Oncorhynchus tshawytscha (Chinook salmon): 112250260
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Entry
112250260 CDS
T05605
Name
(RefSeq) TBC1 domain family member 8B-like isoform X1
KO
K19951
TBC1 domain family member 8/9
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112250260
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112250260
Endosome - Golgi transport
Rab GTPases and associated proteins
112250260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
GRAM
EF-hand_1
EF-hand_6
EF-hand_8
EF-hand_7
AF0941-like
Motif
Other DBs
NCBI-GeneID:
112250260
NCBI-ProteinID:
XP_024276015
LinkDB
All DBs
Position
LG30:14104463..14125049
Genome browser
AA seq
1137 aa
AA seq
DB search
MWLKPEEILLKNAFKLWVTEKGNDYFVLQRRRGYGEGGGGLTGLLVGTLDTMLDSTSKVA
PFRILHQTPDSQVYWSIACGGTKEEISQHWEWLEKNIMRTLSVFDSSDDITSFVQGKIRG
LIAEEGKVSCVQEDDPEKFREALLRFEKWFDLPQKEKLVTYYSCSYWRGRVPCQGWLYLS
TNFLSFYSYLLGSEVKLVISWNEIWRLEKTSNVILTESIHVLANGEDHFFSMFLHLNETF
LIMEQLADYSIKRLFDKETFQEEPSLSDPLQITKRGLETHARNEQFRAFFRLPKEENLLE
VYESFLWVPFSHFNTLGKICLSESYLCFASQDGSQCHVIIPMREVIGVEKPDRSSRALIV
CVRGKRALRFSEVRDFERLANAIRRRCGMTASPQHSASTEVIRGECQNLINHFEDNPEEV
ALMVGQKDSSKAVSTEALMTVFHPQDTENLDPKMLKEKMKEQSWNIHFSEYGRGTSMFCT
KKTRDLIVRGIPEALRGELWMLFSGAVNDMATNPGYYSELVDQSLGTSTLATDEIERDLH
RSLPEHPAFQSDTGISALRRVLTAYAYRNPKIGYCQAMNILTSVLLLYAKEEEAFWLLVA
VCERMLPDYFNRRIIGALVDQAVFEELIRMHLTQLTEHMTDLTFFSSVSLSWFLTLFISV
LPIESAVNVVDCFFYDGIKAILQLGLAVLDYNMEGLISSHDDAEAVTILNKFFDNVTNKD
SPLPQTVQQNSVGNNDKASSISKVDVSDLIKEAYEKYGDMKSEEVESMRKRNKLYVIQTL
EDTTKQNVLRVVSQEVKFSASQLDELYVLFKRQHFLSCYWTMNSPVLLHHDPSLAYLEQY
QLGFHQFSLLFSLLEPWSLCSGKDTLFLWAFRLLDENQDGLVNFKEFCCALDILYSGTFT
NKLTFLFKLHQPPAFTGSPFQSKAQRLPHFIPMTDDISHLSRLTVSDLPEDGVIRKSPER
GRGKVDLQAYLKQWQDEILKKEESIKDLPRINQAQFIQFSKTLYNLFHSDPEEESLYRAV
ARVTSLLLRMEEVGRRLQEPTSPQKSSTSPIQAALEGALPDGEASSTPESSSDTPSTPIT
QEAGSIPQEVEWSFAFEQILASLLNEPVLVRFFERPVDIQARLDHAKCAQLKAKTNK
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgtggcttaaacctgaagagatattgctgaaaaatgcattcaagttatgggtgacggaa
aaaggcaacgattatttcgtattacaaaggaggcgaggatatggagaaggaggaggcggt
ttgacaggtctcctggttggaactctggatacgatgctggactctacgtctaaagttgca
ccgtttcgcattctacaccagacaccggactcccaggtctactggtcaatagcgtgtggt
ggcaccaaggaggagatcagccaacactgggagtggctggagaagaacatcatgagaacc
ctgtctgtgtttgactccagcgatgacatcaccagctttgtgcagggcaagatcagaggt
ctgattgctgaggaaggaaaggtgtcatgcgtgcaggaggatgaccctgagaagttccgt
gaggctctgctaaggtttgagaaatggtttgacctccctcagaaggagaagctggtcacc
tactactcctgcagctactggaggggtcgcgtgccctgccagggttggctctacctcagc
accaacttcctgtccttctactcctacctgctgggctccgaggtgaagctggttatctcc
tggaatgagatctggaggctggagaaaacgtccaatgtcatcctgacggagagcatccat
gtgttggccaatggggaggaccacttcttctccatgttccttcatctcaatgagacattt
ctgatcatggagcagttggctgactactccatcaaacgcctgtttgataaggagactttc
caggaagagccctccctctcagaccctctgcagatcaccaagagaggcttagaaacgcat
gctaggaacgagcagttccgggccttcttcaggctgcctaaagaggagaacctgctggag
gtatatgagagcttcctgtgggtgcccttcagccacttcaacacgctggggaagatctgt
ctttccgagagctacctgtgtttcgccagccaggatggcagccagtgccacgtcatcatc
cccatgagagaggtgattggtgtggagaagccggaccgtagcagcagggctttgattgtg
tgtgtgcggggtaagagggctctacggttctctgaagtccgagactttgagcgcctcgcc
aatgcaatccgcaggaggtgtgggatgacggccagtcctcagcactctgcatcgactgag
gtcatcagaggggagtgccaaaacctcatcaatcactttgaggacaacccagaggaggtg
gctttgatggtgggacagaaggacagcagcaaggctgtcagcactgaggccctcatgacc
gtgttccatccccaggacaccgaaaatctggaccccaaaatgctgaaggagaagatgaag
gagcagtcatggaacatccacttctcagaatatggccgtggcaccagtatgttctgtacc
aagaagacacgagacctgattgtgcgtggcatccctgaggccttaaggggagagctctgg
atgcttttctcaggtgcagtcaatgacatggccactaacccggggtactacagtgagctg
gtggatcagtctctggggaccagcaccctggccactgacgagatagagcgagacctgcac
cgctccctaccagagcaccctgccttccagagcgacacaggcatctctgccctgcgcaga
gtcctcaccgcatacgcctacaggaaccccaaaataggctattgccaggccatgaacatc
ctgacgtcagtccttttgctctatgcaaaagaggaggaggctttctggctgcttgtggcc
gtctgtgagaggatgctgcctgactactttaaccgcaggatcatcggtgcactggtggac
caggcggtgtttgaggaactgatccgaatgcacctcacccagctgacggagcacatgaca
gacctgaccttcttctcctccgtgtccctgtcctggttcctgaccctgtttatcagtgtc
ctgccaatagagagcgcggtcaacgtggtcgactgcttcttctacgacggcatcaaagcc
atcctgcagctgggcctggctgtgctcgactataacatggagggcctgatcagctcccat
gacgacgctgaggcggtcaccatcctcaacaagttttttgataatgtgaccaataaggac
agtcctcttccacaaacagtgcagcaaaactctgtagggaacaatgacaaagcatcatcc
atctccaaggtggatgtcagtgatctcatcaaagaagcctatgagaaatatggagacatg
aaatcagaggaagtagagagcatgcggaaaagaaacaaactatatgttatccaaacgtta
gaggatacaaccaagcaaaatgtgctgcgggtagtgtcacaagaagtaaagttcagtgct
tcccagcttgatgaactttatgtattgttcaagaggcaacatttcctcagctgctactgg
acaatgaacagcccagtgctgctgcaccacgaccccagcctggcctatctggagcaatac
cagctgggcttccatcagttcagcctgctcttctccctcctggagccctggtccctctgc
agcggcaaggacaccctcttcctctgggccttccgcctgctggatgagaaccaggatggc
ctcgtcaacttcaaagagttctgctgtgccttggatattttgtacagcggcactttcacc
aacaaactgacattcctgttcaagcttcatcagccaccagctttcacagggagtcctttc
caatcaaaggcccaaagactgcctcactttattccaatgactgacgacatatcccacttg
agtcgattgactgtgtctgaccttccagaagatggcgtgatcagaaaaagccctgaaaga
ggcagagggaaagttgatctgcaggcctacctgaaacaatggcaagatgagatactaaag
aaagaggagagcattaaggatttacccagaataaaccaggctcagtttatccagttttcc
aaaacactctacaacctgttccatagtgacccagaggaagagtctctgtaccgtgctgtg
gctcgggtcaccagtcttctgctgagaatggaagaagtagggcgcaggctccaggagccc
accagtccccagaagtccagcactagccccatccaggctgccctagagggggctctacct
gacggggaggcttccagcacccctgagagcagctctgacacccctagcactcccatcact
caggaggcaggctccatcccacaggaggtcgagtggtcattcgcttttgagcagatcctg
gcatccctgctcaacgagcctgtccttgtgcgcttctttgagaggcctgtagacattcaa
gcccggctggaccatgccaagtgtgctcagttgaaagccaagacaaacaagtga
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