
gacccagaggacgatgtcagagacaacatactgaagtacgacgaagaaggaggaggagag
gaggaccaggactatgacctgagccagctgcagcagcccgacgccttggagacggaaatg
gtgaaggtggggatccgacgtatggatgagaggcccctacatcaggaccatatatacccc
ctccgttctgctgcaccccaccccggagatataggagacttcatccacgagggtctgaag
gcagctgataatgacccgacagcgcctccctacgacagtcttctggtgtttgactatgag
ggcagtggctccaccgctggctccctcagctcccttcactcctcctcttccggcggagac
caggactacgactacctcagcgactggggcccgcgcttccgcaagctggcagacctctat
ggtggaggggacaactag
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