Oncorhynchus tshawytscha (Chinook salmon): 112250168
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Entry
112250168 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM9 isoform X1
KO
K10649
tripartite motif-containing protein 9/67
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112250168
04121 Ubiquitin system [BR:
otw04121
]
112250168
Membrane trafficking [BR:
otw04131
]
Exocytosis
Calcium ion-dependent exocytosis
Others
112250168
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112250168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
fn3
zf-B_box
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
PRY
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
112250168
NCBI-ProteinID:
XP_024275842
LinkDB
All DBs
Position
LG05:22345788..22373062
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AA seq
708 aa
AA seq
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MDEELKCPVCGSLFKDPILLPCSHNVCLACARNIIVQTPEGETPPHNRASNSDYDYLDMD
KMSMYSETDSGYGSYTPCLKSPNGVRVFPPTLVHRHCSITCPLCHRSVSLDERGLRGFPR
NRLLEAIVSRYQQSRSANVKCQLCDRNPVDATVMCEQCDVFYCTPCQQRCHPSRGPLAKH
RLVPPTQSPVAGGQQMPTATLRKQGTCADHDTVNFSMYCINCKTPVCMKCLEGGKHGSHD
VKPLAAMWKQHKCQLSQALNGVSDKAKDAKEFLVQLKNMLQQIQENGVEFEACLVAQCDA
LIEALTRQKAKLLTKVTKEREYKLKVVRDQITHCTMKLRQTTGMMEYCLEVIKENDPSGF
LQISDALIKRVTSSQDQWVKGALEPKVGPEFDLTLNTDPLLQTIIQLDFVQSKDIQETPL
LKQMHAGGLKDTESSGVESANVPPAPLLQLEKCCTRNNSATLAWRVSVSPSNPIEGYVLE
LDDGNGGQYREVYVGKETVCTVDGLHFNSSYNARVKAYNSTGVGPYSKTVVLKTSDVAWF
TFDPASAHRDIVLTNENQTVSCNSYDDRVVLGTAAFSKGVHYWELMVDRYDNHPDPAFGV
ARINTMKDMMLGKDDKAWAMYVDNNRSWFMHNNSHTNRAEGGISKGATVGILLDLNKHTV
TFFINKQQHGPVAFENLEGVFMPAVSINRNVQVTLLTGMEVPKNFKQQ
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaattaaaatgccccgtttgcggttctcttttcaaggatcctattctttta
ccttgctcgcacaatgtgtgtttggcgtgcgcccgaaatatcattgtacagaccccagaa
ggcgaaacaccaccgcataaccgtgcctccaactcggactacgattatttggatatggac
aaaatgagcatgtatagtgaaacggacagcggttatggatcatacacgccgtgcctcaag
tctccaaatggggtgagggtgtttcctccgactctggtgcaccgccactgctccataacg
tgtcctctctgtcaccgtagtgtctctctggatgagcgggggctgaggggctttccacgt
aaccggctactggaggcgatcgtgtctcggtatcaacagagccgctctgccaacgtgaaa
tgtcagctatgtgaccgcaaccctgtcgatgccactgtgatgtgcgagcagtgtgacgtg
ttttactgcacaccttgccagcagcgatgccacccttcccgtggaccgctggccaaacat
cgattagtgccaccgacccaatcgccagttgcaggaggacagcagatgcccaccgccacc
ttgcgcaaacagggaacatgtgcagaccatgacacggtgaactttagcatgtactgcatc
aactgcaagactccagtgtgcatgaagtgtctggagggtggcaagcatgggagtcacgat
gtaaaacctttagcggccatgtggaaacagcacaagtgtcaactgtcccaagctttgaat
ggtgtgtcggataaagccaaggatgcgaaggaatttctggtgcagttgaagaacatgctt
cagcagatacaggagaatggggtggagttcgaggcctgcctggtggctcagtgtgacgcc
cttattgaggctctgacgcggcagaaagccaagctcctcaccaaggttaccaaagagagg
gagtacaagctcaaggtggtgcgtgaccagatcactcactgcactatgaagctacgtcag
actacaggcatgatggagtactgtctggaggtgatcaaagagaacgaccccagcggcttc
ctgcagatctccgatgcgctgatcaaacgtgtgacatcgtctcaggaccagtgggtcaaa
ggggctctggagcccaaggtgggccctgagtttgacctgaccctgaataccgaccccctg
cttcagaccataatacagctggactttgtccagagcaaagatattcaggagactccatta
ttgaaacaaatgcatgcaggtggactgaaagacacggagagctcaggagtggagtctgcc
aacgtgcccccggcccccctgctgcagctggagaagtgctgcacccgcaacaacagtgcc
accctggcctggagggtcagtgtgtcccctagcaaccccattgaaggctacgtcctggag
ctggacgacggcaacgggggtcaatacagggaggtgtatgtagggaaggagaccgtgtgc
accgtggacggcctccacttcaacagttcctacaacgccagagtcaaggcctacaactcc
accggggtggggccctatagcaaaactgtggtgctgaagacatctgacgtggcctggttc
accttcgaccccgcctcggctcacagggacattgtgttgaccaatgagaaccagacggtg
agctgcaacagctatgatgaccgtgtggtgctggggactgccgccttctccaagggggta
cattactgggagctcatggtggatcgctatgacaaccacccggacccagcgttcggggtg
gcgaggatcaacacgatgaaggacatgatgctggggaaggatgataaggcctgggccatg
tacgtggacaacaaccgcagctggttcatgcacaacaactcccacaccaacagggccgag
gggggcatcagcaagggtgccactgtgggcatcctgctggacctgaacaagcacactgta
acgttctttatcaacaaacagcagcatggccccgtggccttcgagaacctggagggagtc
ttcatgcctgctgtcagcatcaacaggaatgtccaggttaccctactaacaggaatggag
gtgccaaagaattttaagcagcagtag
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