Oncorhynchus tshawytscha (Chinook salmon): 112250053
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Entry
112250053 CDS
T05605
Name
(RefSeq) collagen alpha-1(X) chain isoform X1
KO
K19479
collagen type X alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
112250053
NCBI-ProteinID:
XP_024275655
UniProt:
A0A8C8FL78
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Position
LG05:18254946..18262653
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AA seq
672 aa
AA seq
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MDLRVTSVLLLLVALAVATPERYYHVQKVAKQQYPTKSHVQRESSEDSGESREAVAGEPG
IPGSPGEPGPMGPPGPPGKSGKGHPGPKGPAGTPGPAGYSAAGKPGNPGAPGKPGSNGMP
GEKGHTGATGAMGPRGSPGSPGSPGPAGQSSAGKPGPHGLPGGMGPRGEPGLKGHPGIPG
LPGQKGEKGVGIHGAPGANGAVGPMGPSGMPGQPGVGKSGATGYPGEPGKSGTPGRDGAP
GAMGLPGPKGHNGNPGVGAPGKSGENGTPGMPGNMGPKGPQGHAGQPGAPGMPGIGKPGA
NGMPGDRGSPGTSGTTGQKGEPGPTGYTGATGATGLTGPAGPQGARGFQGETGIQGLKGD
VGMVGAPGAKGTKGDQGHQGYAGKSGIPGAAGPPGATGATGHQGNKGGQGQTGAPGTPGA
NGLPGAKGHTGTPGGPGKPGENGIPGGRGPVGPSGTAGQPGLKGHPGLPGTPGPAGQMAK
GVSGPMGPPGAPGSRGHNGNPGAMGPPGPPGPPGEMVYHHEKSMPIKSHEIMMPHHEMMK
APMSAFSAVLTRAYPSAGSPIQFNQIIYNGEQHYDSQTGIFSCQVPGLYYFSYHMHVNGA
NALVALYKNGEPIMFSYDEYNKGFLDQLSGSTVLMLNAHDQVYIQVPDEETNGVFAADNV
HCSFSGFLIAST
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggacctcagggtgacaagtgttctcctcctcctggtggccttggccgtggcaacgcca
gagagatattaccatgtacagaaagtagccaagcagcagtatcctaccaagagccatgtc
caaagagaaagctcagaagacagcggggaaagtagagaggctgttgcaggggagccaggt
attccaggatcccctggtgagccaggacctatgggcccccctgggcctcccggcaagagt
ggcaagggacatcccggaccaaagggcccagccgggacccccggacctgctggatactct
gcagctggcaagcctggcaacccaggtgctcctgggaaaccaggtagtaatggcatgcct
ggtgagaagggccatactggcgcaactggcgccatgggtccaagaggatctcccggttcc
cctggaagcccaggacctgctggacaatcttctgctggcaaaccagggccacacggtctg
cccggcggcatggggccaaggggtgagcccggacttaaaggacatccaggtatccctggt
ctgccaggacaaaagggagagaagggagttggtattcatggggcaccaggtgcaaatggt
gcagtgggaccaatgggaccatctggtatgcccggtcaacctggagttggtaagtctggt
gccactggataccccggggagcctggaaagtcaggtactccaggtagggatggagctcca
ggagccatgggtctgccagggccaaagggccacaatggaaaccctggggttggagcacca
ggaaagtcaggtgagaatggcactccaggtatgcctggaaatatgggacctaaaggtccc
cagggacatgctggacaaccaggtgcacctggcatgccaggaattggtaaaccaggagct
aatggcatgccaggagacagagggtcaccaggtacatcaggaaccactggtcaaaaagga
gagccagggccaacaggttacactggggcaacaggtgctactgggcttacgggtccagct
ggtccccagggtgctagaggattccagggagagacaggtattcagggacttaaaggtgat
gtcggcatggtgggagctcctggggcaaagggaaccaagggagatcagggacatcagggt
tatgcagggaagtcaggtatccccggggcagcaggacctcctggtgcaacaggtgctaca
ggacatcagggtaataagggaggtcagggccaaactggcgctccaggtactccaggtgca
aatgggcttccaggagcaaagggacacacaggcacacctggaggacctgggaaaccaggc
gagaacggtatcccagggggaagaggaccagtggggccttcaggtacagcaggtcaacca
ggtcttaagggtcacccaggtcttcccggtacacccggcccagctggccagatggcgaag
ggagtttctggtcccatgggtccacctggagctcctggttccagaggtcacaatggtaac
ccaggtgctatgggacctcctggcccacctggtccccctggtgagatggtctaccatcat
gagaagagcatgcccataaagtcccatgagattatgatgcctcatcatgagatgatgaag
gcccccatgtctgccttcagcgctgttctgactagggcttacccttcagcgggatcacct
attcagttcaaccagattatttacaatggtgagcagcactatgattcccagactggcatc
ttctcctgccaggtaccaggtctctattatttctcctaccatatgcatgttaatggtgct
aatgcattggtggcactgtacaaaaatggtgagccaatcatgttctcatacgatgaatac
aataagggcttcttggatcagttgtctggcagcactgtccttatgctgaatgcccatgac
caagtctacattcaggtccctgatgaggagaccaatggtgtcttcgctgccgacaatgtt
cactgctctttctctgggttcctgattgcttcaacgtga
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