Oncorhynchus tshawytscha (Chinook salmon): 112250222
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Entry
112250222 CDS
T05605
Name
(RefSeq) transcriptional regulator ATRX-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112250222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112250222
03036 Chromosome and associated proteins [BR:
otw03036
]
112250222
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
112250222
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
112250222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
C5HCH
Motif
Other DBs
NCBI-GeneID:
112250222
NCBI-ProteinID:
XP_024275946
LinkDB
All DBs
Position
LG30:15804321..15849230
Genome browser
AA seq
1967 aa
AA seq
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MSAEMLSIPLGTSKLNVLVTKLHGFLAHAPEEDDNTLVTESPEGIMTKDCVEPHSTDRTS
LETSTDALKQSRCGSRRKPSVVIKHSGLDESGASNESDDDCLIVNSNGYPDVTRLAKGTA
LVRPEPVEKVRDDFRGTEFHCGKSGHLRRVFPRRRGGGEHLEIVSCTACGQQVNHFQRDS
FNQHPVLKVLICKSCFKYYSSDDISKDCDGMDEQCRWCAEGGNLICCDFCPNAFCKKCIL
RNLGRKELSGILDEESKWYCYVCSPAPLLDLVVACDNVLDNLGSLWQDHRKRGRGDGKSG
HCDSHPRHSQNIPTGHWNHSGMDGHVVFNYNTLQIPDEMAKKAKNLVDSTNTVNTTFVKF
IQGGMDFKRQYLKTFQSVLKGLRKSHTALEEALWEEFKELGLPKDGGNPTFGTDAPQQAQ
EGCVEMDIVDKNCLHYLKKIASEHLEENDSDSKGFTDDERPSSSSEMKGVLGTEIIPRRG
RGRPRKNSKPGEDPSNMTKQLVVQLTPVPVEKQPPSGPPELEAEGKKEFEEEIKEKVDER
KGDCESIELATEGEYESAEEGNESLVLELEDEPENRRSPRVKTTPLRRPGEGKTKSTPSG
ADSEGDSDPDTSPNVEVPQGADEGGLGRGIEDSDSDEVPAVLQRAAMARSSDEAGSDDGD
HRSVTKKCLFGLKKNTALSPERVVRKRKVQDRSSDSDSSSDNPDLQKEIKTMSRPRGRPR
KVKREDEPTPSKNSPQHRPPGRPRKVKKENESAFSKEGNTQVTKPKSTPRSQQKTKQSPS
SSSQEEGDQDSESSDDSGDQKIKPITEEVALLGSAAFHQSSGDEEQTRSGPSWEAEDDDD
PENRIAKKMLLAQIKANYSSGEDFSSDEESSQDDESDREEKAQEEGKDQSSDENGETSSL
TSDSESSKTRHRHCLLRHKLSLDDGNPSDQKTAEENGNEQKVKKSRRTEGETLESQSSDD
SQSEQEESGMSEELSQSENEGNEQKPKSSSTSRVERESVRSYLQKKQQPSYIVLSDSSVD
KSEDDEKDGDNKGTPKGRKKIRRIIIDEHLRSETQRALKEEEDRCRRLAGREQREDFREV
IVIDDEVSQVACPITTKLVLDQDEGTREPLIQVHRNLVTRLKPHQVDGVQFIWDCCCESV
KKANSTPGSGCLLAHCMGLGKTLQVVTFLHTMLQSRCLNFRTALVVCPLNTILNWVNEFD
KWQVNMGADKVKVTELATLKRPQERYIALQKWQKDGGVMIMGYEMYRNLTLGLKVTHRQF
KKTFNSTLVDPGPDFVICDEGHILKNEASNISKAMSAIKTKRRVVLTGTPLQNNLNEYHC
MVNFIKENLLGSIKEFRNRFINPIQNGQCADSTPRDVRIMKNRAHVLHAMLAGCVQRRDY
SALTKFLPPKHEYVMAVRVTPLQYRLYRYYLDNFTGAGSVVEGARGKTGTSLFKDFQILS
RIWTHPWCLQLNFISKENKGHFDGKHQGKAESKEKENKGKLRNADEKSNDVEVIMVWNSS
SKGVNVEGDQRAGPLVPVVDAVRASTSFRPDSPAADWYKSMLSDSDATILGHSGKMVLLF
EILRMAEELDDKLLVFSQSLISLDMIEDFLDLANKAKDNGQSSLYKGDGSWIRNIDYYRI
DGSTSATSRKKWAEEFNNATNERGRLFLISTRAGSLGINLVAANRVIIFDASWNPSYDIQ
SIFRVYRFGQLKAVFVYRFLAQGTMEEKIYDRQVAKQSLSFRVVDQQQIQRHFTLFELTE
LYMFEPDLLDDPNSEKKSKRITPLLPKDIVLAELLQICKEQIVRYHEHESLLDHKEEEEL
SEADRKAAWAEYEAEGAFFLNKAALSSTNVPSPSTSRMANSLSSLYKKTNEQLKNMINAS
RDKVSEAIKSLHSLKNLSMDDYVLRLWHDNPSLDEKQVKVLAQTWKTSNDKERERRQALY
HDLLSKQQSLTMCIQTILTSRKTEVTQTATVTNQTPALTDSVKKPML
NT seq
5904 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagagatgctcagcattcctcttggcacgagcaagctcaatgtgttggtgacc
aaactgcatgggttcttggctcatgctcccgaggaagatgacaacacactggtgactgaa
agtcctgagggtataatgaccaaggactgtgtggagccgcactcaacagaccgaacctcc
cttgagacctcaacagacgccttgaagcagtccagatgtggttccaggagaaaaccttcc
gttgtgattaaacacagtggactggatgaatctggtgcttcaaatgaaagtgatgatgac
tgcttgatcgtcaattcaaacggttatcctgatgtaacaagattggctaaaggtactgca
ctggtgaggcctgagccagtggaaaaagtcagagatgacttccgaggtacagaattccat
tgtggaaaatctggtcatctgaggagagtttttcccaggagacgtggaggaggtgaacac
ttggagattgttagctgtacagcctgtggccagcaagttaaccacttccagagggactcc
ttcaatcagcatccggtactcaaagtacttatttgcaagtcttgtttcaagtattactca
agtgatgacatcagcaaggattgtgatggcatggatgaacagtgcagatggtgtgcagag
gggggaaacctgatctgctgcgacttttgccccaacgccttctgtaagaaatgcattttg
cgtaatctggggcgaaaggagctgtctggcatcctagatgaggagagtaagtggtactgc
tacgtatgcagcccagcgcctcttctagacctggtcgtcgcctgtgacaacgttcttgac
aacctggggagtttgtggcaagaccaccgcaagaggggcagaggtgatggcaaatctgga
cattgtgactcccatcccaggcattctcaaaacattcccacgggtcattggaaccatagt
ggcatggatggtcatgtggtgttcaactacaacacccttcaaattccagatgagatggcc
aaaaaggcaaaaaaccttgtggactctacaaacactgtaaacacaactttcgtgaaattc
attcaaggtggaatggattttaagcgacaatacttgaagactttccagtcagtactaaag
ggtctaaggaagtcccacacagctctggaggaagccctttgggaggagttcaaagagctt
ggtctgccaaaagatgggggaaaccccacttttggtactgatgcacctcaacaagcacaa
gagggttgtgtggaaatggacattgttgataaaaattgcctgcattacttaaagaaaatt
gcatctgaacatttggaagagaatgattcagactcgaagggctttacggatgatgaaagg
ccttcgtcctcaagtgaaatgaaaggtgtccttggcacagagataataccccgtcgaggt
agaggcaggccacggaaaaactccaaacccggagaagatccttccaacatgacaaaacaa
ctggtggtgcaacttacacctgtccctgttgaaaaacagccaccctctggccccccggag
ttggaggcggagggaaaaaaggagtttgaggaagaaataaaagaaaaagtggatgaacgt
aagggggactgtgaatctattgaacttgcaacagaaggggagtatgaatctgctgaggag
ggaaacgaatctctggtgctggaactggaagatgaaccagagaatagacgctcacctcgg
gtaaagaccacacccttacgcaggccaggtgagggcaagaccaagtctaccccctcaggc
gctgacagtgagggtgactctgaccctgataccagccccaatgttgaagtgcctcaagga
gctgatgagggagggcttgggagaggaattgaagactcagactccgatgaggtccctgct
gtccttcagcgggcagccatggctcgcagttcagacgaagccgggagtgacgatggagac
catcggagcgtgaccaagaaatgcctcttcggcctgaagaagaacactgccctctctcca
gaaagagtggtccgtaaacgcaaggtgcaagaccgctcctctgactccgactcctccagt
gacaatccagacctgcagaaggagatcaagactatgagcaggcccagggggaggcctcgg
aaggttaagagagaggatgaacctacccccagcaagaatagtccacaacataggcccccg
ggcagacctcggaaggtcaagaaagagaatgaatctgcattcagcaaggagggtaatacc
caggtaaccaagcctaaaagcacacctcggtcccagcagaaaacaaagcagtcgccatcc
tcttccagtcaagaagagggagaccaggattctgagtctagcgacgacagtggtgaccag
aagattaagcctatcactgaggaggtggcattactggggtcagcagctttccaccagtca
tctggcgatgaagagcagacccggtctgggccttcttgggaagcagaagatgatgacgat
ccagaaaatagaatcgctaagaaaatgctcttggcccaaatcaaagccaactactcatcg
ggggaggatttctcttcagacgaggagtcatcacaggatgatgaatctgacagggaagag
aaggcgcaggaagaggggaaagatcaaagctcagatgagaatggggagacctccagtttg
acctctgactctgagtccagtaaaactcgtcacagacactgtctgctacgccacaagctc
agccttgacgatggaaatccaagtgatcagaaaacggctgaagaaaatgggaacgagcag
aaagtcaagaagtctagaagaaccgaaggtgagacattggagagccagagtagtgatgat
agccaatcagagcaggaagagtctggtatgagtgaagagctgagccaatctgagaacgag
ggcaatgaacagaagcccaaaagctcatctacctctagagtcgagagggaatcagtccgt
agttatctacagaagaagcagcaaccctcatatattgtgctgtctgactccagcgtcgat
aagagtgaagatgacgagaaggacggagacaacaaaggtacacctaagggccgcaagaag
atccgcagaatcatcatagatgagcacctccgctcagagacccagagagccctgaaggag
gaggaggatagatgcagacgcctggcaggcagagagcagagggaggacttcagagaggtg
attgttattgacgatgaggtgtctcaagtggcctgtccaatcaccactaagctggtcttg
gatcaggatgaggggaccagggagccactcattcaggtgcacaggaacttggtgaccagg
ctcaagcctcaccaggtggatggtgtgcagtttatctgggactgttgttgtgagtcagtg
aagaaggccaattcaacccctggatcaggttgcttactggcccactgcatgggcctaggg
aagacactgcaggtggtgacattcctccacacaatgctgcagtcaaggtgcctgaacttc
aggactgccttggtggtgtgtccactcaacactatccttaactgggtcaacgagtttgac
aagtggcaagttaacatgggagctgacaaagtcaaggtgacagagttggcaacactgaag
cgacctcaggagcgttatattgccctgcagaaatggcagaaggatggtggtgttatgatc
atgggctatgagatgtaccgcaacctcacactaggcctcaaagtcacccacagacaattc
aaaaagacctttaacagcacactggtcgatccaggtccagactttgtgatctgcgatgag
gggcacatccttaagaacgaggcgtccaacatctccaaagctatgagtgccattaagacc
aaacggagagtggtgctgacaggcacccctctgcagaacaacctcaatgagtaccactgc
atggtgaacttcatcaaggagaaccttctaggctcaatcaaggagttccggaatcggttt
atcaaccccattcagaatggccagtgtgcagactccacccccagagatgtccgcatcatg
aagaatcgcgcccatgtccttcatgcaatgttggcaggatgtgtacagaggagagactac
tcagccttgaccaagttcctgccccctaaacatgagtatgttatggcagtgagggtgacc
cccctccagtacagactgtatcgctactacctggacaacttcactggagcaggatctgta
gttgagggagccaggggcaagactggaaccagcctctttaaggacttccagatactcagc
cgaatctggacgcatccctggtgtctgcagctcaactttatcagtaaagaaaataagggc
cattttgatggaaagcaccaggggaaagctgagagtaaagagaaggagaacaaggggaaa
ttgcgtaatgctgatgaaaaaagcaatgatgtggaagtgatcatggtgtggaacagttca
tcaaagggtgtcaatgtggaaggagaccagcgtgcagggccactggttccagtggtagat
gcggtcagagcatccaccagtttcaggcctgacagtccggctgcagactggtacaagtca
atgctgagtgattctgacgccaccatcctgggacactcagggaagatggtgctgctgttt
gagattctccgaatggcagaggaactggacgacaaactgttggtgtttagtcaatccttg
atctcattagacatgattgaagatttcttggacctcgctaacaaagccaaagacaacgga
caatcatccctatacaaaggtgatggcagctggatcagaaacattgactattaccgtatt
gatgggtccactagtgccacatccaggaagaaatgggctgaagagttcaataatgccacc
aatgagcgaggtcgtctgtttctcatctcaacaagagctgggtcccttgggatcaacctg
gtagcagctaacagggtcataatttttgacgcttcgtggaacccctcctacgacatccag
agcatcttcagggtgtaccgttttggccagctgaaggctgtgtttgtctaccgcttcttg
gcacagggcaccatggaggagaagatctatgaccggcaggtggccaagcaatctctatcg
ttccgggtggtggaccagcagcagatacagagacacttcactctgtttgaactgacagag
ctttacatgtttgagccagacctgctggatgaccccaactctgagaagaagagcaagcgg
atcacacccctgctgcccaaggacatcgtcctggcagagctgctgcagatctgtaaggag
cagattgtccggtaccatgaacacgagtccctgctggaccacaaagaggaggaggagctc
agtgaggccgaccgcaaagctgcctgggctgagtacgaggcagagggtgcattcttcttg
aataaggcagcactcagcagcaccaacgttcccagcccttccacctctcgtatggccaac
agtctgtcatccctgtacaagaagactaatgagcagctgaagaacatgattaacgccagc
cgtgacaaggtcagcgaggccatcaagtccctgcattccttaaaaaacctctccatggat
gactatgtgttgcgcttgtggcacgataacccaagtctagatgagaagcaggtgaaagtc
ctggcccagacctggaaaaccagcaatgacaaggagcgggagcgaagacaagccttatat
catgaccttctctcaaaacaacaatcacttacaatgtgcatccagaccattttgaccagt
agaaaaactgaagtgacacagactgccactgtcaccaatcagacaccagccttgacagac
tccgttaagaaacccatgctgtga
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