Oncorhynchus tshawytscha (Chinook salmon): 112250242
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Entry
112250242 CDS
T05605
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112250242
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
112250242
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
KH_N4BP1_1st
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
112250242
NCBI-ProteinID:
XP_024275986
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All DBs
Position
LG30:complement(15088059..15104993)
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AA seq
971 aa
AA seq
DB search
MVLELAVPANAGPLLHRSIPHIERIFRVRVSYGSAESSCDSANVSTSNIIIVRVAEGKED
DCTKAKDYIVSLTSPAHRKREHLTLAQHKQLVVLKPVIEYDSQAVVEVREHVVDISGGER
NVMTAWSMVEKIKMEKHPCREEASELTEAQQPSGESEEGNSSESESEHQLQVNSGSCKRT
ELFSATKPHRQLCRSPCLDRPSFSQSSTLPELRPDDTKAAAVLKQASDKVYQTKMEFALK
LGYSGEQVETVLNKLGAAALINDILAELVRLGNKGELEVQASSNTGTLVSRGGPCVKEAV
SPEVSLEDDSVDPYDNLRPIVIDGSNVAMSHGNKEVFSCLGIQLAVDWFVEKGHKDITVF
VPAWRKEQSRPDAPITDQDILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLACDSDG
IIVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVV
PEHKKQPCPYGKKCTYGHKCKYYHPERANQPQRSVADELRAFAKLSAVKTMSEGALAKCG
TGLATAKGESGSEAKRVTPKRQSDPSIRSVACEPEERLSAVRKPEANSVPSLVSALSVPT
MQPAKSHAAGALNTRSASSPVPGSLQFTHSSLEHMSSVQYPHPPILVTNSHGASVTYSEQ
FPKYDSVSTDHGYYSMLSDFSNMSMSSMHNVDSFCSMEHEHGVYLRNPSQHCPDPCLSHS
NSDSFSSYGELYMSSVDSSVDESMKGQQSPAQSRLQASSHGGFHHEALTRVQSYGHEEPK
QGPCRKQSISHLAPHVQHPVVGARSSCPGDYPLPQNVLPSQSSQPGRSLGMTRMDSISDS
RLYESNPMRQRRPPLCREQHASWDPLPCGSESYGYHSYPLSNSLMQPCCERVMVRSMPDK
MEQIWRSPWENPPQVEHQERHVIPEHLYQTYRNLCNIFPSFVVHSVMEKNPHLTDPQQLA
AVIVTKLRSCH
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctggcagtgcccgcaaatgcaggccctttgcttcaccgctccatcccg
cacattgagcgtattttccgggtgagggtcagctacggatccgcggagtcaagctgcgac
agcgcaaatgtcagcaccagcaatatcataatagtacgtgtcgcggagggcaaggaagat
gactgcaccaaggcaaaagattacatcgtttccttaacttcaccagctcaccgaaagaga
gagcatctaacgttggctcaacacaaacagctggttgtgctgaagccagtcatcgagtat
gactctcaggctgtggtggaggtgagggagcatgtggtggacatctccggtggcgagagg
aacgtgatgacggcatggtcaatggtggagaagatcaaaatggagaaacacccttgcagg
gaagaggcctctgagctgactgaggcccagcagcccagtggggagtcggaggaggggaac
agctcagagagtgagtcagagcatcagctgcaagtgaacagcggcagctgtaagaggacg
gagctcttcagtgccaccaagcctcaccgtcagctctgtcgctctccatgcctggaccgg
cctagcttctcccagagcagtactctaccagagctccgccctgacgacaccaaggccgcc
gcagtcctcaaacaggccagtgacaaggtgtaccaaaccaagatggagtttgccttgaag
ctgggatactcaggtgaacaggtggagacagtgctgaacaagttaggggctgctgccctc
atcaatgatattctggctgagcttgtgaggcttggtaataaaggtgaactggaagttcaa
gccagcagtaacacaggcacgttggtctcccgtggaggcccctgtgtaaaagaggctgtc
agtccggaggtgtcacttgaagatgattccgtggatccttatgataatctcaggcctatt
gtcattgatggatcgaatgtggcaatgagccatggaaacaaagaggttttctcttgcctt
ggtatccaattggctgttgattggtttgtggagaaagggcacaaagacatcacagtgttt
gttcctgcctggaggaaagagcagtcgagacctgacgcccccattacagaccaagacatt
ttgcggaagctggagaaagaaaagatcctagtgttcaccccatctagaagagtccaaggg
aggagagtggtgtgctatgatgatcgctttatagtgaaactggcctgtgactctgatggc
ataattgtgtcaaatgacaactacagggacttacagaatgagaagccggagtggaagaag
ttcatagaggagcggctgctgatgtactcgtttgtcaatgataaattcatgccacctgat
gaccctttgggaagacacggtccaagtttagagaattttctccgcaagcgtcctgttgtt
ccagagcacaaaaagcaaccctgtccatatgggaaaaaatgcacttatggacataagtgc
aagtactaccatccagagcgtgcaaaccagccccaacggtcagtggctgatgaactgagg
gcatttgccaagttgtctgctgtgaagacaatgagcgagggggccctggccaagtgtggc
actggactcgccacagctaagggggagagtggctctgaggctaaacgagtgaccccgaag
cgccagtctgaccccagcatccgctcagtcgcctgcgagccagaggagagactgtccgct
gtccgtaagcctgaggcaaattctgtgccttcccttgtgtctgccctcagcgtgcccacc
atgcagcctgcaaagagccatgcggctggtgccttgaacacacgatcagccagcagccca
gtacccggctccctccagttcacccacagctccctggagcacatgtctagtgtacagtac
ccacatccacccatcctagtcaccaacagccatggtgcttctgtcacttacagtgaacag
tttcctaagtacgattctgtgagcacggaccacggatactactctatgcttagtgatttt
tctaacatgagcatgagcagcatgcacaacgtggacagcttctgtagcatggagcatgag
catggggtttatctgagaaatcccagccagcattgccctgatccctgcctcagccactcg
aacagtgactccttttcctcttatggggaattatacatgagctcagtggacagtagcgtg
gatgagagcatgaagggacagcagtctccagcacagagcagactccaggcctcctcccat
ggggggttccaccacgaggccctgacccgggtgcagagctatggccatgaggagcccaag
caaggtccatgcaggaagcagtccatatcccacctggcaccgcatgtccagcaccctgtt
gttggggcccggtccagctgcccaggggactaccccttacctcagaatgtcctcccgtca
cagtcctcgcagccgggacgctccctgggcatgacacgtatggacagcatctcagactcc
aggctgtacgagagtaaccccatgaggcagcgcagacccccactgtgccgcgagcagcat
gccagctgggacccgctgccctgcggcagtgagtcctatggctaccattcctaccccctg
agtaacagcctgatgcagccgtgttgtgagcgggtgatggtccgcagcatgcctgacaag
atggagcagatttggaggtctccatgggagaacccgcctcaagtcgagcaccaggagcgc
catgtcatcccagagcacctgtaccaaacataccgcaacctctgcaacatcttcccatct
ttcgtggtgcactctgtcatggagaaaaaccctcatctgacggacccacaacaactcgct
gccgtcattgtcacgaagctgaggtcttgccattga
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