Oncorhynchus tshawytscha (Chinook salmon): 112250225
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Entry
112250225 CDS
T05605
Name
(RefSeq) nuclear pore glycoprotein p62-like isoform X1
KO
K14306
nuclear pore complex protein Nup62
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112250225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112250225
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112250225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Exonuc_VII_L
Nucleoporin_FG2
DUF4164
Motif
Other DBs
NCBI-GeneID:
112250225
NCBI-ProteinID:
XP_024275951
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Position
LG30:complement(15736248..15741639)
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AA seq
547 aa
AA seq
DB search
MSGGFNFGQASNTGFSLGAPKTTAAPATGFGIASAAPTTSGGGFSFGPPNPAQPPNSTNS
TGGFSFGNPTQNSTPAVGGFSIGTPTAKLNLGTPAASQPALTGITMGMATPTSGAGFGLG
GGFATQTTAVPTGGGFSFGTAGGLGAPVAQTPAQPAAAGGLSLGTPAPTTQMMGGGFSFG
AAKVQAAPTVTAGRGFSFGNSAPATLSLGNQSTGLNSVAPASTAAPTTTQGGGFAFGVKP
LATPAPAVIASATQASLGSSLFAVPASTAAVTGFLGAAPTSAAPAATSAAGNTLGFMLKP
LGAVTATTTASAGTGFSLGMKPAGATGIGSTVPITGIATTITTVTASAPPTVMSYTQLEG
LINKWSLELEDQERHFLQQATQVNAWDRTLVENGEKITSLHREMEKVKLDQRRLDQELDF
ILSQQKELEDLLSPLEESVKEQSGTIYMQNADEERERTYKLAENVDAQLKRMSQDLKEII
EHLNTSCGPADTSDPLQQICKILNAHMDSLQWIDQNSVLLQRRVEDVSKLCDNRRKEQEK
TLRITFG
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaggattcaactttggacaagcgtccaatactggattcagcttaggagctccc
aaaaccacagctgcgccagccacaggctttgggattgcaagtgctgcacctacaacttca
ggtggtggcttctcttttggaccccccaatcctgcccagcccccaaacagtacaaactca
actggaggattcagctttgggaaccctacacagaacagtactccagcagttggaggcttc
tctattgggactcccactgctaaactcaatctgggcacacctgctgcctctcaaccagca
ctgacagggataactatggggatggcaacccccacctctggggcaggctttggacttggt
gggggtttcgccacacaaaccactgctgttcccacaggaggggggttcagctttgggacc
gcaggtgggcttggagcccctgttgcccaaaccccggctcaaccagcagcagctggtggg
ctctctttaggaactcctgctccaacaactcaaatgatgggaggtgggtttagttttggt
gcagccaaggtccaggcagcccctaccgtgaccgcaggaaggggcttctcatttgggaac
agcgcccctgccaccctctccctggggaaccagtccacaggtctgaactctgtggccccg
gcctcaacagctgcaccaaccacaacccagggtggaggatttgcttttggtgtcaaacct
ttagctactccagcccctgctgtaattgcctcggctacccaggcctcattaggttcttct
ctctttgcagtaccagcatcaacggcagcagtcacaggttttctgggtgctgcccccacc
tcagctgccccggctgccacatcggcagcaggaaataccctgggcttcatgctcaaaccc
ctgggagcagtcactgccaccaccacagcatcagctggcacaggtttttcactgggtatg
aaacctgcaggtgccactggcatcggctcaacggtcccaatcactggaatagccacaacc
atcactactgttacagcaagtgctcctcctacagtgatgtcctacacccaactagagggt
ctcatcaacaagtggagtcttgagctggaggaccaggagaggcacttcttgcagcaggct
acccaggtcaacgcctgggaccgcacactggtggagaatggagagaagatcacatcactg
cacagggagatggagaaggtgaaactggaccaaagaaggctggaccaggagctggacttc
atcctgtcacaacagaaggaactggaggacctgctgtccccactggaggagtctgtcaaa
gaacagagtggaaccatctacatgcagaatgccgatgaggaacgcgagagaacgtacaag
cttgcagagaacgtggacgcccagctgaagagaatgtcccaagatctaaaggaaataatt
gaacacctgaacacatcctgtgggccagctgataccagtgacccgcttcagcagatctgt
aaaattctcaatgcccacatggactctcttcaatggattgaccagaactcggtgcttcta
cagagaagggtggaggatgtgtccaaactctgcgacaaccgacgcaaagagcaggagaag
actcttcgcataacatttggttaa
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