Oncorhynchus tshawytscha (Chinook salmon): 112250157
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Entry
112250157 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: afadin-like
KO
K05702
afadin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04520
Adherens junction
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
112250157
04530 Tight junction
112250157
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
PDZ_2
ASPP1-2_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
112250157
NCBI-ProteinID:
XP_042177616
LinkDB
All DBs
Position
LG05:complement(21979630..22102547)
Genome browser
AA seq
1831 aa
AA seq
DB search
MSGSREEERRKLADIINHWNANRLDLFEISQPTEDLEFHGVMRFYFQDRVAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGERKLDLDEKPLVVQLNWNKDD
REGRFVLKNENDIIPKKAQSNGPEREKEGVIQNFKRTLSKKEKKKEKKREKEAHISDGDE
QALSREDGENSRLAAEVYKDMPENSFTRTISNPEVVMKRRRQQKLEKRMQEFRSSDGRPD
SGGTLRIYADSLKPNIPYKTILLSTTDMADFAVVEALEKYGLEKENPREYCIARHTDDKS
GKEIILDDTECPLQIFRDWPNDRGDLVFQLKKRPPDYVPKKGRKPEDKGPRGKGMDVPLH
GSLPPEKLPYLVELSPGRGNHYGYYTYRHHEDGSDSRDKPKLYRLQHSVTEVGSDTTDDG
SIQLFGPGILPHHCKLMHTEGLVTVTPHSLEAETYVDGQRVTETTVLRSGATLQFGASHV
FKFVDPSYDHSMGKGGPGPMMRGRHKSGSVPETTFDLQGDLHSGTALSTSKSSGKLEMER
SANGSERGMVKPMIRGEQQDSRSQDSLSPEVTLPASIEFRDNSEDTFLTAIINYTNSSTV
HFKLSPTYVLYMTCRYVMSSHYRPDIGPSERTHKVIAIVNKMVSMMEGVIQEIPEADQKQ
KNIAGALAFWMANASELLNFIKQDKDLSRITLDAQDVLAHLVQMAFKYLVQCLQSDLSNY
MPAFLDDPEEQNPQRPKIEDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNK
LVMEADSGLCSHYWGAILRQQLSHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSMQ
DVQNIHNTCFKLNSLQLNALMTNYHCAPDEPYIPPELIDHVVAVAENTADELARSDGREV
QLEEDPDLQLPFLLPEDGYSCDVVRNIPNGFQEFLDPLCQRGFCRLTPHPRSPGTWTIHF
EGVDCDSHFSADNSDLQMRKEPEVVTVTLKKHNGMGLSIVAAKGAGQDKLGIYIKSVVKG
GAADMDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATLL
NQPSPMMPRASQGGRDKNGKLRPKSEGFELYNNSVQNGSPESPQADWQAYPEPKKMSGEE
RLLKNRADHRSSPNVANQSQSPGGKAVYTRGPGTKITSVSTGNLCVDDEPSPPHPEAYPI
PTQTYPREYFTIPASKSTNRMDSAPGQIYADDRGPPGPLEDHHHNSIAMQRVDHSQEELC
DLPGGYPPTGLRPEDLVHLQQQREGDYQRGSGEHWVNHHQVSSSVESSTSSQEHLNYSSS
SSNKTQSNHKSGPGRWKTPGPIAPHPVPVAQSTRTDLPPSTAPSPVHYQDFELQPDLPLP
PPPSATQQQASAAAADRKKREEQQRWYEKEKARLEEERERKRREQERKLGQVRAPSLPPP
GPTAGPAAAAPRPEKLSTLPRAGTLPPQGNPMDTVIRELLPQQQPRTIERRDLQYITISK
EELSSSDSLSPDPWKRDAREKLEKQQQLHIVDLLDREIQDLQAKPERTAEESDRLRKLML
EWQFQKRLQESKQSDEEDEEDDDEDVDTMMIMQRLEAEKRARLQDEERRRKQQLEEIRKR
EAEDRAKQEEERRWREEERARREVDEKRRQEEEYYTRLEEGRRRQHEEAERKLLTPDEPG
LYRPPLPRDYQPQPSPPTASPATTATNAPPPPPQRNTSYLKTQVVSPDALYTAKFVSYND
EEDEDTTGLAGFNSYTGNTTGVVGSGEVYKDPREKWTKGGQEQENTLTEGAPESMTFKER
QRLFSQGKEVSNKVKASRKLMELENELNTKQ
NT seq
5496 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggagcagggaggaggagcggcggaaactagccgatatcattaaccactggaac
gccaaccggcttgacctgttcgagatcagccaacccaccgaggacttggagttccacggt
gtgatgcgtttctacttccaggaccgcgtagcagggaactttgccaccaagtgtatccgc
gtgtcctccacggccaccactcaggatgtcatcgagacgctggccgagaagttccggccc
gacatgaggatgctctcctcgcccaaatactccctctacgaggtccatgtcagcggggaa
cggaagctggacctggatgagaagccactggttgtgcagctcaactggaacaaagacgac
cgcgagggacgtttcgtcctcaagaatgagaacgacatcatccccaagaaggcgcagagc
aacgggccggagagggagaaggagggagtcatccagaacttcaaacggacactgtccaag
aaagagaagaagaaggagaagaagagagagaaggaggctcacatttctgacggagatgag
caagcactgagcagagaagatggtgagaactccagactggcggcggaggtgtacaaggac
atgccggagaacagcttcacccggaccatctccaaccctgaggtggtgatgaagaggagg
cggcagcagaaactggagaagaggatgcaggagttccgcagcagcgacggcaggccagac
tcgggggggacgttgaggatctatgcagacagtctgaaacccaatatcccctataagacc
atcttgctgtccacgacagacatggcagactttgctgtggtggaggccctggagaagtac
ggcctggagaaggagaacccccgggagtactgcatcgccaggcacacagatgacaagtct
gggaaggagatcatcctggatgatacagagtgtcctcttcagatcttcagagactggccc
aacgacagaggagacctagtattccagctgaagaagagacctccagactacgtgccaaag
aagggccgcaagccagaggacaagggccccagggggaagggcatggacgtgcccctgcat
gggtctctacccccagagaaactgccttacctggtggagctcagcccagggagggggaat
cactatggctactacacctatcggcaccacgaagacggctcagactccagggacaaaccg
aaactctaccgcctacagcacagtgttactgaggtgggctcagacactacagacgacggc
tccatccagctgtttggtccaggtatcctgccccaccactgtaaactgatgcatacggag
ggtttggtgacagtgacaccacacagtctggaggctgagacttacgtggacggccagcgt
gtcaccgagaccaccgtgctgcgaagcggagccacactgcagttcggcgcctcccacgtg
ttcaagtttgtggaccccagctacgaccacagcatgggcaagggagggcccggaccgatg
atgagaggcaggcacaagtcaggaagtgttcctgagacgacctttgacctgcaaggggac
ctccacagtgggacggccctctccaccagcaagagctcagggaagctggaaatggagcgt
tcagccaacggcagcgagagaggcatggtcaaacccatgatccgcggggagcagcaggac
agcaggtcccaggacagcctgagcccagaagtgacgctgccggccagcatcgagttcagg
gacaactccgaagataccttcctgacggccatcatcaactacaccaacagctccacggtg
cacttcaagctgtcccccacctacgtgttgtacatgacctgtcgctacgtcatgtccagc
cactaccggcccgacatcggcccctcggagcgcacccacaaagtcatagccatcgtcaac
aagatggtgagcatgatggaaggagtcatccaggagattcctgaagcggaccagaagcag
aagaacattgcgggggccctggctttctggatggccaatgcctcagagctgctcaacttc
atcaagcaggacaaggatctgtcgcgcatcacactggacgcccaggacgtgctggcacac
cttgtccagatggccttcaagtacctggtccagtgtctgcagtctgacctgagtaactac
atgcctgccttcctggacgacccagaggaacagaaccctcaaaggcccaaaatagaggat
gttttgcacaccctgacgggcgccatgtcgctgctgcgtcgttgccgtgtcaacgcggcg
ctgaccatccagctgttctcccagctcttccacttcatcaacatgtggctgttcaacaag
ctggtgatggaggctgactctggactgtgttcacactactggggcgccatcctccgccag
cagctcagccacatcgaggcctgggcagagaaacagggcctggagctggctgctgactgc
cacctcagtcgcatcgtacaggctacgactctcctcaccatggacaagtactccatgcaa
gatgtgcagaacatccacaacacctgcttcaagctgaactccctgcagctcaacgccctc
atgaccaactaccactgtgctcccgacgagccttacatccccccagagcttatagaccac
gtggttgccgtggcggagaacacagcagatgagctggctcgtagcgacggccgagaggtc
cagctagaggaggaccctgacctgcagctgcccttcctgctgcccgaggacggctactcc
tgcgacgttgtgaggaacattcccaacggattccaggagttcctggaccccctttgtcag
agaggattctgtcggctaacccctcacccgcgctcccctgggacctggaccatccacttt
gaaggagtcgactgcgacagccacttctctgcagacaactcagacctgcaaatgcggaag
gaaccggaagttgtgacggtcaccctgaagaagcacaatggcatgggcctcagcattgtg
gctgccaagggtgctgggcaggacaagctcgggatctacatcaagtctgttgtgaaggga
ggcgcggctgacatggacgggcgtctggctgcaggggaccagctgctgagtgtggacggc
cgcagcctggtgggcctctcccaggagagggctgcggagttgatgacgaggacaggctct
gtagtgacactggaggtggccaaacagggagccatctaccacggcctggccacgctcctc
aaccagccttctcctatgatgcccagagcgtcgcaaggagggcgtgacaagaatggtaaa
ctgagaccaaagagcgaaggctttgaactgtacaacaactcggtccagaacggctctcca
gagagcccccaggccgactggcaggcctacccagaaccaaagaagatgagcggggaggag
aggctactgaagaaccgggccgaccaccgctccagccccaacgtggccaaccagagccag
agtccgggagggaaggccgtctacacacgaggacctgggaccaagatcacctctgtctcc
acgggcaacctgtgtgttgacgacgagccctctcctccccatccggaggcctatcctatt
cccactcagacctaccccagggaatacttcaccatcccagcctccaagtctacgaaccgg
atggactcggccccaggacagatatacgctgacgacaggggtcctcccggccccttggaa
gaccaccaccacaacagcatagctatgcagcgggtggaccactctcaggaggagctgtgt
gacctcccagggggctaccctccaaccggcctgcgtcctgaggacttggtccacctgcag
cagcagagagagggtgactaccagcggggcagtggggaacactgggtcaaccaccaccag
gtctcctcctccgtggagtcctccacctccagccaggagcacctcaactactcctcatcc
tcctccaacaagacccagagcaaccacaagagtggcccgggacgctggaagacccccggc
cccatcgctccccacccagtccccgtggcccagtccacacgcacggacctccctccctcc
accgccccctcccccgtacactaccaggactttgagctccagcccgacctgcccctgccc
cctcctccctcggccacccagcagcaggcctcagccgccgccgccgaccgcaagaagcgc
gaggagcagcagcgctggtatgagaaggagaaggcccggttagaggaggagagggagagg
aagaggagggagcaggaaaggaagctgggacaggtccgtgccccatccctacctccccca
gggccaacagcaggcccagcagcagcagcccccaggccagagaaactgtccaccctgccc
agagcaggcaccctgccccctcagggtaacccaatggacacagtgatcagagagctgctc
ccccagcagcagccccgcaccatcgagcgccgggacctacagtacatcaccatcagcaag
gaggagctgtcttccagcgacagcctgtccccagacccctggaagagggacgcccgggag
aagctggagaagcagcagcagctgcacatcgtagacctgctggacagggagatccaggac
ctgcaggccaagccggagcgtacggccgaggagagcgaccggctcagaaagctgatgctg
gagtggcagttccagaagagactgcaggagtccaagcagagtgatgaggaagatgaggag
gatgacgacgaggacgtggacaccatgatgatcatgcagcggctggaggcagaaaagaga
gcaaggttgcaggacgaggagcggcgcaggaagcaacagctggaggagatccgtaagcgc
gaagcggaggaccgggccaaacaggaggaggagagacgctggagagaggaggagagggcc
agacgagaggtcgatgagaagaggaggcaggaggaggagtactacacacgtctggaggaa
gggcggcgccggcagcacgaggaggccgagcgcaagctgctgacgcctgacgagcctggt
ctgtacagacctcccctccccagggactaccagcctcagccctcccctcccactgcatcc
cccgcaaccactgccactaacgctccaccacccccgcctcagagaaacacttcctacctc
aaaacccaggtcgtctcccctgacgccttgtacactgccaagtttgtctcgtacaatgac
gaggaggatgaggacactacaggcctagcaggatttaattcatacactggaaacacaacc
ggggttgtaggatcaggagaagtttacaaggacccacgagagaagtggacgaaaggtggt
caagaacaggaaaacactttaactgaaggagccccggagagtatgacattcaaggagcgc
cagcggcttttttcccaagggaaggaagtatccaacaaagtcaaggcctcgcgaaaactc
atggagctggaaaatgaactcaatacaaagcagtag
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integrated database retrieval system
